Task 241312

Name boinc2docker_9582_1564889282.227795_1
Workunit 107409
Created 4 Aug 2019, 3:28:04 UTC
Sent 4 Aug 2019, 3:57:00 UTC
Report deadline 11 Aug 2019, 3:57:00 UTC
Received 4 Aug 2019, 10:26:39 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 837
Run time 14 min 28 sec
CPU time 13 min 5 sec
Validate state Valid
Credit 20.91
Device peak FLOPS 15.56 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 89.43 MB
Peak swap size 115.04 MB
Peak disk usage 238.32 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-08-04 01:29:47 (16892): vboxwrapper (7.9.26200): starting
2019-08-04 01:29:47 (16892): Feature: Checkpoint interval offset (410 seconds)
2019-08-04 01:29:47 (16892): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-08-04 01:29:47 (16892): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-04 01:29:47 (16892): Create VM. (boinc_2a68f7a46f47db4c, slot#8)
2019-08-04 01:29:47 (16892): Updating drive controller type and model for desired configuration.
2019-08-04 01:29:48 (16892): Setting Memory Size for VM. (3288MB)
2019-08-04 01:29:48 (16892): Setting CPU Count for VM. (4)
2019-08-04 01:29:48 (16892): Setting Chipset Options for VM.
2019-08-04 01:29:48 (16892): Setting Boot Options for VM.
2019-08-04 01:29:48 (16892): Enabling VM Network Access.
2019-08-04 01:29:48 (16892): Setting Network Configuration for NAT.
2019-08-04 01:29:48 (16892): Disabling USB Support for VM.
2019-08-04 01:29:48 (16892): Disabling COM Port Support for VM.
2019-08-04 01:29:48 (16892): Disabling LPT Port Support for VM.
2019-08-04 01:29:48 (16892): Disabling Audio Support for VM.
2019-08-04 01:29:48 (16892): Disabling Clipboard Support for VM.
2019-08-04 01:29:48 (16892): Disabling Drag and Drop Support for VM.
2019-08-04 01:29:48 (16892): Adding storage controller(s) to VM.
2019-08-04 01:29:48 (16892): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-08-04 01:29:48 (16892): Adding VirtualBox Guest Additions to VM.
2019-08-04 01:29:48 (16892): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-08-04 01:29:48 (16892): Enabling shared directory for VM.
2019-08-04 01:29:49 (16892): Starting VM. (boinc_2a68f7a46f47db4c, slot#8)
2019-08-04 01:30:00 (16892): Guest Log: BIOS: VirtualBox 5.2.8

2019-08-04 01:30:00 (16892): Guest Log: CPUID EDX: 0x178bfbff

2019-08-04 01:30:00 (16892): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-08-04 01:30:00 (16892): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-08-04 01:30:00 (16892): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-08-04 01:30:00 (16892): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-08-04 01:30:00 (16892): Guest Log: BIOS: Booting from CD-ROM...

2019-08-04 01:30:00 (16892): Successfully started VM. (PID = '24496')
2019-08-04 01:30:00 (16892): Reporting VM Process ID to BOINC.
2019-08-04 01:30:05 (16892): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-08-04 01:30:05 (16892): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-08-04 01:30:05 (16892): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-04 01:30:15 (16892): Preference change detected
2019-08-04 01:30:15 (16892): Setting CPU throttle for VM. (100%)
2019-08-04 01:30:15 (16892): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-04 01:30:30 (16892): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-08-04 01:30:30 (16892): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-08-04 01:30:30 (16892): Guest Log: net.ipv4.ip_forward = 1

2019-08-04 01:30:30 (16892): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-08-04 01:30:30 (16892): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 01:30:30 (16892): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-08-04 01:30:30 (16892): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 01:30:30 (16892): Guest Log: Segmentation fault

2019-08-04 01:30:30 (16892): Guest Log: automount ...

2019-08-04 01:30:30 (16892): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-08-04 01:30:30 (16892): Guest Log: automount over.

2019-08-04 01:30:30 (16892): Guest Log: Setting hostname to boot2docker Done.

2019-08-04 01:30:30 (16892): Guest Log: Sun Aug  4 01:30:25 UTC 2019 dhcp -------------------------------

2019-08-04 01:30:35 (16892): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1108)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00 (1346)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1347)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1348)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1349)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1350)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1351)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1352)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1353)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1354)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1355)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1356)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1357)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1358)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1359)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1360)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1361)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1362)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1363)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1364)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1365)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1366)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1367)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1368)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1369)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1370)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1371)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1372)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1373)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1374)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1375)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1376)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1377)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1378)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1379)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1380)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1381)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1382)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1383)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1384)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1385)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1386)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1387)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1388)

2019-08-04 01:30:35 (16892): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1389)

2019-08-04 01:30:35 (16892): Guest Log: Sun Aug  4 01:30:31 UTC 2019 dhcp -------------------------------

2019-08-04 01:30:35 (16892): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.000187 main     Log opened 2019-08-04T01:30:31.850822000Z

2019-08-04 01:30:35 (16892): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002006 main     OS Product: Linux

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002105 main     OS Release: 4.1.19-boot2docker

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002152 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002196 main     Executable: /sbin/VBoxService

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002197 main     Process ID: 964

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002199 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.003806 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.000187 main     Log opened 2019-08-04T01:30:31.850822000Z

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.007220 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.007304 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002006 main     OS Product: Linux

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002105 main     OS Release: 4.1.19-boot2docker

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002152 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002196 main     Executable: /sbin/VBoxService

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002197 main     Process ID: 964

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.002199 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 01:30:35 (16892): Guest Log: 00:00:00.003806 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 01:30:35 (16892): Guest Log: Mounting BOINC shared/...

2019-08-04 01:30:35 (16892): Guest Log: -------------------

2019-08-04 01:30:35 (16892): Guest Log: Sun Aug  4 05:30:33 UTC 2019

2019-08-04 01:30:40 (16892): Guest Log: 00:00:05.011292 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-08-04 01:30:40 (16892): Guest Log: Sun Aug  4 05:30:38 UTC 2019

2019-08-04 01:30:40 (16892): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-08-04 01:30:40 (16892): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-08-04 01:30:40 (16892): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-08-04 01:30:40 (16892): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 01:30:40 (16892): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-08-04 01:30:40 (16892): Guest Log:     link/ether 16:63:1e:e1:da:2b brd ff:ff:ff:ff:ff:ff

2019-08-04 01:30:40 (16892): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-08-04 01:30:40 (16892): Guest Log:     link/ether 08:00:27:7f:c6:70 brd ff:ff:ff:ff:ff:ff

2019-08-04 01:30:40 (16892): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-08-04 01:30:40 (16892): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 01:30:40 (16892): Guest Log: -------------------

2019-08-04 01:30:40 (16892): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-08-04 01:30:40 (16892): Guest Log: Waiting for Docker daemon to start...

2019-08-04 01:30:40 (16892): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 01:30:40 (16892): Guest Log: Running boinc_app...

2019-08-04 01:30:40 (16892): Guest Log: Importing Docker image from BOINC...

2019-08-04 01:30:45 (16892): Guest Log: 00:00:10.012109 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-08-04 01:31:30 (16892): Guest Log: Prerun diagnostics...

2019-08-04 01:31:30 (16892): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 01:31:30 (16892): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        13 months ago       697 MB

2019-08-04 01:31:30 (16892): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-08-04 01:31:30 (16892): Guest Log: 705.2M	/var/lib/docker

2019-08-04 01:31:30 (16892): Guest Log:               total        used        free      shared  buff/cache   available

2019-08-04 01:31:30 (16892): Guest Log: Mem:           3219          55        2245         869         917        2248

2019-08-04 01:31:30 (16892): Guest Log: Swap:           755           0         755

2019-08-04 01:31:30 (16892): Guest Log: Prerun commands...

2019-08-04 01:31:30 (16892): Guest Log: Running... 

2019-08-04 01:31:30 (16892): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 01:31:30 (16892): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 01:31:30 (16892): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 01:31:30 (16892): Guest Log:  53  211k   53  113k    0     0   297k      0 --:--:-- --:--:-- --:--:--  468k

2019-08-04 01:31:30 (16892): Guest Log: 100  211k  100  211k    0     0   483k      0 --:--:-- --:--:-- --:--:--  708k

2019-08-04 01:31:30 (16892): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 01:31:30 (16892): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 01:31:30 (16892): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 01:31:30 (16892): Guest Log: 102  3878  102  3878    0     0  20083      0 --:--:-- --:--:-- --:--:-- 54619

2019-08-04 01:31:30 (16892): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 01:31:30 (16892): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 01:31:30 (16892): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 01:31:30 (16892): Guest Log: 102  3983  102  3983    0     0  20372      0 --:--:-- --:--:-- --:--:-- 54561

2019-08-04 01:31:30 (16892): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 01:31:30 (16892): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 01:31:30 (16892): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 01:31:30 (16892): Guest Log: 100  171k  100  171k    0     0   387k      0 --:--:-- --:--:-- --:--:--  563k

2019-08-04 01:31:30 (16892): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 01:31:30 (16892): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 01:31:30 (16892): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 01:31:30 (16892): Guest Log: 102  3781  102  3781    0     0  17888      0 --:--:-- --:--:-- --:--:-- 45554

2019-08-04 01:31:30 (16892): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 01:31:30 (16892): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 01:31:30 (16892): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 01:31:30 (16892): Guest Log: 102  3781  102  3781    0     0  18753      0 --:--:-- --:--:-- --:--:-- 53253

2019-08-04 01:31:30 (16892): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 01:31:30 (16892): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 01:31:30 (16892): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 01:31:30 (16892): Guest Log: 157   157  157   157    0     0   1013      0 --:--:-- --:--:-- --:--:--  2180

2019-08-04 01:31:30 (16892): Guest Log: #################################################################

2019-08-04 01:31:30 (16892): Guest Log: # If you used AutoDock Vina in your work, please cite:          #

2019-08-04 01:31:30 (16892): Guest Log: #                                                               #

2019-08-04 01:31:30 (16892): Guest Log: # O. Trott, A. J. Olson,                                        #

2019-08-04 01:31:30 (16892): Guest Log: # AutoDock Vina: improving the speed and accuracy of docking    #

2019-08-04 01:31:30 (16892): Guest Log: # with a new scoring function, efficient optimization and       #

2019-08-04 01:31:30 (16892): Guest Log: # multithreading, Journal of Computational Chemistry 31 (2010)  #

2019-08-04 01:31:30 (16892): Guest Log: # 455-461                                                       #

2019-08-04 01:31:30 (16892): Guest Log: #                                                               #

2019-08-04 01:31:30 (16892): Guest Log: # DOI 10.1002/jcc.21334                                         #

2019-08-04 01:31:30 (16892): Guest Log: #                                                               #

2019-08-04 01:31:30 (16892): Guest Log: # Please see http://vina.scripps.edu for more information.      #

2019-08-04 01:31:30 (16892): Guest Log: #################################################################

2019-08-04 01:31:35 (16892): Guest Log: Reading input ... done.

2019-08-04 01:31:35 (16892): Guest Log: Setting up the scoring function ... done.

2019-08-04 01:31:35 (16892): Guest Log: Analyzing the binding site ... done.

2019-08-04 01:31:35 (16892): Guest Log: Using random seed: -1862636246

2019-08-04 01:31:35 (16892): Guest Log: Performing search ... 

2019-08-04 01:31:35 (16892): Guest Log: 0%   10   20   30   40   50   60   70   80   90   100%

2019-08-04 01:31:35 (16892): Guest Log: |----|----|----|----|----|----|----|----|----|----|

2019-08-04 01:35:11 (16892): VM state change detected. (old = 'running', new = 'paused')
2019-08-04 01:35:16 (16892): Error 0x80bb0002 in vbox52::VBOX_VM::resume (c:\users\david\documents\boinc_git\boinc\samples\vboxwrapper\vbox_mscom_impl.cpp:1599)
2019-08-04 01:35:16 (16892): Error Source     : ConsoleWrap
2019-08-04 01:35:16 (16892): Error Description: VM is paused due to host power management
2019-08-04 01:35:21 (16892): Error 0x80bb0002 in vbox52::VBOX_VM::resume (c:\users\david\documents\boinc_git\boinc\samples\vboxwrapper\vbox_mscom_impl.cpp:1599)
2019-08-04 01:35:21 (16892): Error Source     : ConsoleWrap
2019-08-04 01:35:21 (16892): Error Description: VM is paused due to host power management
2019-08-04 01:35:26 (16892): Powering off VM.
2019-08-04 01:35:27 (16892): Successfully stopped VM.
2019-08-04 03:00:24 (22796): vboxwrapper (7.9.26200): starting
2019-08-04 03:00:24 (22796): Feature: Checkpoint interval offset (163 seconds)
2019-08-04 03:00:24 (22796): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-08-04 03:00:24 (22796): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-04 03:00:24 (22796): Guest Log: BIOS: VirtualBox 5.2.8

2019-08-04 03:00:24 (22796): Guest Log: CPUID EDX: 0x178bfbff

2019-08-04 03:00:24 (22796): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-08-04 03:00:24 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-08-04 03:00:24 (22796): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-08-04 03:00:24 (22796): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-08-04 03:00:24 (22796): Guest Log: BIOS: Booting from CD-ROM...

2019-08-04 03:00:24 (22796): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-08-04 03:00:24 (22796): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-08-04 03:00:24 (22796): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-08-04 03:00:24 (22796): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-08-04 03:00:24 (22796): Guest Log: net.ipv4.ip_forward = 1

2019-08-04 03:00:24 (22796): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-08-04 03:00:24 (22796): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 03:00:24 (22796): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-08-04 03:00:24 (22796): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-08-04 03:00:24 (22796): Guest Log: Segmentation fault

2019-08-04 03:00:24 (22796): Guest Log: automount ...

2019-08-04 03:00:24 (22796): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-08-04 03:00:24 (22796): Guest Log: automount over.

2019-08-04 03:00:24 (22796): Guest Log: Setting hostname to boot2docker Done.

2019-08-04 03:00:24 (22796): Guest Log: Sun Aug  4 01:30:25 UTC 2019 dhcp -------------------------------

2019-08-04 03:00:24 (22796): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-08-04 03:00:24 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1108)

2019-08-04 03:00:24 (22796): Guest Log:   /sys/devices/LNXSYSTM:00 (1346)

2019-08-04 03:00:24 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1347)

2019-08-04 03:00:24 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1348)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1349)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1350)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1351)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1352)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1353)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1354)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1355)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1356)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1357)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1358)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1359)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1360)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1361)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1362)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1363)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1364)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1365)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1366)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1367)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1368)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1369)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1370)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1371)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1372)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1373)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1374)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1375)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1376)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1377)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1378)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1379)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1380)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1381)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1382)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1383)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1384)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1385)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1386)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1387)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1388)

2019-08-04 03:00:25 (22796): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1389)

2019-08-04 03:00:25 (22796): Guest Log: Sun Aug  4 01:30:31 UTC 2019 dhcp -------------------------------

2019-08-04 03:00:25 (22796): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.000187 main     Log opened 2019-08-04T01:30:31.850822000Z

2019-08-04 03:00:25 (22796): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002006 main     OS Product: Linux

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002105 main     OS Release: 4.1.19-boot2docker

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002152 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002196 main     Executable: /sbin/VBoxService

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002197 main     Process ID: 964

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002199 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.003806 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.000187 main     Log opened 2019-08-04T01:30:31.850822000Z

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.007220 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.007304 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002006 main     OS Product: Linux

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002105 main     OS Release: 4.1.19-boot2docker

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002152 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002196 main     Executable: /sbin/VBoxService

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002197 main     Process ID: 964

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.002199 main     Package type: LINUX_64BITS_GENERIC

2019-08-04 03:00:25 (22796): Guest Log: 00:00:00.003806 main     5.0.16 r105871 started. Verbose level = 0

2019-08-04 03:00:25 (22796): Guest Log: Mounting BOINC shared/...

2019-08-04 03:00:25 (22796): Guest Log: -------------------

2019-08-04 03:00:25 (22796): Guest Log: Sun Aug  4 05:30:33 UTC 2019

2019-08-04 03:00:25 (22796): Guest Log: 00:00:05.011292 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-08-04 03:00:25 (22796): Guest Log: Sun Aug  4 05:30:38 UTC 2019

2019-08-04 03:00:25 (22796): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-08-04 03:00:25 (22796): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-08-04 03:00:25 (22796): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-08-04 03:00:25 (22796): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 03:00:25 (22796): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-08-04 03:00:25 (22796): Guest Log:     link/ether 16:63:1e:e1:da:2b brd ff:ff:ff:ff:ff:ff

2019-08-04 03:00:25 (22796): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-08-04 03:00:25 (22796): Guest Log:     link/ether 08:00:27:7f:c6:70 brd ff:ff:ff:ff:ff:ff

2019-08-04 03:00:25 (22796): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-08-04 03:00:25 (22796): Guest Log:        valid_lft forever preferred_lft forever

2019-08-04 03:00:25 (22796): Guest Log: -------------------

2019-08-04 03:00:25 (22796): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-08-04 03:00:25 (22796): Guest Log: Waiting for Docker daemon to start...

2019-08-04 03:00:25 (22796): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 03:00:25 (22796): Guest Log: Running boinc_app...

2019-08-04 03:00:25 (22796): Guest Log: Importing Docker image from BOINC...

2019-08-04 03:00:25 (22796): Guest Log: 00:00:10.012109 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-08-04 03:00:25 (22796): Guest Log: Prerun diagnostics...

2019-08-04 03:00:25 (22796): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 03:00:25 (22796): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        13 months ago       697 MB

2019-08-04 03:00:25 (22796): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-08-04 03:00:25 (22796): Guest Log: 705.2M	/var/lib/docker

2019-08-04 03:00:25 (22796): Guest Log:               total        used        free      shared  buff/cache   available

2019-08-04 03:00:25 (22796): Guest Log: Mem:           3219          55        2245         869         917        2248

2019-08-04 03:00:25 (22796): Guest Log: Swap:           755           0         755

2019-08-04 03:00:25 (22796): Guest Log: Prerun commands...

2019-08-04 03:00:25 (22796): Guest Log: Running... 

2019-08-04 03:00:25 (22796): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 03:00:25 (22796): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 03:00:25 (22796): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 03:00:25 (22796): Guest Log:  53  211k   53  113k    0     0   297k      0 --:--:-- --:--:-- --:--:--  468k

2019-08-04 03:00:25 (22796): Guest Log: 100  211k  100  211k    0     0   483k      0 --:--:-- --:--:-- --:--:--  708k

2019-08-04 03:00:25 (22796): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 03:00:25 (22796): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 03:00:25 (22796): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 03:00:25 (22796): Guest Log: 102  3878  102  3878    0     0  20083      0 --:--:-- --:--:-- --:--:-- 54619

2019-08-04 03:00:25 (22796): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 03:00:25 (22796): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 03:00:25 (22796): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 03:00:25 (22796): Guest Log: 102  3983  102  3983    0     0  20372      0 --:--:-- --:--:-- --:--:-- 54561

2019-08-04 03:00:25 (22796): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 03:00:25 (22796): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 03:00:25 (22796): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 03:00:25 (22796): Guest Log: 100  171k  100  171k    0     0   387k      0 --:--:-- --:--:-- --:--:--  563k

2019-08-04 03:00:25 (22796): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 03:00:25 (22796): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 03:00:25 (22796): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 03:00:25 (22796): Guest Log: 102  3781  102  3781    0     0  17888      0 --:--:-- --:--:-- --:--:-- 45554

2019-08-04 03:00:25 (22796): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 03:00:25 (22796): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 03:00:25 (22796): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 03:00:25 (22796): Guest Log: 102  3781  102  3781    0     0  18753      0 --:--:-- --:--:-- --:--:-- 53253

2019-08-04 03:00:25 (22796): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 03:00:25 (22796): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 03:00:25 (22796): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-08-04 03:00:25 (22796): Guest Log: 157   157  157   157    0     0   1013      0 --:--:-- --:--:-- --:--:--  2180

2019-08-04 03:00:25 (22796): Guest Log: #################################################################

2019-08-04 03:00:25 (22796): Guest Log: # If you used AutoDock Vina in your work, please cite:          #

2019-08-04 03:00:25 (22796): Guest Log: #                                                               #

2019-08-04 03:00:25 (22796): Guest Log: # O. Trott, A. J. Olson,                                        #

2019-08-04 03:00:25 (22796): Guest Log: # AutoDock Vina: improving the speed and accuracy of docking    #

2019-08-04 03:00:25 (22796): Guest Log: # with a new scoring function, efficient optimization and       #

2019-08-04 03:00:25 (22796): Guest Log: # multithreading, Journal of Computational Chemistry 31 (2010)  #

2019-08-04 03:00:25 (22796): Guest Log: # 455-461                                                       #

2019-08-04 03:00:25 (22796): Guest Log: #                                                               #

2019-08-04 03:00:25 (22796): Guest Log: # DOI 10.1002/jcc.21334                                         #

2019-08-04 03:00:25 (22796): Guest Log: #                                                               #

2019-08-04 03:00:25 (22796): Guest Log: # Please see http://vina.scripps.edu for more information.      #

2019-08-04 03:00:25 (22796): Guest Log: #################################################################

2019-08-04 03:00:25 (22796): Guest Log: Reading input ... done.

2019-08-04 03:00:25 (22796): Guest Log: Setting up the scoring function ... done.

2019-08-04 03:00:25 (22796): Guest Log: Analyzing the binding site ... done.

2019-08-04 03:00:25 (22796): Guest Log: Using random seed: -1862636246

2019-08-04 03:00:25 (22796): Guest Log: Performing search ... 

2019-08-04 03:00:25 (22796): Guest Log: 0%   10   20   30   40   50   60   70   80   90   100%

2019-08-04 03:00:25 (22796): Guest Log: |----|----|----|----|----|----|----|----|----|----|

2019-08-04 03:00:25 (22796): Starting VM. (boinc_2a68f7a46f47db4c, slot#8)
2019-08-04 03:00:48 (22796): Successfully started VM. (PID = '13640')
2019-08-04 03:00:48 (22796): Reporting VM Process ID to BOINC.
2019-08-04 03:00:53 (22796): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-04 03:01:03 (22796): Preference change detected
2019-08-04 03:01:03 (22796): Setting CPU throttle for VM. (100%)
2019-08-04 03:01:04 (22796): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-04 03:02:46 (22796): Guest Log: Prerun diagnostics...

2019-08-04 03:02:46 (22796): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2019-08-04 03:02:46 (22796): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        13 months ago       697 MB

2019-08-04 03:02:46 (22796): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-08-04 03:02:46 (22796): Guest Log: 705.2M	/var/lib/docker

2019-08-04 03:02:46 (22796): Guest Log:               total        used        free      shared  buff/cache   available

2019-08-04 03:02:46 (22796): Guest Log: Mem:           3219          52        2248         869         917        2251

2019-08-04 03:02:46 (22796): Guest Log: Swap:           753           0         753

2019-08-04 03:02:46 (22796): Guest Log: Prerun commands...

2019-08-04 03:02:46 (22796): Guest Log: Running... 

2019-08-04 03:02:51 (22796): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-08-04 03:02:51 (22796): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-08-04 03:02:51 (22796): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

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2019-08-04 03:02:52 (22796): Guest Log: #################################################################

2019-08-04 03:02:52 (22796): Guest Log: # If you used AutoDock Vina in your work, please cite:          #

2019-08-04 03:02:52 (22796): Guest Log: #                                                               #

2019-08-04 03:02:52 (22796): Guest Log: # O. Trott, A. J. Olson,                                        #

2019-08-04 03:02:52 (22796): Guest Log: # AutoDock Vina: improving the speed and accuracy of docking    #

2019-08-04 03:02:52 (22796): Guest Log: # with a new scoring function, efficient optimization and       #

2019-08-04 03:02:52 (22796): Guest Log: # multithreading, Journal of Computational Chemistry 31 (2010)  #

2019-08-04 03:02:52 (22796): Guest Log: # 455-461                                                       #

2019-08-04 03:02:52 (22796): Guest Log: #                                                               #

2019-08-04 03:02:52 (22796): Guest Log: # DOI 10.1002/jcc.21334                                         #

2019-08-04 03:02:52 (22796): Guest Log: #                                                               #

2019-08-04 03:02:52 (22796): Guest Log: # Please see http://vina.scripps.edu for more information.      #

2019-08-04 03:02:52 (22796): Guest Log: #################################################################

2019-08-04 03:02:52 (22796): Guest Log: Reading input ... done.

2019-08-04 03:02:52 (22796): Guest Log: Setting up the scoring function ... done.

2019-08-04 03:02:57 (22796): Guest Log: Analyzing the binding site ... done.

2019-08-04 03:02:57 (22796): Guest Log: Using random seed: -1862477355

2019-08-04 03:02:57 (22796): Guest Log: Performing search ... 

2019-08-04 03:02:57 (22796): Guest Log: 0%   10   20   30   40   50   60   70   80   90   100%

2019-08-04 03:02:57 (22796): Guest Log: |----|----|----|----|----|----|----|----|----|----|

2019-08-04 03:09:43 (22796): Guest Log: ***************************************************

2019-08-04 03:09:43 (22796): Guest Log: done.

2019-08-04 03:09:43 (22796): Guest Log: Refining results ... done.

2019-08-04 03:09:43 (22796): Guest Log: mode |   affinity | dist from best mode

2019-08-04 03:09:43 (22796): Guest Log:      | (kcal/mol) | rmsd l.b.| rmsd u.b.

2019-08-04 03:09:43 (22796): Guest Log: -----+------------+----------+----------

2019-08-04 03:09:43 (22796): Guest Log:    1        -12.3      0.000      0.000

2019-08-04 03:09:43 (22796): Guest Log:    2        -10.7      3.460     12.436

2019-08-04 03:09:43 (22796): Guest Log:    3        -10.5      2.560     12.592

2019-08-04 03:09:43 (22796): Guest Log:    4        -10.4      2.901     12.273

2019-08-04 03:09:43 (22796): Guest Log:    5        -10.3      3.325     13.806

2019-08-04 03:09:43 (22796): Guest Log:    6        -10.1      1.752     13.792

2019-08-04 03:09:43 (22796): Guest Log:    7         -9.8      1.942     13.910

2019-08-04 03:09:43 (22796): Guest Log:    8         -9.8      3.337     12.266

2019-08-04 03:09:43 (22796): Guest Log:    9         -9.3      1.824     14.012

2019-08-04 03:09:43 (22796): Guest Log: Writing output ... done.

2019-08-04 03:09:43 (22796): Guest Log: Postrun commands...

2019-08-04 03:09:43 (22796): Guest Log: boinc_app exited (0)

2019-08-04 03:09:43 (22796): Guest Log: Saving results...

2019-08-04 03:09:43 (22796): Guest Log: 1OPK.pdbqt

2019-08-04 03:09:43 (22796): Guest Log: ZINC00000567.pdbqt

2019-08-04 03:09:43 (22796): Guest Log: all.pdbqt

2019-08-04 03:09:43 (22796): Guest Log: ligand.pdbqt

2019-08-04 03:09:43 (22796): Guest Log: ligand_experiment.pdbqt

2019-08-04 03:09:43 (22796): Guest Log: protein.pdbqt

2019-08-04 03:09:43 (22796): VM Completion File Detected.
2019-08-04 03:09:43 (22796): Powering off VM.
2019-08-04 03:09:45 (22796): Successfully stopped VM.
2019-08-04 03:09:50 (22796): Deregistering VM. (boinc_2a68f7a46f47db4c, slot#8)
2019-08-04 03:09:50 (22796): Removing virtual disk drive(s) from VM.
2019-08-04 03:09:50 (22796): Removing network bandwidth throttle group from VM.
2019-08-04 03:09:50 (22796): Removing storage controller(s) from VM.
2019-08-04 03:09:52 (22796): Removing VM from VirtualBox.
03:09:57 (22796): called boinc_finish(0)

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