Task 488457

Name boinc2docker_461_1586553141.709130_1
Workunit 225663
Created 10 Apr 2020, 21:12:26 UTC
Sent 11 Apr 2020, 6:27:38 UTC
Report deadline 18 Apr 2020, 6:27:38 UTC
Received 11 Apr 2020, 8:49:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 443
Run time 9 min 6 sec
CPU time 17 min 59 sec
Validate state Valid
Credit 16.03
Device peak FLOPS 11.17 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 92.87 MB
Peak swap size 103.70 MB
Peak disk usage 237.51 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2020-04-11 05:40:33 (8780): vboxwrapper (7.9.26200): starting
2020-04-11 05:40:33 (8780): Feature: Checkpoint interval offset (525 seconds)
2020-04-11 05:40:33 (8780): Detected: VirtualBox COM Interface (Version: 5.2.8)
2020-04-11 05:40:33 (8780): Detected: Minimum checkpoint interval (600.000000 seconds)
2020-04-11 05:40:33 (8780): Create VM. (boinc_96ca1bf34ebd60d8, slot#3)
2020-04-11 05:40:33 (8780): Updating drive controller type and model for desired configuration.
2020-04-11 05:40:33 (8780): Setting Memory Size for VM. (3293MB)
2020-04-11 05:40:33 (8780): Setting CPU Count for VM. (3)
2020-04-11 05:40:33 (8780): Setting Chipset Options for VM.
2020-04-11 05:40:33 (8780): Setting Boot Options for VM.
2020-04-11 05:40:33 (8780): Enabling VM Network Access.
2020-04-11 05:40:33 (8780): Setting Network Configuration for NAT.
2020-04-11 05:40:33 (8780): Disabling USB Support for VM.
2020-04-11 05:40:33 (8780): Disabling COM Port Support for VM.
2020-04-11 05:40:33 (8780): Disabling LPT Port Support for VM.
2020-04-11 05:40:33 (8780): Disabling Audio Support for VM.
2020-04-11 05:40:33 (8780): Disabling Clipboard Support for VM.
2020-04-11 05:40:33 (8780): Disabling Drag and Drop Support for VM.
2020-04-11 05:40:33 (8780): Adding storage controller(s) to VM.
2020-04-11 05:40:33 (8780): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2020-04-11 05:40:33 (8780): Adding VirtualBox Guest Additions to VM.
2020-04-11 05:40:33 (8780): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2020-04-11 05:40:33 (8780): Enabling shared directory for VM.
2020-04-11 05:40:33 (8780): Starting VM. (boinc_96ca1bf34ebd60d8, slot#3)
2020-04-11 05:40:41 (8780): Guest Log: BIOS: VirtualBox 5.2.8

2020-04-11 05:40:41 (8780): Guest Log: CPUID EDX: 0x178bfbff

2020-04-11 05:40:41 (8780): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2020-04-11 05:40:41 (8780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2020-04-11 05:40:41 (8780): Guest Log: BIOS: Boot from Hard Disk 0 failed

2020-04-11 05:40:41 (8780): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2020-04-11 05:40:41 (8780): Guest Log: BIOS: Booting from CD-ROM...

2020-04-11 05:40:41 (8780): Guest Log: BIOS: KBD: unsupported int 16h function 03

2020-04-11 05:40:41 (8780): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2020-04-11 05:40:41 (8780): Successfully started VM. (PID = '7600')
2020-04-11 05:40:41 (8780): Reporting VM Process ID to BOINC.
2020-04-11 05:40:46 (8780): VM state change detected. (old = 'poweroff', new = 'running')
2020-04-11 05:40:51 (8780): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2020-04-11 05:40:51 (8780): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2020-04-11 05:40:51 (8780): Guest Log: net.ipv4.ip_forward = 1

2020-04-11 05:40:51 (8780): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2020-04-11 05:40:51 (8780): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2020-04-11 05:40:51 (8780): Guest Log: sysctl: "cannot stat %s" is an unknown key

2020-04-11 05:40:51 (8780): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2020-04-11 05:40:51 (8780): Guest Log: Segmentation fault

2020-04-11 05:40:51 (8780): Guest Log: automount ...

2020-04-11 05:40:51 (8780): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2020-04-11 05:40:51 (8780): Guest Log: automount over.

2020-04-11 05:40:51 (8780): Guest Log: Setting hostname to boot2docker Done.

2020-04-11 05:40:51 (8780): Guest Log: Sat Apr 11 05:40:47 UTC 2020 dhcp -------------------------------

2020-04-11 05:40:56 (8780): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1097)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00 (1331)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1332)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1333)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1334)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1335)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1336)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1337)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1338)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1339)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1340)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1341)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1342)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1343)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1344)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1345)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1346)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1347)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1348)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1349)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1350)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1351)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1352)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1353)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1354)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1355)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1356)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1357)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1358)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1359)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1360)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1361)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1362)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1363)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1364)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1365)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1366)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1367)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1368)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1369)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1370)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1371)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1372)

2020-04-11 05:40:56 (8780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1373)

2020-04-11 05:40:56 (8780): Guest Log: Sat Apr 11 05:40:53 UTC 2020 dhcp -------------------------------

2020-04-11 05:40:56 (8780): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000047 main     Log opened 2020-04-11T05:40:53.432644000Z

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000120 main     OS Product: Linux

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000149 main     OS Release: 4.1.19-boot2docker

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000174 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2020-04-11 05:40:56 (8780): Guest Log: VBo00:00:00.000211 main     Executable: /sbin/VBoxService

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000211 main     ProcS

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000212 main     Package type: LINUX_64BITS_GENERIC

2020-04-11 05:40:56 (8780): Guest Log: vice 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.001912 main     5.0.16 r105871 started. Verbose level = 0

2020-04-11 05:40:56 (8780): Guest Log: :00:00.000047 main     Log opened 2020-04-11T05:40:53.432644000Z

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000120 main     OS Product: Linux

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.004072 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.004122 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000149 main     OS Release: 4.1.19-boot2docker

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000174 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000211 main     Executable: /sbin/VBoxService

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000211 main     Process ID: 964

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.000212 main     Package type: LINUX_64BITS_GENERIC

2020-04-11 05:40:56 (8780): Guest Log: 00:00:00.001912 main     5.0.16 r105871 started. Verbose level = 0

2020-04-11 05:40:56 (8780): Guest Log: Mounting BOINC shared/...

2020-04-11 05:40:56 (8780): Guest Log: -------------------

2020-04-11 05:40:56 (8780): Guest Log: Sat Apr 11 08:40:54 UTC 2020

2020-04-11 05:40:56 (8780): Preference change detected
2020-04-11 05:40:56 (8780): Setting CPU throttle for VM. (100%)
2020-04-11 05:40:56 (8780): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2020-04-11 05:41:01 (8780): Guest Log: 00:00:05.005712 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2020-04-11 05:41:01 (8780): Guest Log: Sat Apr 11 08:41:00 UTC 2020

2020-04-11 05:41:01 (8780): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2020-04-11 05:41:01 (8780): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2020-04-11 05:41:01 (8780): Guest Log:     inet 127.0.0.1/8 scope host lo

2020-04-11 05:41:01 (8780): Guest Log:        valid_lft forever preferred_lft forever

2020-04-11 05:41:01 (8780): Guest Log:     inet6 ::1/128 scope host 

2020-04-11 05:41:01 (8780): Guest Log:        valid_lft forever preferred_lft forever

2020-04-11 05:41:01 (8780): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2020-04-11 05:41:01 (8780): Guest Log:     link/ether 8e:c1:0c:9b:bd:a5 brd ff:ff:ff:ff:ff:ff

2020-04-11 05:41:01 (8780): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2020-04-11 05:41:01 (8780): Guest Log:     link/ether 08:00:27:0f:fa:b7 brd ff:ff:ff:ff:ff:ff

2020-04-11 05:41:01 (8780): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2020-04-11 05:41:01 (8780): Guest Log:        valid_lft forever preferred_lft forever

2020-04-11 05:41:01 (8780): Guest Log:     inet6 fe80::a00:27ff:fe0f:fab7/64 scope link 

2020-04-11 05:41:01 (8780): Guest Log:        valid_lft forever preferred_lft forever

2020-04-11 05:41:01 (8780): Guest Log: -------------------

2020-04-11 05:41:01 (8780): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2020-04-11 05:41:01 (8780): Guest Log: Waiting for Docker daemon to start...

2020-04-11 05:41:01 (8780): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2020-04-11 05:41:01 (8780): Guest Log: Running boinc_app...

2020-04-11 05:41:01 (8780): Guest Log: Importing Docker image from BOINC...

2020-04-11 05:41:06 (8780): Guest Log: 00:00:10.006867 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2020-04-11 05:41:26 (8780): Guest Log: Prerun diagnostics...

2020-04-11 05:41:26 (8780): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2020-04-11 05:41:26 (8780): Guest Log: carlosred/autodock-vina   latest              cb48f45035aa        11 days ago         698.4 MB

2020-04-11 05:41:26 (8780): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2020-04-11 05:41:26 (8780): Guest Log: 706.6M	/var/lib/docker

2020-04-11 05:41:26 (8780): Guest Log:               total        used        free      shared  buff/cache   available

2020-04-11 05:41:26 (8780): Guest Log: Mem:           3224          52        2252         870         919        2255

2020-04-11 05:41:26 (8780): Guest Log: Swap:           755           0         755

2020-04-11 05:41:26 (8780): Guest Log: Prerun commands...

2020-04-11 05:41:26 (8780): Guest Log: Running... 

2020-04-11 05:41:26 (8780): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2020-04-11 05:41:26 (8780): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2020-04-11 05:41:26 (8780): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2020-04-11 05:41:26 (8780): Guest Log:   7  106k    7  8379    0     0  21575      0  0:00:05 --:--:--  0:00:05 37075

2020-04-11 05:41:26 (8780): Guest Log: 100  106k  100  106k    0     0   102k      0  0:00:01  0:00:01 --:--:--  121k

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000165251769_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000163585549_1_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000157248409_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000163814293_3_T2.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000158703399_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000158381727_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000168086152_3_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000168058327_4_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000168254115_5_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000167862843_5_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000158653496_1_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000158334060_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000167942187_4_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000159300272_4_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000157993294_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000167761833_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000157046993_1_T2.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000158742712_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000163818499_1_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000163393092_1_T2.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000168086151_2_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000163814293_1_T2.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000168115232_5_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000157767425_1_T2.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/PV-000167751226_1_T1.pdbqt

2020-04-11 05:41:26 (8780): Guest Log: data_61879/5r80_apo.pdbqt

2020-04-11 05:47:11 (8780): Guest Log: An internal error occurred in ../../../src/lib/tree.h(101). 

2020-04-11 05:47:11 (8780): Guest Log: Please contact the author, Dr. Oleg Trott <ot14@columbia.edu>, so

2020-04-11 05:47:11 (8780): Guest Log: that this problem can be resolved. The reproducibility of the

2020-04-11 05:47:11 (8780): Guest Log: error may be vital, so please remember to include the following in

2020-04-11 05:47:11 (8780): Guest Log: your problem report:

2020-04-11 05:47:11 (8780): Guest Log: * the EXACT error message,

2020-04-11 05:47:11 (8780): Guest Log: * your version of the program,

2020-04-11 05:47:11 (8780): Guest Log: * the type of computer system you are running it on,

2020-04-11 05:47:11 (8780): Guest Log: * all command line options,

2020-04-11 05:47:11 (8780): Guest Log: * configuration file (if used),

2020-04-11 05:47:11 (8780): Guest Log: * ligand file as PDBQT,

2020-04-11 05:47:11 (8780): Guest Log: * receptor file as PDBQT,

2020-04-11 05:47:11 (8780): Guest Log: * flexible side chains file as PDBQT (if used),

2020-04-11 05:47:11 (8780): Guest Log: * output file as PDBQT (if any),

2020-04-11 05:47:11 (8780): Guest Log: * input (if possible),

2020-04-11 05:47:11 (8780): Guest Log: * random seed the program used (this is printed when the program starts).

2020-04-11 05:47:11 (8780): Guest Log: Thank you!

2020-04-11 05:48:16 (8780): Guest Log: Parse error on line 22 in file "PV-000168058327_4_T1.pdbqt": ATOM syntax incorrect: "0.00  0." is not a valid charge

2020-04-11 05:49:21 (8780): Guest Log: An internal error occurred in ../../../src/lib/tree.h(101). 

2020-04-11 05:49:21 (8780): Guest Log: Please contact the author, Dr. Oleg Trott <ot14@columbia.edu>, so

2020-04-11 05:49:21 (8780): Guest Log: that this problem can be resolved. The reproducibility of the

2020-04-11 05:49:21 (8780): Guest Log: error may be vital, so please remember to include the following in

2020-04-11 05:49:21 (8780): Guest Log: your problem report:

2020-04-11 05:49:21 (8780): Guest Log: * the EXACT error message,

2020-04-11 05:49:21 (8780): Guest Log: * your version of the program,

2020-04-11 05:49:21 (8780): Guest Log: * the type of computer system you are running it on,

2020-04-11 05:49:21 (8780): Guest Log: * all command line options,

2020-04-11 05:49:21 (8780): Guest Log: * configuration file (if used),

2020-04-11 05:49:21 (8780): Guest Log: * ligand file as PDBQT,

2020-04-11 05:49:21 (8780): Guest Log: * receptor file as PDBQT,

2020-04-11 05:49:21 (8780): Guest Log: * flexible side chains file as PDBQT (if used),

2020-04-11 05:49:21 (8780): Guest Log: * output file as PDBQT (if any),

2020-04-11 05:49:21 (8780): Guest Log: * input (if possible),

2020-04-11 05:49:21 (8780): Guest Log: * random seed the program used (this is printed when the program starts).

2020-04-11 05:49:21 (8780): Guest Log: Thank you!

2020-04-11 05:49:26 (8780): Guest Log: Postrun commands...

2020-04-11 05:49:26 (8780): Guest Log: boinc_app exited (0)

2020-04-11 05:49:26 (8780): Guest Log: Saving results...

2020-04-11 05:49:26 (8780): Guest Log: 5r80_apo.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000157046993_1_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000157248409_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000157767425_1_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000157993294_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000158334060_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000158381727_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000158653496_1_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000158703399_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000158742712_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000159300272_4_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000163393092_1_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000163585549_1_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000163814293_1_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000163814293_3_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000163818499_1_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000165251769_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000167751226_1_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000167761833_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000167862843_5_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000167942187_4_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000168058327_4_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000168086151_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000168086152_3_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000168115232_5_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: PV-000168254115_5_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: data_61879_log.txt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000157046993_1_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000157248409_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000157767425_1_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000157993294_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000158334060_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000158381727_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000158653496_1_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000158703399_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000158742712_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000159300272_4_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000163393092_1_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000163585549_1_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000163814293_1_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000163814293_3_T2.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000163818499_1_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000165251769_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000167761833_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000167862843_5_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000167942187_4_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000168086151_2_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000168086152_3_T1.pdbqt

2020-04-11 05:49:26 (8780): Guest Log: out_PV-000168115232_5_T1.pdbqt

2020-04-11 05:49:26 (8780): VM Completion File Detected.
2020-04-11 05:49:26 (8780): Powering off VM.
2020-04-11 05:49:28 (8780): Successfully stopped VM.
2020-04-11 05:49:33 (8780): Deregistering VM. (boinc_96ca1bf34ebd60d8, slot#3)
2020-04-11 05:49:33 (8780): Removing virtual disk drive(s) from VM.
2020-04-11 05:49:33 (8780): Removing network bandwidth throttle group from VM.
2020-04-11 05:49:33 (8780): Removing storage controller(s) from VM.
2020-04-11 05:49:33 (8780): Removing VM from VirtualBox.
05:49:38 (8780): called boinc_finish(0)

</stderr_txt>
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