Task 248903

Name boinc2docker_5618_1564955641.480186_2
Workunit 110772
Created 5 Aug 2019, 5:14:38 UTC
Sent 5 Aug 2019, 5:14:42 UTC
Report deadline 12 Aug 2019, 5:14:42 UTC
Received 5 Aug 2019, 5:17:59 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 418
Run time 1 min 16 sec
CPU time 54 sec
Validate state Valid
Credit 5.87
Device peak FLOPS 21.21 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 2,596.83 MB
Peak swap size 11,101.52 MB
Peak disk usage 340.71 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-08-04 22:16:31 (32447): vboxwrapper (7.7.26199): starting
2019-08-04 22:16:31 (32447): Feature: Checkpoint interval offset (152 seconds)
2019-08-04 22:16:31 (32447): Detected: VirtualBox VboxManage Interface (Version: 6.0.8)
2019-08-04 22:16:31 (32447): Detected: Sandbox Configuration Enabled
2019-08-04 22:16:32 (32447): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-04 22:16:32 (32447): Create VM. (boinc_61724a526268e2b6, slot#6)
2019-08-04 22:16:32 (32447): Updating drive controller type and model for desired configuration.
2019-08-04 22:16:32 (32447): Setting Memory Size for VM. (3534MB)
2019-08-04 22:16:32 (32447): Setting CPU Count for VM. (4)
2019-08-04 22:16:32 (32447): Setting Chipset Options for VM.
2019-08-04 22:16:32 (32447): Setting Boot Options for VM.
2019-08-04 22:16:32 (32447): Setting Network Configuration for NAT.
2019-08-04 22:16:32 (32447): Enabling VM Network Access.
2019-08-04 22:16:32 (32447): Disabling USB Support for VM.
2019-08-04 22:16:32 (32447): Disabling COM Port Support for VM.
2019-08-04 22:16:32 (32447): Disabling Audio Support for VM.
2019-08-04 22:16:32 (32447): Disabling Clipboard Support for VM.
2019-08-04 22:16:32 (32447): Disabling Drag and Drop Support for VM.
2019-08-04 22:16:33 (32447): Adding storage controller(s) to VM.
2019-08-04 22:16:33 (32447): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-08-04 22:16:33 (32447): Adding VirtualBox Guest Additions to VM.
2019-08-04 22:16:33 (32447): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-08-04 22:16:33 (32447): Enabling shared directory for VM.
2019-08-04 22:16:33 (32447): Starting VM. (boinc_61724a526268e2b6, slot#6)
2019-08-04 22:16:34 (32447): Successfully started VM. (PID = '32517')
2019-08-04 22:16:34 (32447): Reporting VM Process ID to BOINC.
2019-08-04 22:16:34 (32447): Guest Log: BIOS: VirtualBox 6.0.8
2019-08-04 22:16:34 (32447): Guest Log: CPUID EDX: 0x178bfbff
2019-08-04 22:16:35 (32447): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-04 22:16:35 (32447): Preference change detected
2019-08-04 22:16:35 (32447): Setting CPU throttle for VM. (100%)
2019-08-04 22:16:35 (32447): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-04 22:16:37 (32447): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-08-04 22:16:37 (32447): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-08-04 22:16:37 (32447): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-08-04 22:16:37 (32447): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-08-04 22:16:37 (32447): Guest Log: BIOS: Booting from CD-ROM...
2019-08-04 22:16:37 (32447): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-08-04 22:16:37 (32447): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-08-04 22:16:48 (32447): Guest Log: net.ipv4.ip_forward = 1
2019-08-04 22:16:48 (32447): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-08-04 22:16:48 (32447): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-08-04 22:16:48 (32447): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-08-04 22:16:48 (32447): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-08-04 22:16:48 (32447): Guest Log: Segmentation fault
2019-08-04 22:16:48 (32447): Guest Log: automount ...
2019-08-04 22:16:48 (32447): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-08-04 22:16:48 (32447): Guest Log: automount over.
2019-08-04 22:16:48 (32447): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-08-04 22:16:48 (32447): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-08-04 22:16:48 (32447): Guest Log: Setting hostname to boot2docker Done.
2019-08-04 22:16:48 (32447): Guest Log: Sun Aug  4 22:16:45 UTC 2019 dhcp -------------------------------
2019-08-04 22:16:54 (32447): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1105)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00 (1338)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1339)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1340)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1341)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1342)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1343)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1344)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1345)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1346)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1347)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1348)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1349)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1350)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1351)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1352)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1353)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1354)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1355)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event5 (1356)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1357)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1358)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1359)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1360)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1361)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1362)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1363)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1364)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1365)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1366)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1367)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1368)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1369)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1370)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1371)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1372)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1373)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1374)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1375)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1376)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1377)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1378)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1379)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1380)
2019-08-04 22:16:54 (32447): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1381)
2019-08-04 22:16:55 (32447): Guest Log: Sun Aug  4 22:16:51 UTC 2019 dhcp -------------------------------
2019-08-04 22:16:55 (32447): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.000173 main     Log opened 2019-08-04T22:16:51.759746000Z
2019-08-04 22:16:55 (32447): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.000173 main     Log opened 2019-08-04T22:16:51.759746000Z
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.004537 main     OS Product: Linux
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.004537 main     OS Product: Linux
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.005557 main     OS Release: 4.1.19-boot2docker
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.005557 main     OS Release: 4.1.19-boot2docker
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.007334 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.007334 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.009262 main     Executable: /sbin/VBoxService
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.009268 main     Process ID: 859
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.009269 main     Package type: LINUX_64BITS_GENERIC
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.009262 main     Executable: /sbin/VBoxService
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.009268 main     Process ID: 859
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.0092600:00:00.012424 main     5.0.16 r105871 started. Verbose level = 0
2019-08-04 22:16:55 (32447): Guest Log: in     Package type: LINUX_64BITS_GENERIC
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.012424 main     5.0.16 r105871 started. Verbose level = 0
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.017195 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-08-04 22:16:55 (32447): Guest Log: 00:00:00.017499 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-08-04 22:16:55 (32447): Guest Log: Mounting BOINC shared/...
2019-08-04 22:16:56 (32447): Guest Log: -------------------
2019-08-04 22:16:56 (32447): Guest Log: Mon Aug  5 05:16:55 UTC 2019
2019-08-04 22:17:00 (32447): Guest Log: 00:00:05.020523 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-08-04 22:17:01 (32447): Guest Log: Mon Aug  5 05:17:00 UTC 2019
2019-08-04 22:17:01 (32447): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-08-04 22:17:01 (32447): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-08-04 22:17:01 (32447): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-08-04 22:17:01 (32447): Guest Log:        valid_lft forever preferred_lft forever
2019-08-04 22:17:01 (32447): Guest Log:     inet6 ::1/128 scope host 
2019-08-04 22:17:01 (32447): Guest Log:        valid_lft forever preferred_lft forever
2019-08-04 22:17:01 (32447): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-08-04 22:17:01 (32447): Guest Log:     link/ether d2:b6:74:84:8a:11 brd ff:ff:ff:ff:ff:ff
2019-08-04 22:17:01 (32447): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-08-04 22:17:01 (32447): Guest Log:     link/ether 08:00:27:b3:0f:89 brd ff:ff:ff:ff:ff:ff
2019-08-04 22:17:01 (32447): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-08-04 22:17:01 (32447): Guest Log:        valid_lft forever preferred_lft forever
2019-08-04 22:17:01 (32447): Guest Log:     inet6 fe80::a00:27ff:feb3:f89/64 scope link 
2019-08-04 22:17:01 (32447): Guest Log:        valid_lft forever preferred_lft forever
2019-08-04 22:17:01 (32447): Guest Log: -------------------
2019-08-04 22:17:01 (32447): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-08-04 22:17:01 (32447): Guest Log: Waiting for Docker daemon to start...
2019-08-04 22:17:02 (32447): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-08-04 22:17:02 (32447): Guest Log: Running boinc_app...
2019-08-04 22:17:02 (32447): Guest Log: Importing Docker image from BOINC...
2019-08-04 22:17:05 (32447): Guest Log: 00:00:10.021559 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-08-04 22:17:36 (32447): Guest Log: Prerun diagnostics...
2019-08-04 22:17:36 (32447): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-08-04 22:17:36 (32447): Guest Log: carlosred/bowtie    built               4beacb78841d        13 months ago       758.7 MB
2019-08-04 22:17:36 (32447): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-08-04 22:17:36 (32447): Guest Log: 753.8M	/var/lib/docker
2019-08-04 22:17:36 (32447): Guest Log:               total        used        free      shared  buff/cache   available
2019-08-04 22:17:36 (32447): Guest Log: Mem:           3461          54        2447         917         959        2447
2019-08-04 22:17:36 (32447): Guest Log: Swap:           815           0         815
2019-08-04 22:17:36 (32447): Guest Log: Prerun commands...
2019-08-04 22:17:36 (32447): Guest Log: Running... 
2019-08-04 22:17:37 (32447): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-08-04 22:17:37 (32447): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-08-04 22:17:39 (32447): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-08-04 22:17:39 (32447): Guest Log:   0 14.4M    0 55337    0     0   130k      0  0:01:53 --:--:--  0:01:53  129k
2019-08-04 22:17:39 (32447): Guest Log:  34 14.4M   34 5058k    0     0  3669k      0  0:00:04  0:00:01  0:00:03 3668k
2019-08-04 22:17:39 (32447): Guest Log: 100 14.4M  100 14.4M    0     0  6243k      0  0:00:02  0:00:02 --:--:-- 6244k
2019-08-04 22:17:39 (32447): Guest Log: Archive:  s_cerevisiae.ebwt.zip
2019-08-04 22:17:39 (32447): Guest Log:   inflating: s_cerevisiae.1.ebwt     
2019-08-04 22:17:39 (32447): Guest Log:   inflating: s_cerevisiae.2.ebwt     
2019-08-04 22:17:39 (32447): Guest Log:   inflating: s_cerevisiae.3.ebwt     
2019-08-04 22:17:39 (32447): Guest Log:   inflating: s_cerevisiae.4.ebwt     
2019-08-04 22:17:39 (32447): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  
2019-08-04 22:17:39 (32447): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  
2019-08-04 22:17:39 (32447): Guest Log:   inflating: make_s_cerevisiae.sh    
2019-08-04 22:17:39 (32447): Guest Log: # reads processed: 1
2019-08-04 22:17:39 (32447): Guest Log: # reads with at least one reported alignment: 1 (100.00%)
2019-08-04 22:17:39 (32447): Guest Log: # reads that failed to align: 0 (0.00%)
2019-08-04 22:17:39 (32447): Guest Log: Reported 1 alignments
2019-08-04 22:17:40 (32447): Guest Log: Postrun commands...
2019-08-04 22:17:40 (32447): Guest Log: boinc_app exited (0)
2019-08-04 22:17:40 (32447): Guest Log: Saving results...
2019-08-04 22:17:40 (32447): Guest Log: make_s_cerevisiae.sh
2019-08-04 22:17:40 (32447): Guest Log: res_bowtie.txt
2019-08-04 22:17:40 (32447): VM Completion File Detected.
2019-08-04 22:17:40 (32447): Powering off VM.
2019-08-04 22:17:41 (32447): Successfully stopped VM.
2019-08-04 22:17:41 (32447): Deregistering VM. (boinc_61724a526268e2b6, slot#6)
2019-08-04 22:17:41 (32447): Removing network bandwidth throttle group from VM.
2019-08-04 22:17:41 (32447): Removing storage controller(s) from VM.
2019-08-04 22:17:41 (32447): Removing VM from VirtualBox.
2019-08-04 22:17:41 (32447): Removing virtual ISO 9660 disk from VirtualBox.
22:17:46 (32447): called boinc_finish(0)

</stderr_txt>
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