Task 248950

Name boinc2docker_16871_1564955029.606289_2
Workunit 109262
Created 6 Aug 2019, 18:48:25 UTC
Sent 6 Aug 2019, 18:51:37 UTC
Report deadline 13 Aug 2019, 18:51:37 UTC
Received 6 Aug 2019, 18:57:28 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 2022
Run time 2 min 23 sec
CPU time 2 min 55 sec
Validate state Valid
Credit 8.72
Device peak FLOPS 9.43 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 188.71 MB
Peak swap size 6,310.58 MB
Peak disk usage 676.99 MB

Stderr output

<core_client_version>7.9.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-08-06 14:45:55 (29616): vboxwrapper (7.7.26197): starting
2019-08-06 14:45:55 (29616): Feature: Checkpoint interval offset (453 seconds)
2019-08-06 14:45:55 (29616): Detected: VirtualBox VboxManage Interface (Version: 5.1.22)
2019-08-06 14:45:56 (29616): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-06 14:45:56 (29616): Create VM. (boinc_3d02ec901f9d88a0, slot#10)
2019-08-06 14:45:56 (29616): Updating drive controller type and model for desired configuration.
2019-08-06 14:45:56 (29616): Setting Memory Size for VM. (6392MB)
2019-08-06 14:45:56 (29616): Setting CPU Count for VM. (4)
2019-08-06 14:45:56 (29616): Setting Chipset Options for VM.
2019-08-06 14:45:56 (29616): Setting Boot Options for VM.
2019-08-06 14:45:57 (29616): Setting Network Configuration for NAT.
2019-08-06 14:45:57 (29616): Enabling VM Network Access.
2019-08-06 14:45:57 (29616): Disabling USB Support for VM.
2019-08-06 14:45:57 (29616): Disabling COM Port Support for VM.
2019-08-06 14:45:57 (29616): Disabling LPT Port Support for VM.
2019-08-06 14:45:57 (29616): Disabling Audio Support for VM.
2019-08-06 14:45:57 (29616): Disabling Clipboard Support for VM.
2019-08-06 14:45:58 (29616): Disabling Drag and Drop Support for VM.
2019-08-06 14:45:58 (29616): Adding storage controller(s) to VM.
2019-08-06 14:45:58 (29616): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-08-06 14:45:58 (29616): Adding VirtualBox Guest Additions to VM.
2019-08-06 14:45:58 (29616): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-08-06 14:45:58 (29616): Enabling shared directory for VM.
2019-08-06 14:45:59 (29616): Starting VM. (boinc_3d02ec901f9d88a0, slot#10)
2019-08-06 14:46:00 (29616): Successfully started VM. (PID = '30008')
2019-08-06 14:46:00 (29616): Reporting VM Process ID to BOINC.
2019-08-06 14:46:00 (29616): Guest Log: BIOS: VirtualBox 5.1.22
2019-08-06 14:46:01 (29616): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-06 14:46:01 (29616): Preference change detected
2019-08-06 14:46:01 (29616): Setting CPU throttle for VM. (100%)
2019-08-06 14:46:01 (29616): Setting checkpoint interval to 3000 seconds. (Higher value of (Preference: 3000 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-06 14:46:03 (29616): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-08-06 14:46:03 (29616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-08-06 14:46:03 (29616): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-08-06 14:46:03 (29616): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-08-06 14:46:03 (29616): Guest Log: BIOS: Booting from CD-ROM...
2019-08-06 14:46:07 (29616): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-08-06 14:46:07 (29616): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-08-06 14:46:21 (29616): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-08-06 14:46:21 (29616): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-08-06 14:46:21 (29616): Guest Log: net.ipv4.ip_forward = 1
2019-08-06 14:46:21 (29616): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-08-06 14:46:21 (29616): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-08-06 14:46:21 (29616): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-08-06 14:46:21 (29616): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-08-06 14:46:21 (29616): Guest Log: Segmentation fault
2019-08-06 14:46:21 (29616): Guest Log: automount ...
2019-08-06 14:46:22 (29616): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-08-06 14:46:22 (29616): Guest Log: automount over.
2019-08-06 14:46:22 (29616): Guest Log: Setting hostname to boot2docker Done.
2019-08-06 14:46:22 (29616): Guest Log: Tue Aug  6 14:46:11 UTC 2019 dhcp -------------------------------
2019-08-06 14:46:27 (29616): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1114)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00 (1351)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1352)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1353)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1354)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1355)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1356)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1357)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1358)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1359)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1360)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1361)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1362)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1363)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1364)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1365)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1366)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1367)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1368)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1369)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1370)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1371)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1372)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1373)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1374)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1375)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1376)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1377)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1378)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1379)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1380)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1381)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1382)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1383)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1384)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1385)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1386)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1387)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1388)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1389)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1390)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1391)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1392)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1393)
2019-08-06 14:46:27 (29616): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1394)
2019-08-06 14:46:28 (29616): Guest Log: Tue Aug  6 14:46:17 UTC 2019 dhcp -------------------------------
2019-08-06 14:46:28 (29616): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000302 main     Log opened 2019-08-06T14:46:17.347572000Z
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000612 main     OS Product: Linux
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000651 main     OS Release: 4.1.19-boot2docker
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000701 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000729 main     Executable: /sbin/VBoxService
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000730 main     Process ID: 833
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000731 main     Package type: LINUX_64BITS_GENERIC
2019-08-06 14:46:28 (29616): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.002108 main     5.0.16 r105871 started. Verbose level = 0
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000302 main     Log opened 2019-08-06T14:46:17.347572000Z
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000612 main     OS Product: Linux
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000651 main     OS Release: 4.1.19-boot2docker
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.008271 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.008414 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000701 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000729 main     Executable: /sbin/VBoxService
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000730 main     Process ID: 833
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.000731 main     Package type: LINUX_64BITS_GENERIC
2019-08-06 14:46:28 (29616): Guest Log: 00:00:00.002108 main     5.0.16 r105871 started. Verbose level = 0
2019-08-06 14:46:28 (29616): Guest Log: Mounting BOINC shared/...
2019-08-06 14:46:28 (29616): Guest Log: -------------------
2019-08-06 14:46:28 (29616): Guest Log: Tue Aug  6 19:46:20 UTC 2019
2019-08-06 14:46:32 (29616): Guest Log: 00:00:05.010707 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-08-06 14:46:32 (29616): Guest Log: Tue Aug  6 18:55:33 UTC 2019
2019-08-06 14:46:32 (29616): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-08-06 14:46:32 (29616): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-08-06 14:46:32 (29616): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-08-06 14:46:32 (29616): Guest Log:        valid_lft forever preferred_lft forever
2019-08-06 14:46:32 (29616): Guest Log:     inet6 ::1/128 scope host 
2019-08-06 14:46:32 (29616): Guest Log:        valid_lft forever preferred_lft forever
2019-08-06 14:46:32 (29616): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-08-06 14:46:32 (29616): Guest Log:     link/ether 66:59:f9:4e:84:34 brd ff:ff:ff:ff:ff:ff
2019-08-06 14:46:32 (29616): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-08-06 14:46:32 (29616): Guest Log:     link/ether 08:00:27:58:6b:91 brd ff:ff:ff:ff:ff:ff
2019-08-06 14:46:32 (29616): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-08-06 14:46:32 (29616): Guest Log:        valid_lft forever preferred_lft forever
2019-08-06 14:46:32 (29616): Guest Log:     inet6 fe80::a00:27ff:fe58:6b91/64 scope link 
2019-08-06 14:46:32 (29616): Guest Log:        valid_lft forever preferred_lft forever
2019-08-06 14:46:32 (29616): Guest Log: -------------------
2019-08-06 14:46:32 (29616): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-08-06 14:46:32 (29616): Guest Log: Waiting for Docker daemon to start...
2019-08-06 14:46:35 (29616): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-08-06 14:46:35 (29616): Guest Log: Running boinc_app...
2019-08-06 14:46:35 (29616): Guest Log: Importing Docker image from BOINC...
2019-08-06 14:46:38 (29616): Guest Log: 00:00:10.012218 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-08-06 14:48:06 (29616): Guest Log: Prerun diagnostics...
2019-08-06 14:48:06 (29616): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-08-06 14:48:06 (29616): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        13 months ago       1.473 GB
2019-08-06 14:48:06 (29616): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-08-06 14:48:06 (29616): Guest Log: 1.4G	/var/lib/docker
2019-08-06 14:48:06 (29616): Guest Log:               total        used        free      shared  buff/cache   available
2019-08-06 14:48:06 (29616): Guest Log: Mem:           6204          65        4447        1634        1692        4449
2019-08-06 14:48:06 (29616): Guest Log: Swap:          1499           0        1499
2019-08-06 14:48:06 (29616): Guest Log: Prerun commands...
2019-08-06 14:48:06 (29616): Guest Log: Running... 
2019-08-06 14:48:07 (29616): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-08-06 14:48:07 (29616): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-08-06 14:48:08 (29616): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-08-06 14:48:08 (29616): Guest Log:  48  762k   48  373k    0     0   671k      0  0:00:01 --:--:--  0:00:01  671k
2019-08-06 14:48:08 (29616): Guest Log: 100  762k  100  762k    0     0   794k      0 --:--:-- --:--:-- --:--:--  793k
2019-08-06 14:48:08 (29616): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-08-06 14:48:08 (29616): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-08-06 14:48:08 (29616): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-08-06 14:48:08 (29616): Guest Log: 100  1272  100  1272    0     0  11201      0 --:--:-- --:--:-- --:--:-- 11256
2019-08-06 14:48:10 (29616): Guest Log: Postrun commands...
2019-08-06 14:48:10 (29616): Guest Log: boinc_app exited (0)
2019-08-06 14:48:10 (29616): Guest Log: Saving results...
2019-08-06 14:48:10 (29616): Guest Log: lammps_test.txt
2019-08-06 14:48:10 (29616): VM Completion File Detected.
2019-08-06 14:48:10 (29616): Powering off VM.
2019-08-06 14:48:11 (29616): Successfully stopped VM.
2019-08-06 14:48:11 (29616): Deregistering VM. (boinc_3d02ec901f9d88a0, slot#10)
2019-08-06 14:48:11 (29616): Removing network bandwidth throttle group from VM.
2019-08-06 14:48:11 (29616): Removing storage controller(s) from VM.
2019-08-06 14:48:11 (29616): Removing VM from VirtualBox.
2019-08-06 14:48:11 (29616): Removing virtual ISO 9660 disk from VirtualBox.
14:48:16 (29616): called boinc_finish(0)

</stderr_txt>
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