Task 345056

Name boinc2docker_11340_1586204207.440820_1
Workunit 156763
Created 6 Apr 2020, 20:16:51 UTC
Sent 6 Apr 2020, 20:17:04 UTC
Report deadline 13 Apr 2020, 20:17:04 UTC
Received 7 Apr 2020, 10:18:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 443
Run time 9 min 21 sec
CPU time 18 min 7 sec
Validate state Valid
Credit 12.30
Device peak FLOPS 11.17 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 92.73 MB
Peak swap size 103.29 MB
Peak disk usage 237.51 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2020-04-07 07:08:43 (9820): vboxwrapper (7.9.26200): starting
2020-04-07 07:08:43 (9820): Feature: Checkpoint interval offset (587 seconds)
2020-04-07 07:08:43 (9820): Detected: VirtualBox COM Interface (Version: 5.2.8)
2020-04-07 07:08:43 (9820): Detected: Minimum checkpoint interval (600.000000 seconds)
2020-04-07 07:08:43 (9820): Create VM. (boinc_ff2418c45b13972f, slot#1)
2020-04-07 07:08:43 (9820): Updating drive controller type and model for desired configuration.
2020-04-07 07:08:43 (9820): Setting Memory Size for VM. (3293MB)
2020-04-07 07:08:43 (9820): Setting CPU Count for VM. (3)
2020-04-07 07:08:43 (9820): Setting Chipset Options for VM.
2020-04-07 07:08:43 (9820): Setting Boot Options for VM.
2020-04-07 07:08:43 (9820): Enabling VM Network Access.
2020-04-07 07:08:43 (9820): Setting Network Configuration for NAT.
2020-04-07 07:08:43 (9820): Disabling USB Support for VM.
2020-04-07 07:08:43 (9820): Disabling COM Port Support for VM.
2020-04-07 07:08:43 (9820): Disabling LPT Port Support for VM.
2020-04-07 07:08:43 (9820): Disabling Audio Support for VM.
2020-04-07 07:08:43 (9820): Disabling Clipboard Support for VM.
2020-04-07 07:08:43 (9820): Disabling Drag and Drop Support for VM.
2020-04-07 07:08:43 (9820): Adding storage controller(s) to VM.
2020-04-07 07:08:43 (9820): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2020-04-07 07:08:43 (9820): Adding VirtualBox Guest Additions to VM.
2020-04-07 07:08:43 (9820): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2020-04-07 07:08:43 (9820): Enabling shared directory for VM.
2020-04-07 07:08:43 (9820): Starting VM. (boinc_ff2418c45b13972f, slot#1)
2020-04-07 07:08:51 (9820): Guest Log: BIOS: VirtualBox 5.2.8

2020-04-07 07:08:51 (9820): Guest Log: CPUID EDX: 0x178bfbff

2020-04-07 07:08:51 (9820): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2020-04-07 07:08:51 (9820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2020-04-07 07:08:51 (9820): Guest Log: BIOS: Boot from Hard Disk 0 failed

2020-04-07 07:08:51 (9820): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2020-04-07 07:08:51 (9820): Guest Log: BIOS: Booting from CD-ROM...

2020-04-07 07:08:51 (9820): Guest Log: BIOS: KBD: unsupported int 16h function 03

2020-04-07 07:08:51 (9820): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2020-04-07 07:08:51 (9820): Successfully started VM. (PID = '4008')
2020-04-07 07:08:51 (9820): Reporting VM Process ID to BOINC.
2020-04-07 07:08:56 (9820): VM state change detected. (old = 'poweroff', new = 'running')
2020-04-07 07:09:01 (9820): Guest Log: net.ipv4.ip_forward = 1

2020-04-07 07:09:01 (9820): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2020-04-07 07:09:01 (9820): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2020-04-07 07:09:01 (9820): Guest Log: sysctl: "cannot stat %s" is an unknown key

2020-04-07 07:09:01 (9820): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2020-04-07 07:09:01 (9820): Guest Log: Segmentation fault

2020-04-07 07:09:01 (9820): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2020-04-07 07:09:01 (9820): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2020-04-07 07:09:01 (9820): Guest Log: automount ...

2020-04-07 07:09:01 (9820): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2020-04-07 07:09:01 (9820): Guest Log: automount over.

2020-04-07 07:09:01 (9820): Guest Log: Setting hostname to boot2docker Done.

2020-04-07 07:09:01 (9820): Guest Log: Tue Apr  7 07:08:57 UTC 2020 dhcp -------------------------------

2020-04-07 07:09:06 (9820): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1101)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00 (1334)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1335)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1336)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1337)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1338)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1339)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1340)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1341)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1342)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1343)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1344)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1345)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1346)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1347)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1348)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1349)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1350)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event5 (1351)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1352)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1353)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1354)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1355)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1356)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1357)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1358)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1359)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1360)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1361)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1362)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1363)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1364)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1365)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1366)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1367)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1368)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1369)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1370)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1371)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1372)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1373)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1374)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1375)

2020-04-07 07:09:06 (9820): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1376)

2020-04-07 07:09:06 (9820): Guest Log: Tue Apr  7 07:09:03 UTC 2020 dhcp -------------------------------

2020-04-07 07:09:06 (9820): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000055 main     Log opened 2020-04-07T07:09:03.360146000Z

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000131 main     OS Product: Linux

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000161 main     OS Release: 4.1.19-boot2docker

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000188 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2020-04-07 07:09:06 (9820): Guest Log: VBo00:00:00.000225 main     Executable: /sbin/VBoxService

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000226 main     Process ID: 984

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000227 main     Package type: LINUX_64BITS_GENERIC

2020-04-07 07:09:06 (9820): Guest Log: vice 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.002128 main     5.0.16 r105871 started. Verbose level = 0

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000055 main     Log opened 2020-04-07T07:09:03.360146000Z

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000131 main     OS Product: Linux

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.005354 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00:00.005405 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2020-04-07 07:09:06 (9820): Guest Log: :00.000161 main     OS Release: 4.1.19-boot2docker

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000188 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000225 main     Executable: /sbin/VBoxService

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000226 main     Process ID: 984

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.000227 main     Package type: LINUX_64BITS_GENERIC

2020-04-07 07:09:06 (9820): Guest Log: 00:00:00.002128 main     5.0.16 r105871 started. Verbose level = 0

2020-04-07 07:09:06 (9820): Guest Log: Mounting BOINC shared/...

2020-04-07 07:09:06 (9820): Guest Log: -------------------

2020-04-07 07:09:06 (9820): Guest Log: Tue Apr  7 10:09:06 UTC 2020

2020-04-07 07:09:06 (9820): Preference change detected
2020-04-07 07:09:06 (9820): Setting CPU throttle for VM. (100%)
2020-04-07 07:09:06 (9820): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2020-04-07 07:09:11 (9820): Guest Log: 00:00:05.010726 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2020-04-07 07:09:11 (9820): Guest Log: Tue Apr  7 10:09:10 UTC 2020

2020-04-07 07:09:11 (9820): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2020-04-07 07:09:11 (9820): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2020-04-07 07:09:11 (9820): Guest Log:     inet 127.0.0.1/8 scope host lo

2020-04-07 07:09:11 (9820): Guest Log:        valid_lft forever preferred_lft forever

2020-04-07 07:09:11 (9820): Guest Log:     inet6 ::1/128 scope host 

2020-04-07 07:09:11 (9820): Guest Log:        valid_lft forever preferred_lft forever

2020-04-07 07:09:11 (9820): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2020-04-07 07:09:11 (9820): Guest Log:     link/ether 5a:73:49:d9:3f:77 brd ff:ff:ff:ff:ff:ff

2020-04-07 07:09:11 (9820): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2020-04-07 07:09:11 (9820): Guest Log:     link/ether 08:00:27:e7:01:12 brd ff:ff:ff:ff:ff:ff

2020-04-07 07:09:11 (9820): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2020-04-07 07:09:11 (9820): Guest Log:        valid_lft forever preferred_lft forever

2020-04-07 07:09:11 (9820): Guest Log:     inet6 fe80::a00:27ff:fee7:112/64 scope link 

2020-04-07 07:09:11 (9820): Guest Log:        valid_lft forever preferred_lft forever

2020-04-07 07:09:11 (9820): Guest Log: -------------------

2020-04-07 07:09:11 (9820): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2020-04-07 07:09:11 (9820): Guest Log: Waiting for Docker daemon to start...

2020-04-07 07:09:16 (9820): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2020-04-07 07:09:16 (9820): Guest Log: Running boinc_app...

2020-04-07 07:09:16 (9820): Guest Log: Importing Docker image from BOINC...

2020-04-07 07:09:16 (9820): Guest Log: 00:00:10.012106 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2020-04-07 07:09:36 (9820): Guest Log: Prerun diagnostics...

2020-04-07 07:09:36 (9820): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2020-04-07 07:09:36 (9820): Guest Log: carlosred/autodock-vina   latest              cb48f45035aa        7 days ago          698.4 MB

2020-04-07 07:09:36 (9820): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2020-04-07 07:09:36 (9820): Guest Log: 706.6M	/var/lib/docker

2020-04-07 07:09:36 (9820): Guest Log:               total        used        free      shared  buff/cache   available

2020-04-07 07:09:36 (9820): Guest Log: Mem:           3224          51        2252         870         919        2255

2020-04-07 07:09:36 (9820): Guest Log: Swap:           753           0         753

2020-04-07 07:09:36 (9820): Guest Log: Prerun commands...

2020-04-07 07:09:36 (9820): Guest Log: Running... 

2020-04-07 07:09:36 (9820): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2020-04-07 07:09:36 (9820): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2020-04-07 07:09:36 (9820): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2020-04-07 07:09:36 (9820): Guest Log: 100  105k  100  105k    0     0   130k      0 --:--:-- --:--:-- --:--:--  159k

2020-04-07 07:09:36 (9820): Guest Log: 100  105k  100  105k    0     0   129k      0 --:--:-- --:--:-- --:--:--  157k

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001840098501_2_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001838165765_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001827372937_2_T2.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/Z2752881699_4_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/Z1640823467_2_T7.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001820633958_1_T5.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001843755723_5_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001856533221_2_T7.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001836332764_1_T4.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001842772397_2_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001853293507_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001849367638_2_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001842772397_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001832678291_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001850860915_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001837622648_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001836329287_1_T2.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001842772514_2_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001823642778_1_T7.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001856563134_2_T3.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001840695435_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001837665646_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001851456206_3_T5.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001852418425_4_T3.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/PV-001856563111_1_T1.pdbqt

2020-04-07 07:09:36 (9820): Guest Log: data_11597/5r80_apo.pdbqt

2020-04-07 07:11:07 (9820): Guest Log: Parse error on line 46 in file "PV-001836329287_1_T2.pdbqt": ATOM syntax incorrect: "B" is not a valid AutoDock type. Note that AutoDock atom types are case-sensitive.

2020-04-07 07:14:12 (9820): Guest Log: An internal error occurred in ../../../src/lib/tree.h(101). 

2020-04-07 07:14:12 (9820): Guest Log: Please contact the author, Dr. Oleg Trott <ot14@columbia.edu>, so

2020-04-07 07:14:12 (9820): Guest Log: that this problem can be resolved. The reproducibility of the

2020-04-07 07:14:12 (9820): Guest Log: error may be vital, so please remember to include the following in

2020-04-07 07:14:12 (9820): Guest Log: your problem report:

2020-04-07 07:14:12 (9820): Guest Log: * the EXACT error message,

2020-04-07 07:14:12 (9820): Guest Log: * your version of the program,

2020-04-07 07:14:12 (9820): Guest Log: * the type of computer system you are running it on,

2020-04-07 07:14:12 (9820): Guest Log: * all command line options,

2020-04-07 07:14:12 (9820): Guest Log: * configuration file (if used),

2020-04-07 07:14:12 (9820): Guest Log: * ligand file as PDBQT,

2020-04-07 07:14:12 (9820): Guest Log: * receptor file as PDBQT,

2020-04-07 07:14:12 (9820): Guest Log: * flexible side chains file as PDBQT (if used),

2020-04-07 07:14:12 (9820): Guest Log: * output file as PDBQT (if any),

2020-04-07 07:14:12 (9820): Guest Log: * input (if possible),

2020-04-07 07:14:12 (9820): Guest Log: * random seed the program used (this is printed when the program starts).

2020-04-07 07:14:12 (9820): Guest Log: Thank you!

2020-04-07 07:17:52 (9820): Guest Log: Postrun commands...

2020-04-07 07:17:52 (9820): Guest Log: boinc_app exited (0)

2020-04-07 07:17:52 (9820): Guest Log: Saving results...

2020-04-07 07:17:52 (9820): Guest Log: 5r80_apo.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001820633958_1_T5.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001823642778_1_T7.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001827372937_2_T2.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001832678291_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001836329287_1_T2.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001836332764_1_T4.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001837622648_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001837665646_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001838165765_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001840098501_2_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001840695435_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001842772397_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001842772397_2_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001842772514_2_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001843755723_5_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001849367638_2_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001850860915_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001851456206_3_T5.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001852418425_4_T3.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001853293507_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001856533221_2_T7.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001856563111_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: PV-001856563134_2_T3.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: Z1640823467_2_T7.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: Z2752881699_4_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: data_11597_log.txt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001820633958_1_T5.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001823642778_1_T7.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001827372937_2_T2.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001832678291_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001836332764_1_T4.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001837622648_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001837665646_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001838165765_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001840098501_2_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001840695435_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001842772397_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001842772397_2_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001842772514_2_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001849367638_2_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001850860915_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001851456206_3_T5.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001852418425_4_T3.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001853293507_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001856533221_2_T7.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001856563111_1_T1.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_PV-001856563134_2_T3.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_Z1640823467_2_T7.pdbqt

2020-04-07 07:17:52 (9820): Guest Log: out_Z2752881699_4_T1.pdbqt

2020-04-07 07:17:52 (9820): VM Completion File Detected.
2020-04-07 07:17:52 (9820): Powering off VM.
2020-04-07 07:17:53 (9820): Successfully stopped VM.
2020-04-07 07:17:58 (9820): Deregistering VM. (boinc_ff2418c45b13972f, slot#1)
2020-04-07 07:17:58 (9820): Removing virtual disk drive(s) from VM.
2020-04-07 07:17:58 (9820): Removing network bandwidth throttle group from VM.
2020-04-07 07:17:58 (9820): Removing storage controller(s) from VM.
2020-04-07 07:17:58 (9820): Removing VM from VirtualBox.
07:18:03 (9820): called boinc_finish(0)

</stderr_txt>
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