Task 242533

Name boinc2docker_8032_1564889699.334377_0
Workunit 108020
Created 4 Aug 2019, 3:35:02 UTC
Sent 4 Aug 2019, 4:11:28 UTC
Report deadline 11 Aug 2019, 4:11:28 UTC
Received 4 Aug 2019, 10:20:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1714
Run time 25 min 15 sec
CPU time 21 min 7 sec
Validate state Valid
Credit 16.27
Device peak FLOPS 8.74 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 92.13 MB
Peak swap size 105.40 MB
Peak disk usage 238.11 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
for VM. (4)
2019-08-04 09:41:08 (15660): Setting Chipset Options for VM.
2019-08-04 09:41:08 (15660): Setting Boot Options for VM.
2019-08-04 09:41:08 (15660): Enabling VM Network Access.
2019-08-04 09:41:08 (15660): Setting Network Configuration for NAT.
2019-08-04 09:41:08 (15660): Disabling USB Support for VM.
2019-08-04 09:41:08 (15660): Disabling COM Port Support for VM.
2019-08-04 09:41:08 (15660): Disabling LPT Port Support for VM.
2019-08-04 09:41:08 (15660): Disabling Audio Support for VM.
2019-08-04 09:41:08 (15660): Disabling Clipboard Support for VM.
2019-08-04 09:41:08 (15660): Disabling Drag and Drop Support for VM.
2019-08-04 09:41:08 (15660): Adding storage controller(s) to VM.
2019-08-04 09:41:08 (15660): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-08-04 09:41:08 (15660): Adding VirtualBox Guest Additions to VM.
2019-08-04 09:41:08 (15660): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-08-04 09:41:08 (15660): Enabling shared directory for VM.
2019-08-04 09:41:08 (15660): Starting VM. (boinc_166aacd9423d3930, slot#3)
2019-08-04 09:41:21 (15660): Guest Log: BIOS: VirtualBox 5.2.8

2019-08-04 09:41:21 (15660): Guest Log: CPUID EDX: 0x178bfbff

2019-08-04 09:41:21 (15660): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-08-04 09:41:21 (15660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-08-04 09:41:21 (15660): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-08-04 09:41:21 (15660): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-08-04 09:41:21 (15660): Guest Log: BIOS: Booting from CD-ROM...

2019-08-04 09:41:21 (15660): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-08-04 09:41:21 (15660): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-08-04 09:41:21 (15660): Successfully started VM. (PID = '10520')
2019-08-04 09:41:21 (15660): Reporting VM Process ID to BOINC.
2019-08-04 09:41:26 (15660): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-04 09:41:36 (15660): Preference change detected
2019-08-04 09:41:36 (15660): Setting CPU throttle for VM. (100%)
2019-08-04 09:41:36 (15660): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-04 09:41:41 (15660): Guest Log: net.ipv4.ip_forward = 1

2019-08-04 09:41:41 (15660): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-08-04 09:41:41 (15660): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 09:41:41 (15660): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-08-04 09:41:41 (15660): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 09:41:41 (15660): Guest Log: Segmentation fault

2019-08-04 09:41:41 (15660): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-08-04 09:41:41 (15660): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-08-04 09:41:41 (15660): Guest Log: automount ...

2019-08-04 09:41:41 (15660): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-08-04 09:41:41 (15660): Guest Log: automount over.

2019-08-04 09:41:41 (15660): Guest Log: Setting hostname to boot2docker Done.

2019-08-04 09:41:41 (15660): Guest Log: Sun Aug  4 09:41:34 UTC 2019 dhcp -------------------------------

2019-08-04 09:41:46 (15660): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1101)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00 (1343)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1344)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1345)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1346)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1347)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1348)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1349)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1350)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1351)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1352)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1353)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1354)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1355)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1356)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1357)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1358)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1359)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1360)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1361)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1362)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1363)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1364)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1365)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1366)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1367)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1368)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1369)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1370)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1371)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1372)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1373)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1374)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1375)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1376)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1377)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1378)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1379)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1380)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1381)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1382)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1383)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1384)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1385)

2019-08-04 09:41:46 (15660): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1386)

2019-08-04 09:41:46 (15660): Guest Log: Sun Aug  4 09:41:40 UTC 2019 dhcp -------------------------------

2019-08-04 09:41:46 (15660): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000227 main     Log opened 2019-08-04T09:41:41.000328000Z

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000521 main     OS Product: Linux

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000607 main     OS Release: 4.1.19-boot2docker

2019-08-04 09:41:46 (15660): Guest Log: VBox00:00:00.000728 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2S

2019-08-04 09:41:46 (15660): Guest Log: rvice 5.00:00:00.000844 main     Executable: /sbin/VBoxService

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000846 main     Process ID: 905.

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000847 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 09:41:46 (15660): Guest Log:  r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.002488 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000227 main     Log opened 2019-08-04T09:41:41.000328000Z

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000521 main     OS Product: Linux

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000607 main     OS Release: 4.1.19-boot2docker

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.011781 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-08-04 09:41:46 (15660): Guest Log: :00:000:00:00.011963 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-08-04 09:41:46 (15660): Guest Log: 000728 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000844 main     Executable: /sbin/VBoxService

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000846 main     Process ID: 905

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.000847 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 09:41:46 (15660): Guest Log: 00:00:00.002488 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 09:41:46 (15660): Guest Log: Mounting BOINC shared/...

2019-08-04 09:41:46 (15660): Guest Log: -------------------

2019-08-04 09:41:46 (15660): Guest Log: Sun Aug  4 06:41:43 UTC 2019

2019-08-04 09:41:51 (15660): Guest Log: 00:00:05.016283 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-08-04 09:41:51 (15660): Guest Log: Sun Aug  4 06:41:48 UTC 2019

2019-08-04 09:41:51 (15660): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-08-04 09:41:51 (15660): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-08-04 09:41:51 (15660): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-08-04 09:41:51 (15660): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 09:41:51 (15660): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-08-04 09:41:51 (15660): Guest Log:     link/ether ee:91:e5:99:df:bd brd ff:ff:ff:ff:ff:ff

2019-08-04 09:41:51 (15660): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-08-04 09:41:51 (15660): Guest Log:     link/ether 08:00:27:7f:03:05 brd ff:ff:ff:ff:ff:ff

2019-08-04 09:41:51 (15660): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-08-04 09:41:51 (15660): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 09:41:51 (15660): Guest Log: -------------------

2019-08-04 09:41:51 (15660): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-08-04 09:41:51 (15660): Guest Log: Waiting for Docker daemon to start...

2019-08-04 09:41:51 (15660): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 09:41:51 (15660): Guest Log: Running boinc_app...

2019-08-04 09:41:51 (15660): Guest Log: Importing Docker image from BOINC...

2019-08-04 09:41:56 (15660): Guest Log: 00:00:10.017972 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-08-04 09:42:42 (15660): Guest Log: Prerun diagnostics...

2019-08-04 09:42:42 (15660): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 09:42:42 (15660): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        13 months ago       697 MB

2019-08-04 09:42:42 (15660): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-08-04 09:42:42 (15660): Guest Log: 705.2M	/var/lib/docker

2019-08-04 09:42:42 (15660): Guest Log:               total        used        free      shared  buff/cache   available

2019-08-04 09:42:42 (15660): Guest Log: Mem:           3219          52        2248         869         917        2251

2019-08-04 09:42:42 (15660): Guest Log: Swap:           754           0         754

2019-08-04 09:42:42 (15660): Guest Log: Prerun commands...

2019-08-04 09:42:42 (15660): Guest Log: Running... 

2019-08-04 09:42:57 (15660): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 09:42:57 (15660): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 09:42:57 (15660): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 09:42:57 (15660): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 09:42:57 (15660): Guest Log: 100  211k  100  211k    0     0  13308      0  0:00:16  0:00:16 --:--:--  203k

2019-08-04 09:43:12 (15660): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 09:43:12 (15660): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 09:43:12 (15660): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 09:43:12 (15660): Guest Log: 102  3878  102  3878    0     0    251      0  0:00:15  0:00:15 --:--:-- 18466

2019-08-04 09:43:12 (15660): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 09:43:22 (15660): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 09:43:37 (15660): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 09:43:37 (15660): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 09:43:37 (15660): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 09:43:37 (15660): Guest Log: 102  3983  102  3983    0     0    258      0  0:00:15  0:00:15 --:--:-- 18966

2019-08-04 09:43:52 (15660): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 09:43:52 (15660): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 09:43:57 (15660): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 09:43:57 (15660): Guest Log:  95  171k   95  164k    0     0  10368      0  0:00:16  0:00:16 --:--:--  165k

2019-08-04 09:43:57 (15660): Guest Log: 100  171k  100  171k    0     0  10858      0  0:00:16  0:00:16 --:--:--  172k

2019-08-04 09:44:12 (15660): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 09:44:12 (15660): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 09:44:12 (15660): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 09:44:12 (15660): Guest Log: 102  3781  102  3781    0     0    245      0  0:00:15  0:00:15 --:--:-- 19000

2019-08-04 09:44:27 (15660): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 09:44:27 (15660): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 09:44:27 (15660): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 09:44:27 (15660): Guest Log: 102  3781  102  3781    0     0    245      0  0:00:15  0:00:15 --:--:-- 18090

2019-08-04 09:44:42 (15660): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 09:44:42 (15660): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 09:44:42 (15660): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 09:44:42 (15660): Guest Log: 157   157  157   157    0     0     10      0  0:00:15  0:00:15 --:--:--   792

2019-08-04 09:44:42 (15660): Guest Log: #################################################################

2019-08-04 09:44:42 (15660): Guest Log: # If you used AutoDock Vina in your work, please cite:          #

2019-08-04 09:44:42 (15660): Guest Log: #                                                               #

2019-08-04 09:44:42 (15660): Guest Log: # O. Trott, A. J. Olson,                                        #

2019-08-04 09:44:42 (15660): Guest Log: # AutoDock Vina: improving the speed and accuracy of docking    #

2019-08-04 09:44:42 (15660): Guest Log: # with a new scoring function, efficient optimization and       #

2019-08-04 09:44:42 (15660): Guest Log: # multithreading, Journal of Computational Chemistry 31 (2010)  #

2019-08-04 09:44:42 (15660): Guest Log: # 455-461                                                       #

2019-08-04 09:44:42 (15660): Guest Log: #                                                               #

2019-08-04 09:44:42 (15660): Guest Log: # DOI 10.1002/jcc.21334                                         #

2019-08-04 09:44:42 (15660): Guest Log: #                                                               #

2019-08-04 09:44:42 (15660): Guest Log: # Please see http://vina.scripps.edu for more information.      #

2019-08-04 09:44:42 (15660): Guest Log: #################################################################

2019-08-04 09:44:42 (15660): Guest Log: Reading input ... done.

2019-08-04 09:44:42 (15660): Guest Log: Setting up the scoring function ... done.

2019-08-04 09:44:47 (15660): Guest Log: Analyzing the binding site ... done.

2019-08-04 09:44:47 (15660): Guest Log: Using random seed: -1862509255

2019-08-04 09:44:47 (15660): Guest Log: Performing search ... 

2019-08-04 09:44:47 (15660): Guest Log: 0%   10   20   30   40   50   60   70   80   90   100%

2019-08-04 09:44:47 (15660): Guest Log: |----|----|----|----|----|----|----|----|----|----|

2019-08-04 09:50:34 (15660): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 09:50:44 (15660): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 09:52:21 (15660): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 09:52:41 (15660): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 09:53:42 (15660): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 09:53:52 (15660): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 10:32:09 (8484): vboxwrapper (7.9.26200): starting
2019-08-04 10:32:12 (8484): Feature: Checkpoint interval offset (508 seconds)
2019-08-04 10:32:12 (8484): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-08-04 10:32:12 (8484): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-04 10:32:12 (8484): Guest Log: BIOS: VirtualBox 5.2.8

2019-08-04 10:32:12 (8484): Guest Log: CPUID EDX: 0x178bfbff

2019-08-04 10:32:12 (8484): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-08-04 10:32:12 (8484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-08-04 10:32:12 (8484): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-08-04 10:32:12 (8484): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-08-04 10:32:12 (8484): Guest Log: BIOS: Booting from CD-ROM...

2019-08-04 10:32:12 (8484): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-08-04 10:32:12 (8484): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-08-04 10:32:12 (8484): Guest Log: net.ipv4.ip_forward = 1

2019-08-04 10:32:12 (8484): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-08-04 10:32:12 (8484): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 10:32:12 (8484): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-08-04 10:32:12 (8484): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 10:32:12 (8484): Guest Log: Segmentation fault

2019-08-04 10:32:12 (8484): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-08-04 10:32:12 (8484): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-08-04 10:32:12 (8484): Guest Log: automount ...

2019-08-04 10:32:12 (8484): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-08-04 10:32:12 (8484): Guest Log: automount over.

2019-08-04 10:32:12 (8484): Guest Log: Setting hostname to boot2docker Done.

2019-08-04 10:32:12 (8484): Guest Log: Sun Aug  4 09:41:34 UTC 2019 dhcp -------------------------------

2019-08-04 10:32:12 (8484): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1101)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00 (1343)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1344)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1345)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1346)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1347)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1348)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1349)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1350)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1351)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1352)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1353)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1354)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1355)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1356)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1357)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1358)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1359)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1360)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1361)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1362)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1363)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1364)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1365)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1366)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1367)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1368)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1369)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1370)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1371)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1372)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1373)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1374)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1375)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1376)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1377)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1378)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1379)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1380)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1381)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1382)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1383)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1384)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1385)

2019-08-04 10:32:12 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1386)

2019-08-04 10:32:12 (8484): Guest Log: Sun Aug  4 09:41:40 UTC 2019 dhcp -------------------------------

2019-08-04 10:32:12 (8484): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000227 main     Log opened 2019-08-04T09:41:41.000328000Z

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000521 main     OS Product: Linux

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000607 main     OS Release: 4.1.19-boot2docker

2019-08-04 10:32:12 (8484): Guest Log: VBox00:00:00.000728 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2S

2019-08-04 10:32:12 (8484): Guest Log: rvice 5.00:00:00.000844 main     Executable: /sbin/VBoxService

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000846 main     Process ID: 905.

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000847 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 10:32:12 (8484): Guest Log:  r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.002488 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000227 main     Log opened 2019-08-04T09:41:41.000328000Z

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000521 main     OS Product: Linux

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000607 main     OS Release: 4.1.19-boot2docker

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.011781 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-08-04 10:32:12 (8484): Guest Log: :00:000:00:00.011963 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-08-04 10:32:12 (8484): Guest Log: 000728 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000844 main     Executable: /sbin/VBoxService

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000846 main     Process ID: 905

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.000847 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 10:32:12 (8484): Guest Log: 00:00:00.002488 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 10:32:12 (8484): Guest Log: Mounting BOINC shared/...

2019-08-04 10:32:12 (8484): Guest Log: -------------------

2019-08-04 10:32:12 (8484): Guest Log: Sun Aug  4 06:41:43 UTC 2019

2019-08-04 10:32:12 (8484): Guest Log: 00:00:05.016283 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-08-04 10:32:12 (8484): Guest Log: Sun Aug  4 06:41:48 UTC 2019

2019-08-04 10:32:12 (8484): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-08-04 10:32:12 (8484): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-08-04 10:32:12 (8484): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-08-04 10:32:12 (8484): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 10:32:12 (8484): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-08-04 10:32:12 (8484): Guest Log:     link/ether ee:91:e5:99:df:bd brd ff:ff:ff:ff:ff:ff

2019-08-04 10:32:12 (8484): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-08-04 10:32:12 (8484): Guest Log:     link/ether 08:00:27:7f:03:05 brd ff:ff:ff:ff:ff:ff

2019-08-04 10:32:12 (8484): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-08-04 10:32:12 (8484): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 10:32:12 (8484): Guest Log: -------------------

2019-08-04 10:32:12 (8484): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-08-04 10:32:12 (8484): Guest Log: Waiting for Docker daemon to start...

2019-08-04 10:32:12 (8484): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 10:32:12 (8484): Guest Log: Running boinc_app...

2019-08-04 10:32:12 (8484): Guest Log: Importing Docker image from BOINC...

2019-08-04 10:32:12 (8484): Guest Log: 00:00:10.017972 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-08-04 10:32:12 (8484): Guest Log: Prerun diagnostics...

2019-08-04 10:32:12 (8484): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 10:32:13 (8484): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        13 months ago       697 MB

2019-08-04 10:32:13 (8484): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-08-04 10:32:13 (8484): Guest Log: 705.2M	/var/lib/docker

2019-08-04 10:32:13 (8484): Guest Log:               total        used        free      shared  buff/cache   available

2019-08-04 10:32:13 (8484): Guest Log: Mem:           3219          52        2248         869         917        2251

2019-08-04 10:32:13 (8484): Guest Log: Swap:           754           0         754

2019-08-04 10:32:13 (8484): Guest Log: Prerun commands...

2019-08-04 10:32:13 (8484): Guest Log: Running... 

2019-08-04 10:32:13 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 10:32:13 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 10:32:13 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 10:32:13 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 10:32:13 (8484): Guest Log: 100  211k  100  211k    0     0  13308      0  0:00:16  0:00:16 --:--:--  203k

2019-08-04 10:32:13 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 10:32:13 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 10:32:13 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 10:32:13 (8484): Guest Log: 102  3878  102  3878    0     0    251      0  0:00:15  0:00:15 --:--:-- 18466

2019-08-04 10:32:13 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 10:32:13 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 10:32:13 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 10:32:13 (8484): Guest Log: 102  3983  102  3983    0     0    258      0  0:00:15  0:00:15 --:--:-- 18966

2019-08-04 10:32:13 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 10:32:13 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 10:32:13 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 10:32:13 (8484): Guest Log:  95  171k   95  164k    0     0  10368      0  0:00:16  0:00:16 --:--:--  165k

2019-08-04 10:32:13 (8484): Guest Log: 100  171k  100  171k    0     0  10858      0  0:00:16  0:00:16 --:--:--  172k

2019-08-04 10:32:13 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 10:32:13 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 10:32:13 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 10:32:13 (8484): Guest Log: 102  3781  102  3781    0     0    245      0  0:00:15  0:00:15 --:--:-- 19000

2019-08-04 10:32:13 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 10:32:13 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 10:32:13 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 10:32:13 (8484): Guest Log: 102  3781  102  3781    0     0    245      0  0:00:15  0:00:15 --:--:-- 18090

2019-08-04 10:32:13 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 10:32:13 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 10:32:13 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 10:32:13 (8484): Guest Log: 157   157  157   157    0     0     10      0  0:00:15  0:00:15 --:--:--   792

2019-08-04 10:32:13 (8484): Guest Log: #################################################################

2019-08-04 10:32:13 (8484): Guest Log: # If you used AutoDock Vina in your work, please cite:          #

2019-08-04 10:32:13 (8484): Guest Log: #                                                               #

2019-08-04 10:32:13 (8484): Guest Log: # O. Trott, A. J. Olson,                                        #

2019-08-04 10:32:13 (8484): Guest Log: # AutoDock Vina: improving the speed and accuracy of docking    #

2019-08-04 10:32:13 (8484): Guest Log: # with a new scoring function, efficient optimization and       #

2019-08-04 10:32:13 (8484): Guest Log: # multithreading, Journal of Computational Chemistry 31 (2010)  #

2019-08-04 10:32:13 (8484): Guest Log: # 455-461                                                       #

2019-08-04 10:32:13 (8484): Guest Log: #                                                               #

2019-08-04 10:32:13 (8484): Guest Log: # DOI 10.1002/jcc.21334                                         #

2019-08-04 10:32:13 (8484): Guest Log: #                                                               #

2019-08-04 10:32:13 (8484): Guest Log: # Please see http://vina.scripps.edu for more information.      #

2019-08-04 10:32:13 (8484): Guest Log: #################################################################

2019-08-04 10:32:13 (8484): Guest Log: Reading input ... done.

2019-08-04 10:32:13 (8484): Guest Log: Setting up the scoring function ... done.

2019-08-04 10:32:13 (8484): Guest Log: Analyzing the binding site ... done.

2019-08-04 10:32:13 (8484): Guest Log: Using random seed: -1862509255

2019-08-04 10:32:13 (8484): Guest Log: Performing search ... 

2019-08-04 10:32:13 (8484): Guest Log: 0%   10   20   30   40   50   60   70   80   90   100%

2019-08-04 10:32:13 (8484): Guest Log: |----|----|----|----|----|----|----|----|----|----|

2019-08-04 10:32:13 (8484): Starting VM. (boinc_166aacd9423d3930, slot#3)
2019-08-04 10:32:36 (8484): Successfully started VM. (PID = '11928')
2019-08-04 10:32:36 (8484): Reporting VM Process ID to BOINC.
2019-08-04 10:32:41 (8484): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-04 10:33:01 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 10:39:30 (8484): Preference change detected
2019-08-04 10:39:30 (8484): Setting CPU throttle for VM. (100%)
2019-08-04 10:39:30 (8484): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-04 10:39:30 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 10:39:35 (8484): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1112)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00 (1349)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1350)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1351)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1352)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1353)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1354)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1355)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1356)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1357)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1358)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1359)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1360)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1361)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1362)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1363)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1364)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1365)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1366)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1367)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1368)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1369)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1370)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1371)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1372)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1373)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1374)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1375)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1376)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1377)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1378)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1379)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1380)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1381)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1382)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1383)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1384)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1385)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1386)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1387)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1388)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1389)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1390)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1391)

2019-08-04 10:39:35 (8484): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1392)

2019-08-04 10:39:35 (8484): Guest Log: Sun Aug  4 10:32:59 UTC 2019 dhcp -------------------------------

2019-08-04 10:39:35 (8484): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000228 main     Log opened 2019-08-04T10:32:59.188592000Z

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000512 main     OS Product: Linux

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000582 main     OS Release: 4.1.19-boot2docker

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000684 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 10:39:35 (8484): Guest Log: VBo00:00:00.000753 main     Executable: /sbin/VBoxService

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000756 main     Process ID: 877

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000757 main     Package type: LINUX_64BITS_GENERICe

2019-08-04 10:39:35 (8484): Guest Log: vice 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.002705 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000228 main     Log opened 2019-08-04T10:32:59.188592000Z

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000512 main     OS Product: Linux

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000582 main     OS Release: 4.1.19-boot2docker

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000684 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000753 main     Executable: /sbin/VBoxService

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000756 main     Process ID: 877

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.000757 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.002705 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.078036 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-08-04 10:39:35 (8484): Guest Log: 00:00:00.078200 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-08-04 10:39:35 (8484): Guest Log: Mounting BOINC shared/...

2019-08-04 10:39:35 (8484): Guest Log: -------------------

2019-08-04 10:39:35 (8484): Guest Log: Sun Aug  4 07:39:30 UTC 2019

2019-08-04 10:39:40 (8484): Guest Log: 00:00:05.083681 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-08-04 10:39:40 (8484): Guest Log: Sun Aug  4 07:39:35 UTC 2019

2019-08-04 10:39:40 (8484): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-08-04 10:39:40 (8484): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-08-04 10:39:40 (8484): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-08-04 10:39:40 (8484): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 10:39:40 (8484): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-08-04 10:39:40 (8484): Guest Log:     link/ether 8e:b4:e3:46:c8:ca brd ff:ff:ff:ff:ff:ff

2019-08-04 10:39:40 (8484): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-08-04 10:39:40 (8484): Guest Log:     link/ether 08:00:27:7f:03:05 brd ff:ff:ff:ff:ff:ff

2019-08-04 10:39:40 (8484): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-08-04 10:39:40 (8484): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 10:39:40 (8484): Guest Log: -------------------

2019-08-04 10:39:40 (8484): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-08-04 10:39:40 (8484): Guest Log: Waiting for Docker daemon to start...

2019-08-04 10:39:40 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 10:49:20 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 10:49:25 (8484): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 10:49:25 (8484): Guest Log: Running boinc_app...

2019-08-04 10:49:25 (8484): Guest Log: Importing Docker image from BOINC...

2019-08-04 10:49:25 (8484): Guest Log: 00:00:10.084961 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-08-04 10:49:41 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 10:50:32 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 10:50:42 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 10:52:02 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 10:52:12 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 10:54:03 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 10:54:14 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 10:55:04 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 10:55:15 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:01:02 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:01:14 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:17:03 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:17:16 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:29:16 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:29:26 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:30:16 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:30:26 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:30:47 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:30:57 (8484): Guest Log: Prerun diagnostics...

2019-08-04 11:30:57 (8484): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 11:30:57 (8484): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        13 months ago       697 MB

2019-08-04 11:30:57 (8484): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-08-04 11:30:57 (8484): Guest Log: 705.2M	/var/lib/docker

2019-08-04 11:30:57 (8484): Guest Log:               total        used        free      shared  buff/cache   available

2019-08-04 11:30:57 (8484): Guest Log: Mem:           3219          64        2236         869         917        2239

2019-08-04 11:30:57 (8484): Guest Log: Swap:           755           0         755

2019-08-04 11:30:57 (8484): Guest Log: Prerun commands...

2019-08-04 11:30:57 (8484): Guest Log: Running... 

2019-08-04 11:30:57 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:33:17 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:33:27 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:33:37 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:33:42 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 11:33:42 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 11:33:42 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 11:33:42 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 11:33:42 (8484): Guest Log: 100  211k  100  211k    0     0  13296      0  0:00:16  0:00:16 --:--:--  198k

2019-08-04 11:33:42 (8484): Guest Log: 100  211k  100  211k    0     0  13296      0  0:00:16  0:00:16 --:--:--  198k

2019-08-04 11:33:47 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:34:08 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:34:18 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 11:34:18 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 11:34:18 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 11:34:18 (8484): Guest Log: 102  3878  102  3878    0     0    251      0  0:00:15  0:00:15 --:--:-- 19103

2019-08-04 11:34:28 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:34:38 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:34:43 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 11:34:43 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 11:34:43 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 11:34:43 (8484): Guest Log: 102  3983  102  3983    0     0    258      0  0:00:15  0:00:15 --:--:-- 19149

2019-08-04 11:34:48 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:35:08 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:35:18 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 11:35:18 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 11:35:23 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 11:35:23 (8484): Guest Log:  95  171k   95  164k    0     0  10390      0  0:00:16  0:00:16 --:--:--  170k

2019-08-04 11:35:23 (8484): Guest Log: 100  171k  100  171k    0     0  10880      0  0:00:16  0:00:16 --:--:--  176k

2019-08-04 11:35:28 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:35:48 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:35:58 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 11:35:58 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 11:35:58 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 11:35:58 (8484): Guest Log: 102  3781  102  3781    0     0    245      0  0:00:15  0:00:15 --:--:-- 18354

2019-08-04 11:35:58 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:36:18 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:36:34 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 11:36:34 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 11:36:34 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 11:36:34 (8484): Guest Log: 102  3781  102  3781    0     0    245      0  0:00:15  0:00:15 --:--:-- 17668

2019-08-04 11:36:39 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:36:59 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:37:09 (8484): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 11:37:09 (8484): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 11:37:09 (8484): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:15 --:--:--     0

2019-08-04 11:37:09 (8484): Guest Log: 157   157  157   157    0     0     10      0  0:00:15  0:00:15 --:--:--   762

2019-08-04 11:37:09 (8484): Guest Log: #################################################################

2019-08-04 11:37:09 (8484): Guest Log: # If you used AutoDock Vina in your work, please cite:          #

2019-08-04 11:37:09 (8484): Guest Log: #                                                               #

2019-08-04 11:37:09 (8484): Guest Log: # O. Trott, A. J. Olson,                                        #

2019-08-04 11:37:09 (8484): Guest Log: # AutoDock Vina: improving the speed and accuracy of docking    #

2019-08-04 11:37:09 (8484): Guest Log: # with a new scoring function, efficient optimization and       #

2019-08-04 11:37:09 (8484): Guest Log: # multithreading, Journal of Computational Chemistry 31 (2010)  #

2019-08-04 11:37:09 (8484): Guest Log: # 455-461                                                       #

2019-08-04 11:37:09 (8484): Guest Log: #                                                               #

2019-08-04 11:37:09 (8484): Guest Log: # DOI 10.1002/jcc.21334                                         #

2019-08-04 11:37:09 (8484): Guest Log: #                                                               #

2019-08-04 11:37:09 (8484): Guest Log: # Please see http://vina.scripps.edu for more information.      #

2019-08-04 11:37:09 (8484): Guest Log: #################################################################

2019-08-04 11:37:09 (8484): Guest Log: Reading input ... done.

2019-08-04 11:37:09 (8484): Guest Log: Setting up the scoring function ... done.

2019-08-04 11:37:14 (8484): Guest Log: Analyzing the binding site ... done.

2019-08-04 11:37:14 (8484): Guest Log: Using random seed: 867736872

2019-08-04 11:37:14 (8484): Guest Log: Performing search ... 

2019-08-04 11:37:14 (8484): Guest Log: 0%   10   20   30   40   50   60   70   80   90   100%

2019-08-04 11:37:14 (8484): Guest Log: |----|----|----|----|----|----|----|----|----|----|

2019-08-04 11:37:19 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:37:29 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:37:39 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:37:59 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:38:09 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:38:19 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:38:49 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:39:10 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:39:20 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:39:40 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:40:00 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:41:10 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:42:00 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:48:02 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:48:09 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:52:41 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:52:51 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:55:12 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:55:22 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 11:57:32 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 11:57:42 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:03:59 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:04:09 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:05:00 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:07:10 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:07:20 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:07:51 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:08:21 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:08:31 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:08:41 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:09:42 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:11:02 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:11:32 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:11:42 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:12:12 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:12:32 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:13:13 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:13:53 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:14:03 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:14:43 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:14:53 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:17:44 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:18:34 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:18:44 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:18:54 (8484): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 12:19:14 (8484): VM state change detected. (old = 'paused', new = 'running')
2019-08-04 12:19:34 (8484): Guest Log: ***************************************************

2019-08-04 12:19:34 (8484): Guest Log: done.

2019-08-04 12:19:34 (8484): Guest Log: Refining results ... done.

2019-08-04 12:19:34 (8484): Guest Log: mode |   affinity | dist from best mode

2019-08-04 12:19:34 (8484): Guest Log:      | (kcal/mol) | rmsd l.b.| rmsd u.b.

2019-08-04 12:19:34 (8484): Guest Log: -----+------------+----------+----------

2019-08-04 12:19:34 (8484): Guest Log:    1        -10.9      0.000      0.000

2019-08-04 12:19:34 (8484): Guest Log:    2        -10.7      2.495      3.606

2019-08-04 12:19:34 (8484): Guest Log:    3        -10.6      1.967      3.294

2019-08-04 12:19:34 (8484): Guest Log:    4        -10.6      0.939      1.881

2019-08-04 12:19:34 (8484): Guest Log:    5        -10.5      2.616      3.840

2019-08-04 12:19:34 (8484): Guest Log:    6        -10.3      2.831      4.579

2019-08-04 12:19:34 (8484): Guest Log:    7         -9.6      3.119      4.573

2019-08-04 12:19:34 (8484): Guest Log:    8         -9.5      1.668      2.653

2019-08-04 12:19:34 (8484): Guest Log:    9         -8.4      2.836      4.385

2019-08-04 12:19:34 (8484): Guest Log: Writing output ... done.

2019-08-04 12:19:34 (8484): Guest Log: Postrun commands...

2019-08-04 12:19:34 (8484): Guest Log: boinc_app exited (0)

2019-08-04 12:19:34 (8484): Guest Log: Saving results...

2019-08-04 12:19:34 (8484): Guest Log: 1OPK.pdbqt

2019-08-04 12:19:39 (8484): Guest Log: ZINC00000567.pdbqt

2019-08-04 12:19:39 (8484): Guest Log: all.pdbqt

2019-08-04 12:19:39 (8484): Guest Log: ligand.pdbqt

2019-08-04 12:19:39 (8484): Guest Log: ligand_experiment.pdbqt

2019-08-04 12:19:39 (8484): Guest Log: protein.pdbqt

2019-08-04 12:19:39 (8484): VM Completion File Detected.
2019-08-04 12:19:40 (8484): Powering off VM.
2019-08-04 12:19:41 (8484): Successfully stopped VM.
2019-08-04 12:19:46 (8484): Deregistering VM. (boinc_166aacd9423d3930, slot#3)
2019-08-04 12:19:46 (8484): Removing virtual disk drive(s) from VM.
2019-08-04 12:19:46 (8484): Removing network bandwidth throttle group from VM.
2019-08-04 12:19:46 (8484): Removing storage controller(s) from VM.
2019-08-04 12:19:46 (8484): Removing VM from VirtualBox.
12:19:52 (8484): called boinc_finish(0)

</stderr_txt>
]]>