Task 53519

Name boinc2docker_4657_1551554946.687304_0
Workunit 25843
Created 2 Mar 2019, 19:29:10 UTC
Sent 2 Mar 2019, 20:31:45 UTC
Report deadline 9 Mar 2019, 20:31:45 UTC
Received 3 Mar 2019, 1:49:24 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 45
Run time 1 min 16 sec
CPU time 53 sec
Validate state Valid
Credit 32.11
Device peak FLOPS 86.22 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 3,738.07 MB
Peak swap size 5,778.86 MB
Peak disk usage 676.99 MB

Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
2019-03-02 20:48:02 (13540): vboxwrapper (7.7.26197): starting
2019-03-02 20:48:02 (13540): Feature: Checkpoint interval offset (264 seconds)
2019-03-02 20:48:02 (13540): Detected: VirtualBox VboxManage Interface (Version: 5.2.10)
2019-03-02 20:48:02 (13540): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-03-02 20:48:02 (13540): Create VM. (boinc_7c17b7292b5fbc1c, slot#3)
2019-03-02 20:48:02 (13540): Updating drive controller type and model for desired configuration.
2019-03-02 20:48:02 (13540): Setting Memory Size for VM. (6392MB)
2019-03-02 20:48:02 (13540): Setting CPU Count for VM. (2)
2019-03-02 20:48:02 (13540): Setting Chipset Options for VM.
2019-03-02 20:48:02 (13540): Setting Boot Options for VM.
2019-03-02 20:48:03 (13540): Setting Network Configuration for NAT.
2019-03-02 20:48:03 (13540): Enabling VM Network Access.
2019-03-02 20:48:03 (13540): Disabling USB Support for VM.
2019-03-02 20:48:03 (13540): Disabling COM Port Support for VM.
2019-03-02 20:48:03 (13540): Disabling LPT Port Support for VM.
2019-03-02 20:48:03 (13540): Disabling Audio Support for VM.
2019-03-02 20:48:03 (13540): Disabling Clipboard Support for VM.
2019-03-02 20:48:03 (13540): Disabling Drag and Drop Support for VM.
2019-03-02 20:48:03 (13540): Adding storage controller(s) to VM.
2019-03-02 20:48:03 (13540): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-03-02 20:48:03 (13540): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-03-02 20:48:03 (13540): Enabling shared directory for VM.
2019-03-02 20:48:03 (13540): Starting VM. (boinc_7c17b7292b5fbc1c, slot#3)
2019-03-02 20:48:05 (13540): Successfully started VM. (PID = '13880')
2019-03-02 20:48:05 (13540): Reporting VM Process ID to BOINC.
2019-03-02 20:48:05 (13540): Guest Log: BIOS: VirtualBox 5.2.10
2019-03-02 20:48:05 (13540): Guest Log: CPUID EDX: 0x178bfbff
2019-03-02 20:48:05 (13540): VM state change detected. (old = 'poweroff', new = 'running')
2019-03-02 20:48:05 (13540): Preference change detected
2019-03-02 20:48:05 (13540): Setting CPU throttle for VM. (100%)
2019-03-02 20:48:05 (13540): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-03-02 20:48:07 (13540): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-03-02 20:48:07 (13540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-03-02 20:48:07 (13540): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-03-02 20:48:07 (13540): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-03-02 20:48:07 (13540): Guest Log: BIOS: Booting from CD-ROM...
2019-03-02 20:48:07 (13540): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-03-02 20:48:07 (13540): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-03-02 20:48:15 (13540): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-03-02 20:48:15 (13540): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-03-02 20:48:16 (13540): Guest Log: net.ipv4.ip_forward = 1
2019-03-02 20:48:16 (13540): Guest Log: automount ...
2019-03-02 20:48:16 (13540): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-03-02 20:48:16 (13540): Guest Log: automount over.
2019-03-02 20:48:16 (13540): Guest Log: Setting hostname to boot2docker Done.
2019-03-02 20:48:16 (13540): Guest Log: Sat Mar  2 20:48:14 UTC 2019 dhcp -------------------------------
2019-03-02 20:48:21 (13540): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1071)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00 (1292)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1293)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1294)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1295)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1296)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1297)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1298)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1299)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1300)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1301)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1302)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1303)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1304)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1305)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1306)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input8 (1307)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input8/event6 (1308)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1309)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1310)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1311)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1312)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1313)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1314)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1315)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1316)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1317)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1318)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1319)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1320)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1321)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1322)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1325)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1326)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1327)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1328)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1329)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1330)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1331)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1332)
2019-03-02 20:48:21 (13540): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1333)
2019-03-02 20:48:22 (13540): Guest Log: Sat Mar  2 20:48:20 UTC 2019 dhcp -------------------------------
2019-03-02 20:48:22 (13540): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000065 main     Log opened 2019-03-02T20:48:20.572623000Z
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000567 main     OS Product: Linux
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000590 main     OS Release: 4.1.19-boot2docker
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000607 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-03-02 20:48:22 (13540): Guest Log: B00:00:00.000623 main     Executable: /sbin/VBoxServiceo
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000623 main     Process ID: 835
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000624 main     Package type: LINUX_64BITS_GENERIC
2019-03-02 20:48:22 (13540): Guest Log: ervice 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.001981 main     5.0.16 r105871 started. Verbose level = 0
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000065 main     Log opened 2019-03-02T20:48:20.572623000Z
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000567 main     OS Product: Linux
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000590 main     OS Release: 4.1.19-boot2docker
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000607 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000623 main     Executable: /sbin/VBoxService
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000623 main     Process ID: 835
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.007012 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.007045 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.000624 main     Package type: LINUX_64BITS_GENERIC
2019-03-02 20:48:22 (13540): Guest Log: 00:00:00.001981 main     5.0.16 r105871 started. Verbose level = 0
2019-03-02 20:48:22 (13540): Guest Log: Mounting BOINC shared/...
2019-03-02 20:48:23 (13540): Guest Log: -------------------
2019-03-02 20:48:23 (13540): Guest Log: Sun Mar  3 01:48:22 UTC 2019
2019-03-02 20:48:27 (13540): Guest Log: 00:00:05.011261 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-03-02 20:48:28 (13540): Guest Log: Sun Mar  3 01:48:27 UTC 2019
2019-03-02 20:48:28 (13540): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-03-02 20:48:28 (13540): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-03-02 20:48:28 (13540): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-03-02 20:48:28 (13540): Guest Log:        valid_lft forever preferred_lft forever
2019-03-02 20:48:28 (13540): Guest Log:     inet6 ::1/128 scope host 
2019-03-02 20:48:28 (13540): Guest Log:        valid_lft forever preferred_lft forever
2019-03-02 20:48:28 (13540): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-03-02 20:48:28 (13540): Guest Log:     link/ether be:e8:40:81:5a:42 brd ff:ff:ff:ff:ff:ff
2019-03-02 20:48:28 (13540): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-03-02 20:48:28 (13540): Guest Log:     link/ether 08:00:27:81:e0:00 brd ff:ff:ff:ff:ff:ff
2019-03-02 20:48:28 (13540): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-03-02 20:48:28 (13540): Guest Log:        valid_lft forever preferred_lft forever
2019-03-02 20:48:28 (13540): Guest Log:     inet6 fe80::a00:27ff:fe81:e000/64 scope link 
2019-03-02 20:48:28 (13540): Guest Log:        valid_lft forever preferred_lft forever
2019-03-02 20:48:28 (13540): Guest Log: -------------------
2019-03-02 20:48:28 (13540): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-03-02 20:48:28 (13540): Guest Log: Waiting for Docker daemon to start...
2019-03-02 20:48:29 (13540): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-03-02 20:48:29 (13540): Guest Log: Running boinc_app...
2019-03-02 20:48:29 (13540): Guest Log: Importing Docker image from BOINC...
2019-03-02 20:48:32 (13540): Guest Log: 00:00:10.012238 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-03-02 20:49:09 (13540): Guest Log: Prerun diagnostics...
2019-03-02 20:49:09 (13540): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-03-02 20:49:09 (13540): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        8 months ago        1.473 GB
2019-03-02 20:49:09 (13540): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-03-02 20:49:09 (13540): Guest Log: 1.4G	/var/lib/docker
2019-03-02 20:49:09 (13540): Guest Log:               total        used        free      shared  buff/cache   available
2019-03-02 20:49:09 (13540): Guest Log: Mem:           6204          57        4455        1634        1691        4457
2019-03-02 20:49:09 (13540): Guest Log: Swap:          1499           0        1499
2019-03-02 20:49:09 (13540): Guest Log: Prerun commands...
2019-03-02 20:49:09 (13540): Guest Log: Running... 
2019-03-02 20:49:09 (13540): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-03-02 20:49:09 (13540): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-03-02 20:49:10 (13540): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-02 20:49:10 (13540): Guest Log: 100  762k  100  762k    0     0  1482k      0 --:--:-- --:--:-- --:--:-- 1485k
2019-03-02 20:49:10 (13540): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-03-02 20:49:10 (13540): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-03-02 20:49:10 (13540): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-02 20:49:10 (13540): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-03-02 20:49:10 (13540): Guest Log: 100  1272  100  1272    0     0   9964      0 --:--:-- --:--:-- --:--:--  9937
2019-03-02 20:49:10 (13540): Guest Log: Postrun commands...
2019-03-02 20:49:10 (13540): Guest Log: boinc_app exited (0)
2019-03-02 20:49:10 (13540): Guest Log: Saving results...
2019-03-02 20:49:10 (13540): Guest Log: lammps_test.txt
2019-03-02 20:49:10 (13540): VM Completion File Detected.
2019-03-02 20:49:10 (13540): Powering off VM.
2019-03-02 20:49:11 (13540): Successfully stopped VM.
2019-03-02 20:49:11 (13540): Deregistering VM. (boinc_7c17b7292b5fbc1c, slot#3)
2019-03-02 20:49:11 (13540): Removing network bandwidth throttle group from VM.
2019-03-02 20:49:11 (13540): Removing storage controller(s) from VM.
2019-03-02 20:49:11 (13540): Removing VM from VirtualBox.
2019-03-02 20:49:11 (13540): Removing virtual ISO 9660 disk from VirtualBox.
20:49:16 (13540): called boinc_finish(0)

</stderr_txt>
]]>