Task 89370

Name boinc2docker_27410_1553832356.695246_0
Workunit 41087
Created 29 Mar 2019, 4:05:59 UTC
Sent 29 Mar 2019, 4:47:26 UTC
Report deadline 5 Apr 2019, 4:47:26 UTC
Received 29 Mar 2019, 7:10:00 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 631
Run time 1 min 20 sec
CPU time 54 sec
Validate state Valid
Credit 5.40
Device peak FLOPS 17.20 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 121.90 MB
Peak swap size 6,241.93 MB
Peak disk usage 677.08 MB

Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
2019-03-29 07:17:26 (25813): vboxwrapper (7.7.26197): starting
2019-03-29 07:17:28 (25813): Feature: Checkpoint interval offset (502 seconds)
2019-03-29 07:17:28 (25813): Detected: VirtualBox VboxManage Interface (Version: 5.2.18)
2019-03-29 07:17:28 (25813): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-03-29 07:17:28 (25813): Create VM. (boinc_7a23dfd2810f8cab, slot#5)
2019-03-29 07:17:28 (25813): Updating drive controller type and model for desired configuration.
2019-03-29 07:17:28 (25813): Setting Memory Size for VM. (6392MB)
2019-03-29 07:17:28 (25813): Setting CPU Count for VM. (4)
2019-03-29 07:17:28 (25813): Setting Chipset Options for VM.
2019-03-29 07:17:28 (25813): Setting Boot Options for VM.
2019-03-29 07:17:28 (25813): Setting Network Configuration for NAT.
2019-03-29 07:17:29 (25813): Enabling VM Network Access.
2019-03-29 07:17:29 (25813): Disabling USB Support for VM.
2019-03-29 07:17:29 (25813): Disabling COM Port Support for VM.
2019-03-29 07:17:29 (25813): Disabling LPT Port Support for VM.
2019-03-29 07:17:29 (25813): Disabling Audio Support for VM.
2019-03-29 07:17:29 (25813): Disabling Clipboard Support for VM.
2019-03-29 07:17:29 (25813): Disabling Drag and Drop Support for VM.
2019-03-29 07:17:29 (25813): Adding storage controller(s) to VM.
2019-03-29 07:17:29 (25813): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-03-29 07:17:29 (25813): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-03-29 07:17:29 (25813): Enabling shared directory for VM.
2019-03-29 07:17:30 (25813): Starting VM. (boinc_7a23dfd2810f8cab, slot#5)
2019-03-29 07:17:31 (25813): Successfully started VM. (PID = '26132')
2019-03-29 07:17:31 (25813): Reporting VM Process ID to BOINC.
2019-03-29 07:17:31 (25813): Guest Log: BIOS: VirtualBox 5.2.18
2019-03-29 07:17:31 (25813): Guest Log: CPUID EDX: 0x178bfbff
2019-03-29 07:17:31 (25813): VM state change detected. (old = 'poweroff', new = 'running')
2019-03-29 07:17:31 (25813): Preference change detected
2019-03-29 07:17:31 (25813): Setting CPU throttle for VM. (100%)
2019-03-29 07:17:31 (25813): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 600 seconds))
2019-03-29 07:17:33 (25813): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-03-29 07:17:33 (25813): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-03-29 07:17:33 (25813): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-03-29 07:17:33 (25813): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-03-29 07:17:33 (25813): Guest Log: BIOS: Booting from CD-ROM...
2019-03-29 07:17:38 (25813): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-03-29 07:17:38 (25813): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-03-29 07:17:45 (25813): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-03-29 07:17:45 (25813): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-03-29 07:17:45 (25813): Guest Log: net.ipv4.ip_forward = 1
2019-03-29 07:17:45 (25813): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-03-29 07:17:45 (25813): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-03-29 07:17:45 (25813): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-03-29 07:17:45 (25813): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-03-29 07:17:45 (25813): Guest Log: Segmentation fault
2019-03-29 07:17:45 (25813): Guest Log: automount ...
2019-03-29 07:17:45 (25813): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-03-29 07:17:45 (25813): Guest Log: automount over.
2019-03-29 07:17:45 (25813): Guest Log: Setting hostname to boot2docker Done.
2019-03-29 07:17:45 (25813): Guest Log: Fri Mar 29 07:17:43 UTC 2019 dhcp -------------------------------
2019-03-29 07:17:50 (25813): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1099)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00 (1333)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1334)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1335)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1336)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1337)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1338)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1339)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1340)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1341)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1342)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1343)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1344)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1345)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1346)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1347)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1348)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1349)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1350)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event5 (1351)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1352)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1353)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1354)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1355)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1356)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1357)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1358)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1359)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1360)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1361)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1362)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1363)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1364)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1365)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1366)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1367)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1368)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1369)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1370)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1371)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1372)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1373)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1374)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1375)
2019-03-29 07:17:50 (25813): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1376)
2019-03-29 07:17:51 (25813): Guest Log: Fri Mar 29 07:17:49 UTC 2019 dhcp -------------------------------
2019-03-29 07:17:51 (25813): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.000074 main     Log opened 2019-03-29T07:17:49.445409000Z
2019-03-29 07:17:51 (25813): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.000074 main     Log opened 2019-03-29T07:17:49.445409000Z
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.002608 main     OS Product: Linux
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.002608 main     OS Product: Linux
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.003609 main     OS Release: 4.1.19-boot2docker
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.007419 main     Executable: /sbin/VBoxService
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.007420 main     Process ID: 829
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.007421 main     Package type: LINUX_64BITS_GENERIC
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.007419 main     Executable: /sbin/VBoxService
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.007420 main     Process ID: 829
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.009409 main     5.0.16 r105871 started. Verbose level = 0
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.007421 main     Package type: LINUX_64BITS_GENERIC
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.009409 main     5.0.16 r105871 started. Verbose level = 0
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.012952 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-03-29 07:17:51 (25813): Guest Log: 00:00:00.013015 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-03-29 07:17:52 (25813): Guest Log: Mounting BOINC shared/...
2019-03-29 07:17:52 (25813): Guest Log: -------------------
2019-03-29 07:17:52 (25813): Guest Log: Fri Mar 29 06:17:51 UTC 2019
2019-03-29 07:17:57 (25813): Guest Log: 00:00:05.014772 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-03-29 07:17:57 (25813): Guest Log: Fri Mar 29 06:17:56 UTC 2019
2019-03-29 07:17:57 (25813): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-03-29 07:17:57 (25813): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-03-29 07:17:57 (25813): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-03-29 07:17:57 (25813): Guest Log:        valid_lft forever preferred_lft forever
2019-03-29 07:17:57 (25813): Guest Log:     inet6 ::1/128 scope host 
2019-03-29 07:17:57 (25813): Guest Log:        valid_lft forever preferred_lft forever
2019-03-29 07:17:57 (25813): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-03-29 07:17:57 (25813): Guest Log:     link/ether 0e:64:81:f1:6a:42 brd ff:ff:ff:ff:ff:ff
2019-03-29 07:17:57 (25813): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-03-29 07:17:57 (25813): Guest Log:     link/ether 08:00:27:18:7e:ee brd ff:ff:ff:ff:ff:ff
2019-03-29 07:17:57 (25813): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-03-29 07:17:57 (25813): Guest Log:        valid_lft forever preferred_lft forever
2019-03-29 07:17:57 (25813): Guest Log:     inet6 fe80::a00:27ff:fe18:7eee/64 scope link 
2019-03-29 07:17:57 (25813): Guest Log:        valid_lft forever preferred_lft forever
2019-03-29 07:17:57 (25813): Guest Log: -------------------
2019-03-29 07:17:57 (25813): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-03-29 07:17:57 (25813): Guest Log: Waiting for Docker daemon to start...
2019-03-29 07:17:58 (25813): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-03-29 07:17:58 (25813): Guest Log: Running boinc_app...
2019-03-29 07:17:58 (25813): Guest Log: Importing Docker image from BOINC...
2019-03-29 07:18:02 (25813): Guest Log: 00:00:10.015785 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-03-29 07:18:35 (25813): Guest Log: Prerun diagnostics...
2019-03-29 07:18:35 (25813): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-03-29 07:18:35 (25813): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        8 months ago        1.473 GB
2019-03-29 07:18:35 (25813): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-03-29 07:18:35 (25813): Guest Log: 1.4G	/var/lib/docker
2019-03-29 07:18:35 (25813): Guest Log:               total        used        free      shared  buff/cache   available
2019-03-29 07:18:35 (25813): Guest Log: Mem:           6204          59        4451        1634        1693        4454
2019-03-29 07:18:35 (25813): Guest Log: Swap:          1499           0        1499
2019-03-29 07:18:35 (25813): Guest Log: Prerun commands...
2019-03-29 07:18:35 (25813): Guest Log: Running... 
2019-03-29 07:18:35 (25813): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-03-29 07:18:35 (25813): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-03-29 07:18:37 (25813): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-29 07:18:37 (25813): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-29 07:18:37 (25813): Guest Log: 100  762k  100  762k    0     0   611k      0  0:00:01  0:00:01 --:--:--  611k
2019-03-29 07:18:37 (25813): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-03-29 07:18:37 (25813): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-03-29 07:18:37 (25813): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-29 07:18:37 (25813): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-29 07:18:37 (25813): Guest Log: 100  1272  100  1272    0     0   3393      0 --:--:-- --:--:-- --:--:--  3392
2019-03-29 07:18:38 (25813): Guest Log: Postrun commands...
2019-03-29 07:18:38 (25813): Guest Log: boinc_app exited (0)
2019-03-29 07:18:38 (25813): Guest Log: Saving results...
2019-03-29 07:18:38 (25813): Guest Log: lammps_test.txt
2019-03-29 07:18:38 (25813): VM Completion File Detected.
2019-03-29 07:18:38 (25813): Powering off VM.
2019-03-29 07:18:39 (25813): Successfully stopped VM.
2019-03-29 07:18:39 (25813): Deregistering VM. (boinc_7a23dfd2810f8cab, slot#5)
2019-03-29 07:18:39 (25813): Removing network bandwidth throttle group from VM.
2019-03-29 07:18:39 (25813): Removing storage controller(s) from VM.
2019-03-29 07:18:39 (25813): Removing VM from VirtualBox.
2019-03-29 07:18:39 (25813): Removing virtual ISO 9660 disk from VirtualBox.
07:18:44 (25813): called boinc_finish(0)

</stderr_txt>
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