Task 248951

Name boinc2docker_18004_1564955039.560446_2
Workunit 109294
Created 6 Aug 2019, 18:48:25 UTC
Sent 6 Aug 2019, 18:51:37 UTC
Report deadline 13 Aug 2019, 18:51:37 UTC
Received 6 Aug 2019, 18:57:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 2022
Run time 2 min 25 sec
CPU time 2 min 48 sec
Validate state Valid
Credit 10.20
Device peak FLOPS 9.43 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 192.09 MB
Peak swap size 6,476.83 MB
Peak disk usage 676.99 MB

Stderr output

<core_client_version>7.9.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-08-06 14:46:11 (30252): vboxwrapper (7.7.26197): starting
2019-08-06 14:46:11 (30252): Feature: Checkpoint interval offset (412 seconds)
2019-08-06 14:46:11 (30252): Detected: VirtualBox VboxManage Interface (Version: 5.1.22)
2019-08-06 14:46:11 (30252): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-06 14:46:12 (30252): Create VM. (boinc_5d406d7355fee2f9, slot#4)
2019-08-06 14:46:12 (30252): Updating drive controller type and model for desired configuration.
2019-08-06 14:46:12 (30252): Setting Memory Size for VM. (6392MB)
2019-08-06 14:46:12 (30252): Setting CPU Count for VM. (4)
2019-08-06 14:46:12 (30252): Setting Chipset Options for VM.
2019-08-06 14:46:12 (30252): Setting Boot Options for VM.
2019-08-06 14:46:12 (30252): Setting Network Configuration for NAT.
2019-08-06 14:46:12 (30252): Enabling VM Network Access.
2019-08-06 14:46:13 (30252): Disabling USB Support for VM.
2019-08-06 14:46:13 (30252): Disabling COM Port Support for VM.
2019-08-06 14:46:13 (30252): Disabling LPT Port Support for VM.
2019-08-06 14:46:13 (30252): Disabling Audio Support for VM.
2019-08-06 14:46:13 (30252): Disabling Clipboard Support for VM.
2019-08-06 14:46:13 (30252): Disabling Drag and Drop Support for VM.
2019-08-06 14:46:13 (30252): Adding storage controller(s) to VM.
2019-08-06 14:46:13 (30252): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-08-06 14:46:13 (30252): Adding VirtualBox Guest Additions to VM.
2019-08-06 14:46:14 (30252): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-08-06 14:46:14 (30252): Enabling shared directory for VM.
2019-08-06 14:46:14 (30252): Starting VM. (boinc_5d406d7355fee2f9, slot#4)
2019-08-06 14:46:15 (30252): Successfully started VM. (PID = '30687')
2019-08-06 14:46:15 (30252): Reporting VM Process ID to BOINC.
2019-08-06 14:46:15 (30252): Guest Log: BIOS: VirtualBox 5.1.22
2019-08-06 14:46:15 (30252): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-06 14:46:16 (30252): Preference change detected
2019-08-06 14:46:16 (30252): Setting CPU throttle for VM. (100%)
2019-08-06 14:46:16 (30252): Setting checkpoint interval to 3000 seconds. (Higher value of (Preference: 3000 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-06 14:46:18 (30252): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-08-06 14:46:18 (30252): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-08-06 14:46:18 (30252): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-08-06 14:46:18 (30252): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-08-06 14:46:18 (30252): Guest Log: BIOS: Booting from CD-ROM...
2019-08-06 14:46:21 (30252): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-08-06 14:46:21 (30252): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-08-06 14:46:36 (30252): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-08-06 14:46:36 (30252): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-08-06 14:46:36 (30252): Guest Log: net.ipv4.ip_forward = 1
2019-08-06 14:46:36 (30252): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-08-06 14:46:36 (30252): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-08-06 14:46:36 (30252): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-08-06 14:46:36 (30252): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-08-06 14:46:36 (30252): Guest Log: Segmentation fault
2019-08-06 14:46:36 (30252): Guest Log: automount ...
2019-08-06 14:46:41 (30252): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-08-06 14:46:41 (30252): Guest Log: automount over.
2019-08-06 14:46:41 (30252): Guest Log: Setting hostname to boot2docker Done.
2019-08-06 14:46:41 (30252): Guest Log: Tue Aug  6 14:46:38 UTC 2019 dhcp -------------------------------
2019-08-06 14:46:45 (30252): Guest Log: Tue Aug  6 14:46:42 UTC 2019 dhcp -------------------------------
2019-08-06 14:46:45 (30252): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000220 main     Log opened 2019-08-06T14:46:42.964161000Z
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000483 main     OS Product: Linux
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000515 main     OS Release: 4.1.19-boot2docker
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000543 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000575 main     Executable: /sbin/VBoxService
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000576 main     Process ID: 866
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000577 main     Package type: LINUX_64BITS_GENERIC
2019-08-06 14:46:45 (30252): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.002510 main     5.0.16 r105871 started. Verbose level = 0
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000220 main     Log opened 2019-08-06T14:46:42.964161000Z
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000483 main     OS Product: Linux
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000515 main     OS Release: 4.1.19-boot2docker
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000543 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000575 main     Executable: /sbin/VBoxService
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000576 main     Process ID: 866
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.000577 main     Package type: LINUX_64BITS_GENERIC
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.002510 main     5.0.16 r105871 started. Verbose level = 0
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.014258 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-08-06 14:46:45 (30252): Guest Log: 00:00:00.014441 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-08-06 14:46:45 (30252): Guest Log: Mounting BOINC shared/...
2019-08-06 14:46:50 (30252): Guest Log: -------------------
2019-08-06 14:46:50 (30252): Guest Log: Tue Aug  6 19:46:48 UTC 2019
2019-08-06 14:46:51 (30252): Guest Log: 00:00:05.016654 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-08-06 14:46:54 (30252): Guest Log: Tue Aug  6 19:46:53 UTC 2019
2019-08-06 14:46:54 (30252): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-08-06 14:46:54 (30252): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-08-06 14:46:54 (30252): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-08-06 14:46:54 (30252): Guest Log:        valid_lft forever preferred_lft forever
2019-08-06 14:46:54 (30252): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-08-06 14:46:54 (30252): Guest Log:     link/ether b2:c5:f2:3b:1c:7e brd ff:ff:ff:ff:ff:ff
2019-08-06 14:46:54 (30252): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-08-06 14:46:54 (30252): Guest Log:     link/ether 08:00:27:5b:d9:c7 brd ff:ff:ff:ff:ff:ff
2019-08-06 14:46:54 (30252): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-08-06 14:46:54 (30252): Guest Log:        valid_lft forever preferred_lft forever
2019-08-06 14:46:54 (30252): Guest Log: -------------------
2019-08-06 14:46:54 (30252): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-08-06 14:46:54 (30252): Guest Log: Waiting for Docker daemon to start...
2019-08-06 14:46:55 (30252): Guest Log: 00:00:10.017536 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-08-06 14:46:56 (30252): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-08-06 14:46:56 (30252): Guest Log: Running boinc_app...
2019-08-06 14:46:56 (30252): Guest Log: Importing Docker image from BOINC...
2019-08-06 14:48:25 (30252): Guest Log: Prerun diagnostics...
2019-08-06 14:48:25 (30252): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-08-06 14:48:25 (30252): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        13 months ago       1.473 GB
2019-08-06 14:48:25 (30252): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-08-06 14:48:25 (30252): Guest Log: 1.4G	/var/lib/docker
2019-08-06 14:48:25 (30252): Guest Log:               total        used        free      shared  buff/cache   available
2019-08-06 14:48:25 (30252): Guest Log: Mem:           6204          63        4448        1634        1692        4451
2019-08-06 14:48:25 (30252): Guest Log: Swap:          1499           0        1499
2019-08-06 14:48:25 (30252): Guest Log: Prerun commands...
2019-08-06 14:48:25 (30252): Guest Log: Running... 
2019-08-06 14:48:26 (30252): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-08-06 14:48:26 (30252): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-08-06 14:48:28 (30252): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-08-06 14:48:28 (30252): Guest Log:  17  762k   17  136k    0     0   445k      0  0:00:01 --:--:--  0:00:01  464k
2019-08-06 14:48:28 (30252): Guest Log: 100  762k  100  762k    0     0   710k      0  0:00:01  0:00:01 --:--:--  719k
2019-08-06 14:48:28 (30252): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-08-06 14:48:28 (30252): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-08-06 14:48:28 (30252): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-08-06 14:48:28 (30252): Guest Log: 100  1272  100  1272    0     0  10277      0 --:--:-- --:--:-- --:--:-- 10341
2019-08-06 14:48:28 (30252): Guest Log: Postrun commands...
2019-08-06 14:48:28 (30252): Guest Log: boinc_app exited (0)
2019-08-06 14:48:28 (30252): Guest Log: Saving results...
2019-08-06 14:48:28 (30252): Guest Log: lammps_test.txt
2019-08-06 14:48:28 (30252): VM Completion File Detected.
2019-08-06 14:48:28 (30252): Powering off VM.
2019-08-06 14:48:30 (30252): Successfully stopped VM.
2019-08-06 14:48:30 (30252): Deregistering VM. (boinc_5d406d7355fee2f9, slot#4)
2019-08-06 14:48:30 (30252): Removing network bandwidth throttle group from VM.
2019-08-06 14:48:30 (30252): Removing storage controller(s) from VM.
2019-08-06 14:48:30 (30252): Removing VM from VirtualBox.
2019-08-06 14:48:30 (30252): Removing virtual ISO 9660 disk from VirtualBox.
14:48:35 (30252): called boinc_finish(0)

</stderr_txt>
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