Task 58576

Name boinc2docker_10372_1551556246.283438_0
Workunit 28371
Created 2 Mar 2019, 19:50:51 UTC
Sent 2 Mar 2019, 21:11:05 UTC
Report deadline 9 Mar 2019, 21:11:05 UTC
Received 3 Mar 2019, 3:42:00 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 67
Run time 1 min 40 sec
CPU time 1 min 43 sec
Validate state Valid
Credit 27.70
Device peak FLOPS 25.78 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 489.28 MB
Peak swap size 7,095.16 MB
Peak disk usage 676.99 MB

Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
2019-03-03 04:28:09 (23668): vboxwrapper (7.7.26197): starting
2019-03-03 04:28:09 (23668): Feature: Checkpoint interval offset (367 seconds)
2019-03-03 04:28:09 (23668): Detected: VirtualBox VboxManage Interface (Version: 5.2.18)
2019-03-03 04:28:09 (23668): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-03-03 04:28:09 (23668): Create VM. (boinc_8b0950cf015f9430, slot#1)
2019-03-03 04:28:09 (23668): Updating drive controller type and model for desired configuration.
2019-03-03 04:28:10 (23668): Setting Memory Size for VM. (6392MB)
2019-03-03 04:28:10 (23668): Setting CPU Count for VM. (8)
2019-03-03 04:28:10 (23668): Setting Chipset Options for VM.
2019-03-03 04:28:10 (23668): Setting Boot Options for VM.
2019-03-03 04:28:10 (23668): Setting Network Configuration for NAT.
2019-03-03 04:28:10 (23668): Enabling VM Network Access.
2019-03-03 04:28:11 (23668): Disabling USB Support for VM.
2019-03-03 04:28:11 (23668): Disabling COM Port Support for VM.
2019-03-03 04:28:11 (23668): Disabling LPT Port Support for VM.
2019-03-03 04:28:11 (23668): Disabling Audio Support for VM.
2019-03-03 04:28:11 (23668): Disabling Clipboard Support for VM.
2019-03-03 04:28:11 (23668): Disabling Drag and Drop Support for VM.
2019-03-03 04:28:11 (23668): Adding storage controller(s) to VM.
2019-03-03 04:28:11 (23668): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-03-03 04:28:12 (23668): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-03-03 04:28:12 (23668): Enabling shared directory for VM.
2019-03-03 04:28:12 (23668): Starting VM. (boinc_8b0950cf015f9430, slot#1)
2019-03-03 04:28:14 (23668): Successfully started VM. (PID = '23987')
2019-03-03 04:28:14 (23668): Reporting VM Process ID to BOINC.
2019-03-03 04:28:14 (23668): Guest Log: BIOS: VirtualBox 5.2.18
2019-03-03 04:28:14 (23668): Guest Log: CPUID EDX: 0x178bfbff
2019-03-03 04:28:14 (23668): VM state change detected. (old = 'poweroff', new = 'running')
2019-03-03 04:28:14 (23668): Preference change detected
2019-03-03 04:28:14 (23668): Setting CPU throttle for VM. (100%)
2019-03-03 04:28:18 (23668): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-03-03 04:28:18 (23668): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-03-03 04:28:18 (23668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-03-03 04:28:18 (23668): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-03-03 04:28:18 (23668): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-03-03 04:28:18 (23668): Guest Log: BIOS: Booting from CD-ROM...
2019-03-03 04:28:19 (23668): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-03-03 04:28:19 (23668): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-03-03 04:28:28 (23668): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-03-03 04:28:28 (23668): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-03-03 04:28:28 (23668): Guest Log: net.ipv4.ip_forward = 1
2019-03-03 04:28:28 (23668): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-03-03 04:28:28 (23668): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-03-03 04:28:28 (23668): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-03-03 04:28:28 (23668): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-03-03 04:28:28 (23668): Guest Log: Segmentation fault
2019-03-03 04:28:28 (23668): Guest Log: automount ...
2019-03-03 04:28:28 (23668): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-03-03 04:28:28 (23668): Guest Log: automount over.
2019-03-03 04:28:28 (23668): Guest Log: Setting hostname to boot2docker Done.
2019-03-03 04:28:28 (23668): Guest Log: Sun Mar  3 04:28:26 UTC 2019 dhcp -------------------------------
2019-03-03 04:28:33 (23668): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1137)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00 (1385)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1386)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1387)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1388)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1389)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:04 (1390)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:05 (1391)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:06 (1392)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:07 (1393)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1394)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1395)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1396)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1397)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1398)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1399)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1400)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1401)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1402)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1403)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1404)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1405)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input8 (1406)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input8/event6 (1407)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1408)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1409)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1410)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1411)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1412)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1413)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1414)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1415)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1416)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1417)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1418)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1419)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1420)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1421)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1422)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1423)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1424)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1425)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1426)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1427)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1428)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1429)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1430)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1431)
2019-03-03 04:28:33 (23668): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1432)
2019-03-03 04:28:34 (23668): Guest Log: Sun Mar  3 04:28:32 UTC 2019 dhcp -------------------------------
2019-03-03 04:28:34 (23668): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000106 main     Log opened 2019-03-03T04:28:32.440944000Z
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000246 main     OS Product: Linux
2019-03-03 04:28:34 (23668): Guest Log: V00:00:00.000351 main     OS Release: 4.1.19-boot2dockerB
2019-03-03 04:28:34 (23668): Guest Log: oxS00:00:00.000419 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-03-03 04:28:34 (23668): Guest Log: rvi00:00:00.000481 main     Executable: /sbin/VBoxServicec
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000485 main     Process ID: 901
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000486 main     Package type: LINUX_64BITS_GENERIC
2019-03-03 04:28:34 (23668): Guest Log:  5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.002105 main     5.0.16 r105871 started. Verbose level = 0
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000106 main     Log opened 2019-03-03T04:28:32.440944000Z
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.005802 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-03-03 04:28:34 (23668): Guest Log: 0000:00:00.005873 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed:
2019-03-03 04:28:34 (23668): Guest Log: 0:00.000246 main     OS Product: Linux
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000351 main     OS Release: 4.1.19-boot2docker
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000419 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000481 main     Executable: /sbin/VBoxService
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000485 main     Process ID: 901
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.000486 main     Package type: LINUX_64BITS_GENERIC
2019-03-03 04:28:34 (23668): Guest Log: 00:00:00.002105 main     5.0.16 r105871 started. Verbose level = 0
2019-03-03 04:28:34 (23668): Guest Log: Mounting BOINC shared/...
2019-03-03 04:28:34 (23668): Guest Log: -------------------
2019-03-03 04:28:34 (23668): Guest Log: Sun Mar  3 03:28:34 UTC 2019
2019-03-03 04:28:39 (23668): Guest Log: 00:00:05.010173 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-03-03 04:28:40 (23668): Guest Log: Sun Mar  3 03:28:39 UTC 2019
2019-03-03 04:28:40 (23668): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-03-03 04:28:40 (23668): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-03-03 04:28:40 (23668): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-03-03 04:28:40 (23668): Guest Log:        valid_lft forever preferred_lft forever
2019-03-03 04:28:40 (23668): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-03-03 04:28:40 (23668): Guest Log:     link/ether 62:62:80:ee:6a:6e brd ff:ff:ff:ff:ff:ff
2019-03-03 04:28:40 (23668): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-03-03 04:28:40 (23668): Guest Log:     link/ether 08:00:27:8d:51:70 brd ff:ff:ff:ff:ff:ff
2019-03-03 04:28:40 (23668): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-03-03 04:28:40 (23668): Guest Log:        valid_lft forever preferred_lft forever
2019-03-03 04:28:40 (23668): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-03-03 04:28:40 (23668): Guest Log: Waiting for Docker daemon to start...
2019-03-03 04:28:41 (23668): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-03-03 04:28:41 (23668): Guest Log: Running boinc_app...
2019-03-03 04:28:41 (23668): Guest Log: Importing Docker image from BOINC...
2019-03-03 04:28:44 (23668): Guest Log: 00:00:10.011188 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-03-03 04:29:36 (23668): Guest Log: Prerun diagnostics...
2019-03-03 04:29:36 (23668): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-03-03 04:29:36 (23668): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        8 months ago        1.473 GB
2019-03-03 04:29:36 (23668): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-03-03 04:29:37 (23668): Guest Log: 1.4G	/var/lib/docker
2019-03-03 04:29:37 (23668): Guest Log:               total        used        free      shared  buff/cache   available
2019-03-03 04:29:37 (23668): Guest Log: Mem:           6204          72        4437        1633        1693        4440
2019-03-03 04:29:37 (23668): Guest Log: Swap:          1498           0        1498
2019-03-03 04:29:37 (23668): Guest Log: Prerun commands...
2019-03-03 04:29:37 (23668): Guest Log: Running... 
2019-03-03 04:29:37 (23668): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-03-03 04:29:37 (23668): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-03-03 04:29:39 (23668): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-03 04:29:39 (23668): Guest Log:   5  762k    5 43059    0     0  49384      0  0:00:15 --:--:--  0:00:15 49379
2019-03-03 04:29:39 (23668): Guest Log:  81  762k   81  621k    0     0   342k      0  0:00:02  0:00:01  0:00:01  342k
2019-03-03 04:29:39 (23668): Guest Log: 100  762k  100  762k    0     0   379k      0  0:00:02  0:00:02 --:--:--  379k
2019-03-03 04:29:39 (23668): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-03-03 04:29:39 (23668): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-03-03 04:29:39 (23668): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-03 04:29:39 (23668): Guest Log: 100  1272  100  1272    0     0   4011      0 --:--:-- --:--:-- --:--:--  4025
2019-03-03 04:29:40 (23668): Guest Log: Postrun commands...
2019-03-03 04:29:40 (23668): Guest Log: boinc_app exited (0)
2019-03-03 04:29:40 (23668): Guest Log: Saving results...
2019-03-03 04:29:40 (23668): Guest Log: lammps_test.txt
2019-03-03 04:29:40 (23668): VM Completion File Detected.
2019-03-03 04:29:40 (23668): Powering off VM.
2019-03-03 04:29:41 (23668): Successfully stopped VM.
2019-03-03 04:29:41 (23668): Deregistering VM. (boinc_8b0950cf015f9430, slot#1)
2019-03-03 04:29:41 (23668): Removing network bandwidth throttle group from VM.
2019-03-03 04:29:41 (23668): Removing storage controller(s) from VM.
2019-03-03 04:29:41 (23668): Removing VM from VirtualBox.
2019-03-03 04:29:42 (23668): Removing virtual ISO 9660 disk from VirtualBox.
04:29:47 (23668): called boinc_finish(0)

</stderr_txt>
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