Task 53531

Name boinc2docker_4897_1551554949.600941_0
Workunit 25849
Created 2 Mar 2019, 19:29:10 UTC
Sent 2 Mar 2019, 20:31:45 UTC
Report deadline 9 Mar 2019, 20:31:45 UTC
Received 3 Mar 2019, 2:01:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 45
Run time 1 min 15 sec
CPU time 53 sec
Validate state Valid
Credit 31.07
Device peak FLOPS 86.22 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 121.99 MB
Peak swap size 5,945.35 MB
Peak disk usage 677.08 MB

Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
2019-03-02 21:00:29 (18276): vboxwrapper (7.7.26197): starting
2019-03-02 21:00:29 (18276): Feature: Checkpoint interval offset (433 seconds)
2019-03-02 21:00:29 (18276): Detected: VirtualBox VboxManage Interface (Version: 5.2.10)
2019-03-02 21:00:29 (18276): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-03-02 21:00:29 (18276): Create VM. (boinc_e88408703bf91bd6, slot#5)
2019-03-02 21:00:29 (18276): Updating drive controller type and model for desired configuration.
2019-03-02 21:00:29 (18276): Setting Memory Size for VM. (6392MB)
2019-03-02 21:00:29 (18276): Setting CPU Count for VM. (2)
2019-03-02 21:00:30 (18276): Setting Chipset Options for VM.
2019-03-02 21:00:30 (18276): Setting Boot Options for VM.
2019-03-02 21:00:30 (18276): Setting Network Configuration for NAT.
2019-03-02 21:00:30 (18276): Enabling VM Network Access.
2019-03-02 21:00:30 (18276): Disabling USB Support for VM.
2019-03-02 21:00:30 (18276): Disabling COM Port Support for VM.
2019-03-02 21:00:30 (18276): Disabling LPT Port Support for VM.
2019-03-02 21:00:30 (18276): Disabling Audio Support for VM.
2019-03-02 21:00:30 (18276): Disabling Clipboard Support for VM.
2019-03-02 21:00:30 (18276): Disabling Drag and Drop Support for VM.
2019-03-02 21:00:30 (18276): Adding storage controller(s) to VM.
2019-03-02 21:00:30 (18276): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-03-02 21:00:30 (18276): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-03-02 21:00:31 (18276): Enabling shared directory for VM.
2019-03-02 21:00:31 (18276): Starting VM. (boinc_e88408703bf91bd6, slot#5)
2019-03-02 21:00:32 (18276): Successfully started VM. (PID = '18616')
2019-03-02 21:00:32 (18276): Reporting VM Process ID to BOINC.
2019-03-02 21:00:32 (18276): Guest Log: BIOS: VirtualBox 5.2.10
2019-03-02 21:00:32 (18276): Guest Log: CPUID EDX: 0x178bfbff
2019-03-02 21:00:32 (18276): VM state change detected. (old = 'poweroff', new = 'running')
2019-03-02 21:00:33 (18276): Preference change detected
2019-03-02 21:00:33 (18276): Setting CPU throttle for VM. (100%)
2019-03-02 21:00:33 (18276): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-03-02 21:00:35 (18276): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-03-02 21:00:35 (18276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-03-02 21:00:35 (18276): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-03-02 21:00:35 (18276): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-03-02 21:00:35 (18276): Guest Log: BIOS: Booting from CD-ROM...
2019-03-02 21:00:35 (18276): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-03-02 21:00:35 (18276): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-03-02 21:00:43 (18276): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-03-02 21:00:43 (18276): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-03-02 21:00:43 (18276): Guest Log: net.ipv4.ip_forward = 1
2019-03-02 21:00:43 (18276): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-03-02 21:00:43 (18276): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-03-02 21:00:43 (18276): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-03-02 21:00:43 (18276): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-03-02 21:00:43 (18276): Guest Log: Segmentation fault
2019-03-02 21:00:43 (18276): Guest Log: automount ...
2019-03-02 21:00:43 (18276): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-03-02 21:00:43 (18276): Guest Log: automount over.
2019-03-02 21:00:43 (18276): Guest Log: Setting hostname to boot2docker Done.
2019-03-02 21:00:43 (18276): Guest Log: Sat Mar  2 21:00:41 UTC 2019 dhcp -------------------------------
2019-03-02 21:00:48 (18276): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1075)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00 (1297)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1298)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1299)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1300)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1301)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1302)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1303)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1304)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1305)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1306)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1307)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1308)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1309)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1310)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1311)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input8 (1312)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input8/event6 (1313)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1314)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1315)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1316)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1317)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1318)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1319)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1325)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1326)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1327)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1328)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1329)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1330)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1331)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1332)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1333)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1334)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1335)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1336)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1337)
2019-03-02 21:00:48 (18276): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1338)
2019-03-02 21:00:49 (18276): Guest Log: Sat Mar  2 21:00:47 UTC 2019 dhcp -------------------------------
2019-03-02 21:00:49 (18276): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000079 main     Log opened 2019-03-02T21:00:47.606676000Z
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000146 main     OS Product: Linux
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000164 main     OS Release: 4.1.19-boot2docker
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000178 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000194 main     Executable: /sbin/VBoxService
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000195 main     Process ID: 792
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000195 main     Package type: LINUX_64BITS_GENERIC
2019-03-02 21:00:49 (18276): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000079 main     Log opened 2019-03-02T21:00:47.606676000Z
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000146 main     OS Product: Linux
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000164 main     OS Release: 4.1.19-boot2docker
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000178 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000194 main     Executable: /sbin/VBoxService
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000195 main     Process ID: 792
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.000195 main     Package type: LINUX_64BITS_GENERIC
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.010708 main     5.0.16 r105871 started. Verbose level = 0
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.010708 main     5.0.16 r105871 started. Verbose level = 0
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.013197 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-03-02 21:00:49 (18276): Guest Log: 00:00:00.013237 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-03-02 21:00:49 (18276): Guest Log: Mounting BOINC shared/...
2019-03-02 21:00:50 (18276): Guest Log: -------------------
2019-03-02 21:00:50 (18276): Guest Log: Sun Mar  3 02:00:49 UTC 2019
2019-03-02 21:00:54 (18276): Guest Log: 00:00:05.017924 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-03-02 21:00:55 (18276): Guest Log: Sun Mar  3 02:00:54 UTC 2019
2019-03-02 21:00:55 (18276): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-03-02 21:00:55 (18276): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-03-02 21:00:55 (18276): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-03-02 21:00:55 (18276): Guest Log:        valid_lft forever preferred_lft forever
2019-03-02 21:00:55 (18276): Guest Log:     inet6 ::1/128 scope host 
2019-03-02 21:00:55 (18276): Guest Log:        valid_lft forever preferred_lft forever
2019-03-02 21:00:55 (18276): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-03-02 21:00:55 (18276): Guest Log:     link/ether 7a:49:65:b9:b8:15 brd ff:ff:ff:ff:ff:ff
2019-03-02 21:00:55 (18276): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-03-02 21:00:55 (18276): Guest Log:     link/ether 08:00:27:62:b7:f2 brd ff:ff:ff:ff:ff:ff
2019-03-02 21:00:55 (18276): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-03-02 21:00:55 (18276): Guest Log:        valid_lft forever preferred_lft forever
2019-03-02 21:00:55 (18276): Guest Log:     inet6 fe80::a00:27ff:fe62:b7f2/64 scope link 
2019-03-02 21:00:55 (18276): Guest Log:        valid_lft forever preferred_lft forever
2019-03-02 21:00:55 (18276): Guest Log: -------------------
2019-03-02 21:00:55 (18276): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-03-02 21:00:55 (18276): Guest Log: Waiting for Docker daemon to start...
2019-03-02 21:00:56 (18276): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-03-02 21:00:56 (18276): Guest Log: Running boinc_app...
2019-03-02 21:00:56 (18276): Guest Log: Importing Docker image from BOINC...
2019-03-02 21:00:59 (18276): Guest Log: 00:00:10.018377 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-03-02 21:01:35 (18276): Guest Log: Prerun diagnostics...
2019-03-02 21:01:35 (18276): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-03-02 21:01:35 (18276): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        8 months ago        1.473 GB
2019-03-02 21:01:35 (18276): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-03-02 21:01:35 (18276): Guest Log: 1.4G	/var/lib/docker
2019-03-02 21:01:35 (18276): Guest Log:               total        used        free      shared  buff/cache   available
2019-03-02 21:01:35 (18276): Guest Log: Mem:           6204          56        4456        1634        1691        4459
2019-03-02 21:01:35 (18276): Guest Log: Swap:          1501           0        1501
2019-03-02 21:01:35 (18276): Guest Log: Prerun commands...
2019-03-02 21:01:35 (18276): Guest Log: Running... 
2019-03-02 21:01:35 (18276): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-03-02 21:01:35 (18276): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-03-02 21:01:36 (18276): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-02 21:01:36 (18276): Guest Log:  49  762k   49  374k    0     0   780k      0 --:--:-- --:--:-- --:--:--  780k
2019-03-02 21:01:36 (18276): Guest Log: 100  762k  100  762k    0     0   805k      0 --:--:-- --:--:-- --:--:--  805k
2019-03-02 21:01:36 (18276): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-03-02 21:01:36 (18276): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-03-02 21:01:36 (18276): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-02 21:01:36 (18276): Guest Log: 100  1272  100  1272    0     0   9658      0 --:--:-- --:--:-- --:--:--  9709
2019-03-02 21:01:37 (18276): Guest Log: Postrun commands...
2019-03-02 21:01:37 (18276): Guest Log: boinc_app exited (0)
2019-03-02 21:01:37 (18276): Guest Log: Saving results...
2019-03-02 21:01:37 (18276): Guest Log: lammps_test.txt
2019-03-02 21:01:37 (18276): VM Completion File Detected.
2019-03-02 21:01:37 (18276): Powering off VM.
2019-03-02 21:01:37 (18276): Successfully stopped VM.
2019-03-02 21:01:37 (18276): Deregistering VM. (boinc_e88408703bf91bd6, slot#5)
2019-03-02 21:01:37 (18276): Removing network bandwidth throttle group from VM.
2019-03-02 21:01:37 (18276): Removing storage controller(s) from VM.
2019-03-02 21:01:38 (18276): Removing VM from VirtualBox.
2019-03-02 21:01:38 (18276): Removing virtual ISO 9660 disk from VirtualBox.
21:01:43 (18276): called boinc_finish(0)

</stderr_txt>
]]>