Task 248874

Name boinc2docker_19622_1564955773.303171_1
Workunit 111167
Created 4 Aug 2019, 21:56:15 UTC
Sent 4 Aug 2019, 22:19:43 UTC
Report deadline 11 Aug 2019, 22:19:43 UTC
Received 5 Aug 2019, 4:38:35 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1540
Run time 5 min 12 sec
CPU time 6 min 26 sec
Validate state Valid
Credit 6.41
Device peak FLOPS 12.87 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 93.60 MB
Peak swap size 106.80 MB
Peak disk usage 340.77 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-08-04 21:32:33 (7836): vboxwrapper (7.9.26200): starting
2019-08-04 21:32:33 (7836): Feature: Checkpoint interval offset (469 seconds)
2019-08-04 21:32:33 (7836): Detected: VirtualBox COM Interface (Version: 5.2.30)
2019-08-04 21:32:33 (7836): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-04 21:32:33 (7836): Create VM. (boinc_66e6b682ee17ac80, slot#2)
2019-08-04 21:32:33 (7836): Updating drive controller type and model for desired configuration.
2019-08-04 21:32:33 (7836): Setting Memory Size for VM. (3534MB)
2019-08-04 21:32:33 (7836): Setting CPU Count for VM. (4)
2019-08-04 21:32:33 (7836): Setting Chipset Options for VM.
2019-08-04 21:32:33 (7836): Setting Boot Options for VM.
2019-08-04 21:32:33 (7836): Enabling VM Network Access.
2019-08-04 21:32:33 (7836): Setting Network Configuration for NAT.
2019-08-04 21:32:33 (7836): Disabling USB Support for VM.
2019-08-04 21:32:33 (7836): Disabling COM Port Support for VM.
2019-08-04 21:32:33 (7836): Disabling LPT Port Support for VM.
2019-08-04 21:32:33 (7836): Disabling Audio Support for VM.
2019-08-04 21:32:33 (7836): Disabling Clipboard Support for VM.
2019-08-04 21:32:33 (7836): Disabling Drag and Drop Support for VM.
2019-08-04 21:32:33 (7836): Adding storage controller(s) to VM.
2019-08-04 21:32:33 (7836): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-08-04 21:32:33 (7836): Adding VirtualBox Guest Additions to VM.
2019-08-04 21:32:33 (7836): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-08-04 21:32:33 (7836): Enabling shared directory for VM.
2019-08-04 21:32:33 (7836): Starting VM. (boinc_66e6b682ee17ac80, slot#2)
2019-08-04 21:32:50 (7836): Guest Log: BIOS: VirtualBox 5.2.30

2019-08-04 21:32:50 (7836): Guest Log: CPUID EDX: 0x178bfbff

2019-08-04 21:32:50 (7836): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-08-04 21:32:50 (7836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-08-04 21:32:50 (7836): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-08-04 21:32:50 (7836): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-08-04 21:32:50 (7836): Guest Log: BIOS: Booting from CD-ROM...

2019-08-04 21:32:50 (7836): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-08-04 21:32:50 (7836): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-08-04 21:32:50 (7836): Successfully started VM. (PID = '14240')
2019-08-04 21:32:50 (7836): Reporting VM Process ID to BOINC.
2019-08-04 21:32:56 (7836): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-04 21:33:29 (7836): Preference change detected
2019-08-04 21:33:29 (7836): Setting CPU throttle for VM. (100%)
2019-08-04 21:33:29 (7836): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-04 21:34:45 (7836): Guest Log: net.ipv4.ip_forward = 1

2019-08-04 21:34:45 (7836): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-08-04 21:34:45 (7836): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 21:34:45 (7836): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-08-04 21:34:45 (7836): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 21:34:45 (7836): Guest Log: Segmentation fault

2019-08-04 21:34:45 (7836): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-08-04 21:34:45 (7836): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-08-04 21:34:45 (7836): Guest Log: automount ...

2019-08-04 21:34:51 (7836): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-08-04 21:34:51 (7836): Guest Log: automount over.

2019-08-04 21:34:51 (7836): Guest Log: Setting hostname to boot2docker Done.

2019-08-04 21:34:51 (7836): Guest Log: Sun Aug  4 21:34:11 UTC 2019 dhcp -------------------------------

2019-08-04 21:34:56 (7836): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-08-04 21:34:56 (7836): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1384)

2019-08-04 21:34:56 (7836): Guest Log: Sun Aug  4 21:34:17 UTC 2019 dhcp -------------------------------

2019-08-04 21:34:56 (7836): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.002311 main     Log opened 2019-08-04T21:34:18.399141000Z

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.009038 main     OS Product: Linux

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.010887 main     OS Release: 4.1.19-boot2docker

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.011363 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.013986 main     Executable: /sbin/VBoxService

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.013988 main     Process ID: 874

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.013990 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 21:34:56 (7836): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.024302 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.002311 main     Log opened 2019-08-04T21:34:18.399141000Z

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.045696 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.045765 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.009038 main     OS Product: Linux

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.010887 main     OS Release: 4.1.19-boot2docker

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.011363 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.013986 main     Executable: /sbin/VBoxService

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.013988 main     Process ID: 874

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.013990 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 21:34:56 (7836): Guest Log: 00:00:00.024302 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 21:34:56 (7836): Guest Log: Mounting BOINC shared/...

2019-08-04 21:34:56 (7836): Guest Log: -------------------

2019-08-04 21:34:56 (7836): Guest Log: Mon Aug  5 04:34:20 UTC 2019

2019-08-04 21:35:01 (7836): Guest Log: 00:00:05.061666 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-08-04 21:35:01 (7836): Guest Log: Mon Aug  5 04:34:58 UTC 2019

2019-08-04 21:35:01 (7836): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-08-04 21:35:01 (7836): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-08-04 21:35:01 (7836): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-08-04 21:35:01 (7836): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 21:35:01 (7836): Guest Log:     inet6 ::1/128 scope host 

2019-08-04 21:35:01 (7836): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 21:35:01 (7836): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-08-04 21:35:01 (7836): Guest Log:     link/ether 9e:90:35:0c:dc:82 brd ff:ff:ff:ff:ff:ff

2019-08-04 21:35:01 (7836): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-08-04 21:35:01 (7836): Guest Log:     link/ether 08:00:27:a1:65:4d brd ff:ff:ff:ff:ff:ff

2019-08-04 21:35:01 (7836): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-08-04 21:35:01 (7836): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 21:35:01 (7836): Guest Log:     inet6 fe80::a00:27ff:fea1:654d/64 scope link 

2019-08-04 21:35:01 (7836): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 21:35:01 (7836): Guest Log: -------------------

2019-08-04 21:35:01 (7836): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-08-04 21:35:01 (7836): Guest Log: Waiting for Docker daemon to start...

2019-08-04 21:35:10 (7836): Guest Log: 00:00:10.697461 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-08-04 21:35:15 (7836): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 21:35:15 (7836): Guest Log: Running boinc_app...

2019-08-04 21:35:15 (7836): Guest Log: Importing Docker image from BOINC...

2019-08-04 21:37:18 (7836): Guest Log: Prerun diagnostics...

2019-08-04 21:37:18 (7836): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 21:37:18 (7836): Guest Log: carlosred/bowtie    built               4beacb78841d        13 months ago       758.7 MB

2019-08-04 21:37:18 (7836): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-08-04 21:37:18 (7836): Guest Log: 753.8M	/var/lib/docker

2019-08-04 21:37:18 (7836): Guest Log:               total        used        free      shared  buff/cache   available

2019-08-04 21:37:18 (7836): Guest Log: Mem:           3461          58        2443         917         959        2443

2019-08-04 21:37:18 (7836): Guest Log: Swap:           815           0         815

2019-08-04 21:37:18 (7836): Guest Log: Prerun commands...

2019-08-04 21:37:18 (7836): Guest Log: Running... 

2019-08-04 21:37:18 (7836): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 21:37:18 (7836): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 21:38:03 (7836): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 21:38:03 (7836): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 21:38:03 (7836): Guest Log:   1 14.4M    1  176k    0     0   139k      0  0:01:46  0:00:01  0:01:45  138k

2019-08-04 21:38:03 (7836): Guest Log:   2 14.4M    2  431k    0     0   176k      0  0:01:23  0:00:02  0:01:21  176k

2019-08-04 21:38:03 (7836): Guest Log:   3 14.4M    3  565k    0     0   165k      0  0:01:29  0:00:03  0:01:26  165k

2019-08-04 21:38:03 (7836): Guest Log:   5 14.4M    5  796k    0     0   182k      0  0:01:21  0:00:04  0:01:17  182k

2019-08-04 21:38:03 (7836): Guest Log:   6 14.4M    6  923k    0     0   167k      0  0:01:28  0:00:05  0:01:23  178k

2019-08-04 21:38:03 (7836): Guest Log:   6 14.4M    6  966k    0     0   147k      0  0:01:40  0:00:06  0:01:34  149k

2019-08-04 21:38:03 (7836): Guest Log:   7 14.4M    7 1094k    0     0   142k      0  0:01:43  0:00:07  0:01:36  126k

2019-08-04 21:38:03 (7836): Guest Log:   8 14.4M    8 1198k    0     0   144k      0  0:01:41  0:00:08  0:01:33  130k

2019-08-04 21:38:03 (7836): Guest Log:   9 14.4M    9 1447k    0     0   154k      0  0:01:35  0:00:09  0:01:26  129k

2019-08-04 21:38:03 (7836): Guest Log:  11 14.4M   11 1655k    0     0   160k      0  0:01:32  0:00:10  0:01:22  152k

2019-08-04 21:38:03 (7836): Guest Log:  12 14.4M   12 1885k    0     0   167k      0  0:01:28  0:00:11  0:01:17  194k

2019-08-04 21:38:03 (7836): Guest Log:  15 14.4M   15 2315k    0     0   188k      0  0:01:18  0:00:12  0:01:06  264k

2019-08-04 21:38:03 (7836): Guest Log:  18 14.4M   18 2676k    0     0   199k      0  0:01:14  0:00:13  0:01:01  285k

2019-08-04 21:38:03 (7836): Guest Log:  23 14.4M   23 3514k    0     0   246k      0  0:01:00  0:00:14  0:00:46  423k

2019-08-04 21:38:03 (7836): Guest Log:  27 14.4M   27 4094k    0     0   268k      0  0:00:55  0:00:15  0:00:40  491k

2019-08-04 21:38:03 (7836): Guest Log:  30 14.4M   30 4512k    0     0   276k      0  0:00:53  0:00:16  0:00:37  521k

2019-08-04 21:38:03 (7836): Guest Log:  33 14.4M   33 4886k    0     0   282k      0  0:00:52  0:00:17  0:00:35  514k

2019-08-04 21:38:03 (7836): Guest Log:  35 14.4M   35 5299k    0     0   290k      0  0:00:50  0:00:18  0:00:32  543k

2019-08-04 21:38:03 (7836): Guest Log:  38 14.4M   38 5761k    0     0   298k      0  0:00:49  0:00:19  0:00:30  449k

2019-08-04 21:38:03 (7836): Guest Log:  42 14.4M   42 6264k    0     0   309k      0  0:00:47  0:00:20  0:00:27  434k

2019-08-04 21:38:03 (7836): Guest Log:  45 14.4M   45 6708k    0     0   315k      0  0:00:46  0:00:21  0:00:25  441k

2019-08-04 21:38:03 (7836): Guest Log:  46 14.4M   46 6926k    0     0   310k      0  0:00:47  0:00:22  0:00:25  405k

2019-08-04 21:38:03 (7836): Guest Log:  48 14.4M   48 7162k    0     0   307k      0  0:00:48  0:00:23  0:00:25  372k

2019-08-04 21:38:03 (7836): Guest Log:  51 14.4M   51 7594k    0     0   312k      0  0:00:47  0:00:24  0:00:23  366k

2019-08-04 21:38:03 (7836): Guest Log:  54 14.4M   54 7992k    0     0   316k      0  0:00:46  0:00:25  0:00:21  345k

2019-08-04 21:38:03 (7836): Guest Log:  56 14.4M   56 8399k    0     0   319k      0  0:00:46  0:00:26  0:00:20  338k

2019-08-04 21:38:03 (7836): Guest Log:  58 14.4M   58 8695k    0     0   318k      0  0:00:46  0:00:27  0:00:19  354k

2019-08-04 21:38:03 (7836): Guest Log:  61 14.4M   61 9042k    0     0   319k      0  0:00:46  0:00:28  0:00:18  376k

2019-08-04 21:38:03 (7836): Guest Log:  64 14.4M   64 9526k    0     0   325k      0  0:00:45  0:00:29  0:00:16  385k

2019-08-04 21:38:03 (7836): Guest Log:  67 14.4M   67 9986k    0     0   329k      0  0:00:44  0:00:30  0:00:14  395k

2019-08-04 21:38:03 (7836): Guest Log:  69 14.4M   69  9.9M    0     0   323k      0  0:00:45  0:00:31  0:00:14  340k

2019-08-04 21:38:03 (7836): Guest Log:  71 14.4M   71 10.3M    0     0   327k      0  0:00:45  0:00:32  0:00:13  380k

2019-08-04 21:38:03 (7836): Guest Log:  73 14.4M   73 10.6M    0     0   326k      0  0:00:45  0:00:33  0:00:12  365k

2019-08-04 21:38:03 (7836): Guest Log:  75 14.4M   75 10.9M    0     0   324k      0  0:00:45  0:00:34  0:00:11  319k

2019-08-04 21:38:03 (7836): Guest Log:  77 14.4M   77 11.1M    0     0   324k      0  0:00:45  0:00:35  0:00:10  295k

2019-08-04 21:38:03 (7836): Guest Log:  79 14.4M   79 11.4M    0     0   322k      0  0:00:45  0:00:36  0:00:09  320k

2019-08-04 21:38:03 (7836): Guest Log:  81 14.4M   81 11.7M    0     0   321k      0  0:00:45  0:00:37  0:00:08  283k

2019-08-04 21:38:03 (7836): Guest Log:  82 14.4M   82 11.9M    0     0   317k      0  0:00:46  0:00:38  0:00:08  259k

2019-08-04 21:38:03 (7836): Guest Log:  85 14.4M   85 12.3M    0     0   320k      0  0:00:46  0:00:39  0:00:07  294k

2019-08-04 21:38:03 (7836): Guest Log:  87 14.4M   87 12.6M    0     0   322k      0  0:00:45  0:00:40  0:00:05  309k

2019-08-04 21:38:03 (7836): Guest Log:  90 14.4M   90 13.1M    0     0   325k      0  0:00:45  0:00:41  0:00:04  343k

2019-08-04 21:38:03 (7836): Guest Log:  93 14.4M   93 13.5M    0     0   327k      0  0:00:45  0:00:42  0:00:03  368k

2019-08-04 21:38:03 (7836): Guest Log:  97 14.4M   97 14.0M    0     0   332k      0  0:00:44  0:00:43  0:00:01  450k

2019-08-04 21:38:03 (7836): Guest Log: 100 14.4M  100 14.4M    0     0   334k      0  0:00:44  0:00:44 --:--:--  444k

2019-08-04 21:38:03 (7836): Guest Log: Archive:  s_cerevisiae.ebwt.zip

2019-08-04 21:38:03 (7836): Guest Log:   inflating: s_cerevisiae.1.ebwt     

2019-08-04 21:38:03 (7836): Guest Log:   inflating: s_cerevisiae.2.ebwt     

2019-08-04 21:38:03 (7836): Guest Log:   inflating: s_cerevisiae.3.ebwt     

2019-08-04 21:38:03 (7836): Guest Log:   inflating: s_cerevisiae.4.ebwt     

2019-08-04 21:38:03 (7836): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  

2019-08-04 21:38:03 (7836): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  

2019-08-04 21:38:03 (7836): Guest Log:   inflating: make_s_cerevisiae.sh    

2019-08-04 21:38:03 (7836): Guest Log: # reads processed: 1

2019-08-04 21:38:03 (7836): Guest Log: # reads with at least one reported alignment: 1 (100.00%)

2019-08-04 21:38:03 (7836): Guest Log: # reads that failed to align: 0 (0.00%)

2019-08-04 21:38:03 (7836): Guest Log: Reported 1 alignments

2019-08-04 21:38:03 (7836): Guest Log: Postrun commands...

2019-08-04 21:38:03 (7836): Guest Log: boinc_app exited (0)

2019-08-04 21:38:03 (7836): Guest Log: Saving results...

2019-08-04 21:38:03 (7836): Guest Log: make_s_cerevisiae.sh

2019-08-04 21:38:03 (7836): Guest Log: res_bowtie.txt

2019-08-04 21:38:03 (7836): VM Completion File Detected.
2019-08-04 21:38:03 (7836): Powering off VM.
2019-08-04 21:38:04 (7836): Successfully stopped VM.
2019-08-04 21:38:09 (7836): Deregistering VM. (boinc_66e6b682ee17ac80, slot#2)
2019-08-04 21:38:09 (7836): Removing virtual disk drive(s) from VM.
2019-08-04 21:38:09 (7836): Removing network bandwidth throttle group from VM.
2019-08-04 21:38:09 (7836): Removing storage controller(s) from VM.
2019-08-04 21:38:09 (7836): Removing VM from VirtualBox.
21:38:14 (7836): called boinc_finish(0)

</stderr_txt>
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