Task 91200

Name boinc2docker_14794_1553832660.655570_2
Workunit 41371
Created 29 Mar 2019, 13:13:26 UTC
Sent 29 Mar 2019, 13:13:46 UTC
Report deadline 5 Apr 2019, 13:13:46 UTC
Received 30 Mar 2019, 2:33:18 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 118
Run time 1 min 51 sec
CPU time 50 sec
Validate state Valid
Credit 2.96
Device peak FLOPS 17.95 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 103.00 MB
Peak swap size 118.52 MB
Peak disk usage 677.06 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-03-30 02:31:19 (22984): vboxwrapper (7.9.26200): starting
2019-03-30 02:31:19 (22984): Feature: Checkpoint interval offset (175 seconds)
2019-03-30 02:31:19 (22984): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-03-30 02:31:19 (22984): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-03-30 02:31:19 (22984): Create VM. (boinc_f9f33478fa844a91, slot#2)
2019-03-30 02:31:19 (22984): Updating drive controller type and model for desired configuration.
2019-03-30 02:31:19 (22984): Setting Memory Size for VM. (6392MB)
2019-03-30 02:31:19 (22984): Setting CPU Count for VM. (1)
2019-03-30 02:31:19 (22984): Setting Chipset Options for VM.
2019-03-30 02:31:19 (22984): Setting Boot Options for VM.
2019-03-30 02:31:19 (22984): Enabling VM Network Access.
2019-03-30 02:31:19 (22984): Setting Network Configuration for NAT.
2019-03-30 02:31:19 (22984): Disabling USB Support for VM.
2019-03-30 02:31:19 (22984): Disabling COM Port Support for VM.
2019-03-30 02:31:19 (22984): Disabling LPT Port Support for VM.
2019-03-30 02:31:19 (22984): Disabling Audio Support for VM.
2019-03-30 02:31:19 (22984): Disabling Clipboard Support for VM.
2019-03-30 02:31:19 (22984): Disabling Drag and Drop Support for VM.
2019-03-30 02:31:19 (22984): Adding storage controller(s) to VM.
2019-03-30 02:31:19 (22984): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-03-30 02:31:19 (22984): Adding VirtualBox Guest Additions to VM.
2019-03-30 02:31:19 (22984): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-03-30 02:31:19 (22984): Enabling shared directory for VM.
2019-03-30 02:31:19 (22984): Starting VM. (boinc_f9f33478fa844a91, slot#2)
2019-03-30 02:31:27 (22984): Guest Log: BIOS: VirtualBox 5.2.8

2019-03-30 02:31:27 (22984): Guest Log: CPUID EDX: 0x078bfbfd

2019-03-30 02:31:27 (22984): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-03-30 02:31:27 (22984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-03-30 02:31:27 (22984): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-03-30 02:31:27 (22984): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-03-30 02:31:27 (22984): Guest Log: BIOS: Booting from CD-ROM...

2019-03-30 02:31:27 (22984): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-03-30 02:31:27 (22984): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-03-30 02:31:27 (22984): Successfully started VM. (PID = '19100')
2019-03-30 02:31:27 (22984): Reporting VM Process ID to BOINC.
2019-03-30 02:31:32 (22984): VM state change detected. (old = 'poweroff', new = 'running')
2019-03-30 02:31:37 (22984): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-03-30 02:31:37 (22984): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-03-30 02:31:37 (22984): Guest Log: net.ipv4.ip_forward = 1

2019-03-30 02:31:37 (22984): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-03-30 02:31:37 (22984): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-03-30 02:31:37 (22984): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-03-30 02:31:37 (22984): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-03-30 02:31:37 (22984): Guest Log: Segmentation fault

2019-03-30 02:31:37 (22984): Guest Log: automount ...

2019-03-30 02:31:37 (22984): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-03-30 02:31:37 (22984): Guest Log: automount over.

2019-03-30 02:31:37 (22984): Guest Log: Setting hostname to boot2docker Done.

2019-03-30 02:31:37 (22984): Guest Log: Sat Mar 30 02:31:32 UTC 2019 dhcp -------------------------------

2019-03-30 02:31:42 (22984): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1079)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00 (1304)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1305)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1306)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1307)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1308)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1309)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1310)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1311)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1312)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1313)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1314)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1315)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1316)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1317)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1318)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event5 (1319)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1320)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1321)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1322)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1323)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1324)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1325)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1326)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1327)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1328)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1329)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1330)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1331)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1332)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1333)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1334)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1335)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1336)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1337)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1338)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1339)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1340)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1341)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1342)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1343)

2019-03-30 02:31:42 (22984): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1344)

2019-03-30 02:31:42 (22984): Guest Log: Sat Mar 30 02:31:38 UTC 2019 dhcp -------------------------------

2019-03-30 02:31:42 (22984): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.000050 main     Log opened 2019-03-30T02:31:38.441424000Z

2019-03-30 02:31:42 (22984): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.000050 main     Log opened 2019-03-30T02:31:38.441424000Z

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002069 main     OS Product: Linux

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002104 main     OS Release: 4.1.19-boot2docker

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002135 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002165 main     Executable: /sbin/VBoxService

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002166 main     Process ID: 870

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002166 main     Package type: LINUX_64BITS_GENERIC

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002069 main     OS Product: Linux

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002104 main     OS Release: 4.1.19-boot2docker

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002135 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002165 main     Executable: /sbin/VBoxService

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002166 main     Process ID: 870

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.002166 main     Package type: LINUX_64BITS_GENERIC

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.007513 main     5.0.16 r105871 started. Verbose level = 0

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.007513 main     5.0.16 r105871 started. Verbose level = 0

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.009946 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-03-30 02:31:42 (22984): Guest Log: 00:00:00.009985 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-03-30 02:31:42 (22984): Guest Log: Mounting BOINC shared/...

2019-03-30 02:31:42 (22984): Guest Log: -------------------

2019-03-30 02:31:42 (22984): Guest Log: Sat Mar 30 02:31:38 UTC 2019

2019-03-30 02:31:42 (22984): Preference change detected
2019-03-30 02:31:42 (22984): Setting CPU throttle for VM. (100%)
2019-03-30 02:31:42 (22984): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 600 seconds))
2019-03-30 02:31:47 (22984): Guest Log: 00:00:05.010937 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-03-30 02:31:47 (22984): Guest Log: Sat Mar 30 02:31:43 UTC 2019

2019-03-30 02:31:47 (22984): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-03-30 02:31:47 (22984): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-03-30 02:31:47 (22984): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-03-30 02:31:47 (22984): Guest Log:        valid_lft forever preferred_lft forever

2019-03-30 02:31:47 (22984): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-03-30 02:31:47 (22984): Guest Log:     link/ether 0a:39:2c:b2:f8:8a brd ff:ff:ff:ff:ff:ff

2019-03-30 02:31:47 (22984): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-03-30 02:31:47 (22984): Guest Log:     link/ether 08:00:27:f2:25:59 brd ff:ff:ff:ff:ff:ff

2019-03-30 02:31:47 (22984): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-03-30 02:31:47 (22984): Guest Log:        valid_lft forever preferred_lft forever

2019-03-30 02:31:47 (22984): Guest Log: -------------------

2019-03-30 02:31:47 (22984): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-03-30 02:31:47 (22984): Guest Log: Waiting for Docker daemon to start...

2019-03-30 02:31:47 (22984): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-03-30 02:31:47 (22984): Guest Log: Running boinc_app...

2019-03-30 02:31:47 (22984): Guest Log: Importing Docker image from BOINC...

2019-03-30 02:31:52 (22984): Guest Log: 00:00:10.011784 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-03-30 02:32:27 (22984): Guest Log: Prerun diagnostics...

2019-03-30 02:32:27 (22984): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE

2019-03-30 02:32:27 (22984): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        8 months ago        1.473 GB

2019-03-30 02:32:27 (22984): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-03-30 02:32:27 (22984): Guest Log: 1.4G	/var/lib/docker

2019-03-30 02:32:27 (22984): Guest Log:               total        used        free      shared  buff/cache   available

2019-03-30 02:32:27 (22984): Guest Log: Mem:           6204          54        4460        1634        1690        4462

2019-03-30 02:32:27 (22984): Guest Log: Swap:          1499           0        1499

2019-03-30 02:32:27 (22984): Guest Log: Prerun commands...

2019-03-30 02:32:27 (22984): Guest Log: Running... 

2019-03-30 02:32:27 (22984): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-03-30 02:32:27 (22984): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:04 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:05 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:06 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:07 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:08 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:09 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:10 --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log:   1  762k    1 14434    0     0   1315      0  0:09:53  0:00:10  0:09:43  3253

2019-03-30 02:32:42 (22984): Guest Log:  18  762k   18  138k    0     0  11517      0  0:01:07  0:00:12  0:00:55 29755

2019-03-30 02:32:42 (22984): Guest Log:  18  762k   18  138k    0     0  10647      0  0:01:13  0:00:13  0:01:00 29748

2019-03-30 02:32:42 (22984): Guest Log:  49  762k   49  373k    0     0  27548      0  0:00:28  0:00:13  0:00:15 87955

2019-03-30 02:32:42 (22984): Guest Log: 100  762k  100  762k    0     0  53338      0  0:00:14  0:00:14 --:--:--  186k

2019-03-30 02:32:42 (22984): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-03-30 02:32:42 (22984): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-03-30 02:32:42 (22984): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-03-30 02:32:42 (22984): Guest Log: 100  1272  100  1272    0     0   4064      0 --:--:-- --:--:-- --:--:--  4063

2019-03-30 02:32:42 (22984): Guest Log: 100  1272  100  1272    0     0   4064      0 --:--:-- --:--:-- --:--:--  4063

2019-03-30 02:32:57 (22984): Guest Log: Postrun commands...

2019-03-30 02:32:57 (22984): Guest Log: boinc_app exited (0)

2019-03-30 02:32:57 (22984): Guest Log: Saving results...

2019-03-30 02:32:57 (22984): Guest Log: lammps_test.txt

2019-03-30 02:32:57 (22984): VM Completion File Detected.
2019-03-30 02:32:57 (22984): Powering off VM.
2019-03-30 02:32:58 (22984): Successfully stopped VM.
2019-03-30 02:33:03 (22984): Deregistering VM. (boinc_f9f33478fa844a91, slot#2)
2019-03-30 02:33:03 (22984): Removing virtual disk drive(s) from VM.
2019-03-30 02:33:03 (22984): Removing network bandwidth throttle group from VM.
2019-03-30 02:33:03 (22984): Removing storage controller(s) from VM.
2019-03-30 02:33:03 (22984): Removing VM from VirtualBox.
02:33:08 (22984): called boinc_finish(0)

</stderr_txt>
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