Task 248880

Name boinc2docker_19727_1564955774.257109_1
Workunit 111170
Created 4 Aug 2019, 21:56:15 UTC
Sent 4 Aug 2019, 22:19:43 UTC
Report deadline 11 Aug 2019, 22:19:43 UTC
Received 5 Aug 2019, 4:37:57 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1540
Run time 5 min 29 sec
CPU time 6 min 42 sec
Validate state Valid
Credit 5.47
Device peak FLOPS 12.87 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 93.91 MB
Peak swap size 106.33 MB
Peak disk usage 340.77 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-08-04 21:30:46 (14644): vboxwrapper (7.9.26200): starting
2019-08-04 21:30:46 (14644): Feature: Checkpoint interval offset (276 seconds)
2019-08-04 21:30:46 (14644): Detected: VirtualBox COM Interface (Version: 5.2.30)
2019-08-04 21:30:46 (14644): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-04 21:30:46 (14644): Create VM. (boinc_57d01df3f5d5126a, slot#14)
2019-08-04 21:30:46 (14644): Updating drive controller type and model for desired configuration.
2019-08-04 21:30:46 (14644): Setting Memory Size for VM. (3534MB)
2019-08-04 21:30:46 (14644): Setting CPU Count for VM. (4)
2019-08-04 21:30:46 (14644): Setting Chipset Options for VM.
2019-08-04 21:30:46 (14644): Setting Boot Options for VM.
2019-08-04 21:30:46 (14644): Enabling VM Network Access.
2019-08-04 21:30:46 (14644): Setting Network Configuration for NAT.
2019-08-04 21:30:46 (14644): Disabling USB Support for VM.
2019-08-04 21:30:46 (14644): Disabling COM Port Support for VM.
2019-08-04 21:30:46 (14644): Disabling LPT Port Support for VM.
2019-08-04 21:30:46 (14644): Disabling Audio Support for VM.
2019-08-04 21:30:46 (14644): Disabling Clipboard Support for VM.
2019-08-04 21:30:46 (14644): Disabling Drag and Drop Support for VM.
2019-08-04 21:30:46 (14644): Adding storage controller(s) to VM.
2019-08-04 21:30:46 (14644): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-08-04 21:30:46 (14644): Adding VirtualBox Guest Additions to VM.
2019-08-04 21:30:46 (14644): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-08-04 21:30:46 (14644): Enabling shared directory for VM.
2019-08-04 21:30:46 (14644): Starting VM. (boinc_57d01df3f5d5126a, slot#14)
2019-08-04 21:30:54 (14644): Guest Log: BIOS: VirtualBox 5.2.30

2019-08-04 21:30:54 (14644): Guest Log: CPUID EDX: 0x178bfbff

2019-08-04 21:30:54 (14644): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-08-04 21:30:54 (14644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-08-04 21:30:54 (14644): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-08-04 21:30:54 (14644): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-08-04 21:30:54 (14644): Guest Log: BIOS: Booting from CD-ROM...

2019-08-04 21:30:54 (14644): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-08-04 21:30:54 (14644): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-08-04 21:30:54 (14644): Successfully started VM. (PID = '12700')
2019-08-04 21:30:54 (14644): Reporting VM Process ID to BOINC.
2019-08-04 21:30:59 (14644): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-04 21:31:43 (14644): Preference change detected
2019-08-04 21:31:43 (14644): Setting CPU throttle for VM. (100%)
2019-08-04 21:31:44 (14644): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-04 21:32:54 (14644): Guest Log: net.ipv4.ip_forward = 1

2019-08-04 21:32:54 (14644): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-08-04 21:32:54 (14644): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 21:32:54 (14644): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-08-04 21:32:54 (14644): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 21:32:54 (14644): Guest Log: Segmentation fault

2019-08-04 21:32:54 (14644): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-08-04 21:32:54 (14644): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-08-04 21:32:54 (14644): Guest Log: automount ...

2019-08-04 21:33:22 (14644): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-08-04 21:33:22 (14644): Guest Log: automount over.

2019-08-04 21:33:22 (14644): Guest Log: Setting hostname to boot2docker Done.

2019-08-04 21:33:23 (14644): Guest Log: Sun Aug  4 21:32:22 UTC 2019 dhcp -------------------------------

2019-08-04 21:33:29 (14644): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-08-04 21:33:29 (14644): Guest Log: Sun Aug  4 21:32:53 UTC 2019 dhcp -------------------------------

2019-08-04 21:33:29 (14644): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000137 main     Log opened 2019-08-04T21:32:53.733945000Z

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000274 main     OS Product: Linux

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000350 main     OS Release: 4.1.19-boot2docker

2019-08-04 21:33:29 (14644): Guest Log: V00:00:00.000400 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 21:33:29 (14644): Guest Log: oxS00:00:00.000472 main     Executable: /sbin/VBoxService

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000475 main     Process ID: 924

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000476 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 21:33:29 (14644): Guest Log: vice 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) relea00:00:00.002435 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 21:33:29 (14644): Guest Log: e log

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000137 main     Log opened 200:00:00.009871 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-08-04 21:33:29 (14644): Guest Log: 19-00:00:00.009956 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-08-04 21:33:29 (14644): Guest Log: 08-04T21:32:53.733945000Z

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000274 main     OS Product: Linux

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000350 main     OS Release: 4.1.19-boot2docker

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000400 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000472 main     Executable: /sbin/VBoxService

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000475 main     Process ID: 924

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.000476 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 21:33:29 (14644): Guest Log: 00:00:00.002435 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 21:33:29 (14644): Guest Log: Mounting BOINC shared/...

2019-08-04 21:33:29 (14644): Guest Log: -------------------

2019-08-04 21:33:29 (14644): Guest Log: Mon Aug  5 04:32:34 UTC 2019

2019-08-04 21:33:34 (14644): Guest Log: 00:00:05.014488 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-08-04 21:33:34 (14644): Guest Log: Mon Aug  5 04:33:31 UTC 2019

2019-08-04 21:33:34 (14644): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-08-04 21:33:34 (14644): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-08-04 21:33:34 (14644): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-08-04 21:33:34 (14644): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 21:33:34 (14644): Guest Log:     inet6 ::1/128 scope host 

2019-08-04 21:33:34 (14644): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 21:33:34 (14644): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-08-04 21:33:34 (14644): Guest Log:     link/ether b6:e5:66:35:44:b0 brd ff:ff:ff:ff:ff:ff

2019-08-04 21:33:34 (14644): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-08-04 21:33:34 (14644): Guest Log:     link/ether 08:00:27:a3:c5:dd brd ff:ff:ff:ff:ff:ff

2019-08-04 21:33:34 (14644): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-08-04 21:33:34 (14644): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 21:33:34 (14644): Guest Log:     inet6 fe80::a00:27ff:fea3:c5dd/64 scope link 

2019-08-04 21:33:34 (14644): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 21:33:34 (14644): Guest Log: -------------------

2019-08-04 21:33:34 (14644): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-08-04 21:33:34 (14644): Guest Log: Waiting for Docker daemon to start...

2019-08-04 21:33:34 (14644): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 21:33:34 (14644): Guest Log: Running boinc_app...

2019-08-04 21:33:34 (14644): Guest Log: Importing Docker image from BOINC...

2019-08-04 21:33:40 (14644): Guest Log: 00:00:10.026945 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-08-04 21:36:52 (14644): Guest Log: Prerun diagnostics...

2019-08-04 21:36:52 (14644): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 21:36:52 (14644): Guest Log: carlosred/bowtie    built               4beacb78841d        13 months ago       758.7 MB

2019-08-04 21:36:52 (14644): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-08-04 21:36:52 (14644): Guest Log: 753.8M	/var/lib/docker

2019-08-04 21:36:52 (14644): Guest Log:               total        used        free      shared  buff/cache   available

2019-08-04 21:36:52 (14644): Guest Log: Mem:           3461          61        2440         917         959        2440

2019-08-04 21:36:52 (14644): Guest Log: Swap:           815           0         815

2019-08-04 21:36:52 (14644): Guest Log: Prerun commands...

2019-08-04 21:36:52 (14644): Guest Log: Running... 

2019-08-04 21:36:52 (14644): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 21:36:52 (14644): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 21:37:27 (14644): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 21:37:27 (14644): Guest Log:   0 14.4M    0 48037    0     0    98k      0  0:02:29 --:--:--  0:02:29   98k

2019-08-04 21:37:27 (14644): Guest Log:   2 14.4M    2  426k    0     0   297k      0  0:00:49  0:00:01  0:00:48  297k

2019-08-04 21:37:27 (14644): Guest Log:   6 14.4M    6  953k    0     0   393k      0  0:00:37  0:00:02  0:00:35  393k

2019-08-04 21:37:27 (14644): Guest Log:   8 14.4M    8 1317k    0     0   383k      0  0:00:38  0:00:03  0:00:35  383k

2019-08-04 21:37:27 (14644): Guest Log:  10 14.4M   10 1573k    0     0   355k      0  0:00:41  0:00:04  0:00:37  355k

2019-08-04 21:37:27 (14644): Guest Log:  13 14.4M   13 1956k    0     0   356k      0  0:00:41  0:00:05  0:00:36  380k

2019-08-04 21:37:27 (14644): Guest Log:  14 14.4M   14 2181k    0     0   339k      0  0:00:43  0:00:06  0:00:37  351k

2019-08-04 21:37:27 (14644): Guest Log:  16 14.4M   16 2469k    0     0   330k      0  0:00:44  0:00:07  0:00:37  300k

2019-08-04 21:37:27 (14644): Guest Log:  18 14.4M   18 2662k    0     0   310k      0  0:00:47  0:00:08  0:00:39  261k

2019-08-04 21:37:27 (14644): Guest Log:  19 14.4M   19 2867k    0     0   304k      0  0:00:48  0:00:09  0:00:39  259k

2019-08-04 21:37:27 (14644): Guest Log:  20 14.4M   20 3049k    0     0   291k      0  0:00:50  0:00:10  0:00:40  219k

2019-08-04 21:37:27 (14644): Guest Log:  22 14.4M   22 3309k    0     0   288k      0  0:00:51  0:00:11  0:00:40  223k

2019-08-04 21:37:27 (14644): Guest Log:  25 14.4M   25 3726k    0     0   299k      0  0:00:49  0:00:12  0:00:37  253k

2019-08-04 21:37:27 (14644): Guest Log:  28 14.4M   28 4148k    0     0   308k      0  0:00:47  0:00:13  0:00:34  305k

2019-08-04 21:37:27 (14644): Guest Log:  30 14.4M   30 4495k    0     0   311k      0  0:00:47  0:00:14  0:00:33  325k

2019-08-04 21:37:27 (14644): Guest Log:  34 14.4M   34 5032k    0     0   326k      0  0:00:45  0:00:15  0:00:30  400k

2019-08-04 21:37:27 (14644): Guest Log:  37 14.4M   37 5499k    0     0   333k      0  0:00:44  0:00:16  0:00:28  435k

2019-08-04 21:37:27 (14644): Guest Log:  41 14.4M   41 6086k    0     0   348k      0  0:00:42  0:00:17  0:00:25  470k

2019-08-04 21:37:27 (14644): Guest Log:  45 14.4M   45 6675k    0     0   361k      0  0:00:40  0:00:18  0:00:22  500k

2019-08-04 21:37:27 (14644): Guest Log:  49 14.4M   49 7319k    0     0   376k      0  0:00:39  0:00:19  0:00:20  564k

2019-08-04 21:37:27 (14644): Guest Log:  54 14.4M   54 8051k    0     0   394k      0  0:00:37  0:00:20  0:00:17  603k

2019-08-04 21:37:27 (14644): Guest Log:  59 14.4M   59 8846k    0     0   412k      0  0:00:35  0:00:21  0:00:14  677k

2019-08-04 21:37:27 (14644): Guest Log:  62 14.4M   62 9237k    0     0   411k      0  0:00:35  0:00:22  0:00:13  632k

2019-08-04 21:37:27 (14644): Guest Log:  67 14.4M   67 9943k    0     0   423k      0  0:00:34  0:00:23  0:00:11  653k

2019-08-04 21:37:27 (14644): Guest Log:  73 14.4M   73 10.5M    0     0   443k      0  0:00:33  0:00:24  0:00:09  698k

2019-08-04 21:37:27 (14644): Guest Log:  78 14.4M   78 11.2M    0     0   453k      0  0:00:32  0:00:25  0:00:07  690k

2019-08-04 21:37:27 (14644): Guest Log:  81 14.4M   81 11.6M    0     0   453k      0  0:00:32  0:00:26  0:00:06  626k

2019-08-04 21:37:27 (14644): Guest Log:  83 14.4M   83 12.0M    0     0   451k      0  0:00:32  0:00:27  0:00:05  629k

2019-08-04 21:37:27 (14644): Guest Log:  86 14.4M   86 12.4M    0     0   448k      0  0:00:32  0:00:28  0:00:04  565k

2019-08-04 21:37:27 (14644): Guest Log:  87 14.4M   87 12.6M    0     0   440k      0  0:00:33  0:00:29  0:00:04  430k

2019-08-04 21:37:27 (14644): Guest Log:  88 14.4M   88 12.7M    0     0   427k      0  0:00:34  0:00:30  0:00:04  294k

2019-08-04 21:37:27 (14644): Guest Log:  89 14.4M   89 12.8M    0     0   419k      0  0:00:35  0:00:31  0:00:04  243k

2019-08-04 21:37:27 (14644): Guest Log:  90 14.4M   90 13.0M    0     0   411k      0  0:00:35  0:00:32  0:00:03  191k

2019-08-04 21:37:27 (14644): Guest Log:  92 14.4M   92 13.3M    0     0   409k      0  0:00:36  0:00:33  0:00:03  192k

2019-08-04 21:37:27 (14644): Guest Log:  94 14.4M   94 13.6M    0     0   405k      0  0:00:36  0:00:34  0:00:02  201k

2019-08-04 21:37:27 (14644): Guest Log:  96 14.4M   96 13.9M    0     0   402k      0  0:00:36  0:00:35  0:00:01  251k

2019-08-04 21:37:27 (14644): Guest Log:  99 14.4M   99 14.3M    0     0   403k      0  0:00:36  0:00:36 --:--:--  299k

2019-08-04 21:37:27 (14644): Guest Log: 100 14.4M  100 14.4M    0     0   402k      0  0:00:36  0:00:36 --:--:--  335k

2019-08-04 21:37:27 (14644): Guest Log: Archive:  s_cerevisiae.ebwt.zip

2019-08-04 21:37:27 (14644): Guest Log:   inflating: s_cerevisiae.1.ebwt     

2019-08-04 21:37:27 (14644): Guest Log:   inflating: s_cerevisiae.2.ebwt     

2019-08-04 21:37:27 (14644): Guest Log:   inflating: s_cerevisiae.3.ebwt     

2019-08-04 21:37:27 (14644): Guest Log:   inflating: s_cerevisiae.4.ebwt     

2019-08-04 21:37:27 (14644): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  

2019-08-04 21:37:27 (14644): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  

2019-08-04 21:37:27 (14644): Guest Log:   inflating: make_s_cerevisiae.sh    

2019-08-04 21:37:32 (14644): Guest Log: # reads processed: 1

2019-08-04 21:37:32 (14644): Guest Log: # reads with at least one reported alignment: 1 (100.00%)

2019-08-04 21:37:32 (14644): Guest Log: # reads that failed to align: 0 (0.00%)

2019-08-04 21:37:32 (14644): Guest Log: Reported 1 alignments

2019-08-04 21:37:32 (14644): Guest Log: Postrun commands...

2019-08-04 21:37:32 (14644): Guest Log: boinc_app exited (0)

2019-08-04 21:37:32 (14644): Guest Log: Saving results...

2019-08-04 21:37:32 (14644): Guest Log: make_s_cerevisiae.sh

2019-08-04 21:37:32 (14644): Guest Log: res_bowtie.txt

2019-08-04 21:37:32 (14644): VM Completion File Detected.
2019-08-04 21:37:32 (14644): Powering off VM.
2019-08-04 21:37:33 (14644): Successfully stopped VM.
2019-08-04 21:37:38 (14644): Deregistering VM. (boinc_57d01df3f5d5126a, slot#14)
2019-08-04 21:37:38 (14644): Removing virtual disk drive(s) from VM.
2019-08-04 21:37:38 (14644): Removing network bandwidth throttle group from VM.
2019-08-04 21:37:38 (14644): Removing storage controller(s) from VM.
2019-08-04 21:37:38 (14644): Removing VM from VirtualBox.
21:37:43 (14644): called boinc_finish(0)

</stderr_txt>
]]>