Task 240781

Name boinc2docker_20761_1563485923.641324_3
Workunit 105406
Created 19 Jul 2019, 13:23:05 UTC
Sent 19 Jul 2019, 13:31:28 UTC
Report deadline 26 Jul 2019, 13:31:28 UTC
Received 19 Jul 2019, 14:08:21 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 281
Run time 2 min 8 sec
CPU time 1 min 56 sec
Validate state Valid
Credit 4.53
Device peak FLOPS 15.45 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 231.61 MB
Peak swap size 6,480.45 MB
Peak disk usage 676.98 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-07-19 09:06:01 (28780): vboxwrapper (7.7.26197): starting
2019-07-19 09:06:01 (28780): Feature: Checkpoint interval offset (387 seconds)
2019-07-19 09:06:01 (28780): Detected: VirtualBox VboxManage Interface (Version: 6.0.8)
2019-07-19 09:06:01 (28780): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-07-19 09:06:01 (28780): Create VM. (boinc_847595d7a882b411, slot#0)
2019-07-19 09:06:01 (28780): Updating drive controller type and model for desired configuration.
2019-07-19 09:06:03 (28780): Setting Memory Size for VM. (6392MB)
2019-07-19 09:06:03 (28780): Setting CPU Count for VM. (4)
2019-07-19 09:06:03 (28780): Setting Chipset Options for VM.
2019-07-19 09:06:03 (28780): Setting Boot Options for VM.
2019-07-19 09:06:04 (28780): Setting Network Configuration for NAT.
2019-07-19 09:06:04 (28780): Enabling VM Network Access.
2019-07-19 09:06:04 (28780): Disabling USB Support for VM.
2019-07-19 09:06:04 (28780): Disabling COM Port Support for VM.
2019-07-19 09:06:04 (28780): Disabling LPT Port Support for VM.
2019-07-19 09:06:04 (28780): Disabling Audio Support for VM.
2019-07-19 09:06:04 (28780): Disabling Clipboard Support for VM.
2019-07-19 09:06:04 (28780): Disabling Drag and Drop Support for VM.
2019-07-19 09:06:04 (28780): Adding storage controller(s) to VM.
2019-07-19 09:06:04 (28780): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-07-19 09:06:05 (28780): Adding VirtualBox Guest Additions to VM.
2019-07-19 09:06:05 (28780): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-07-19 09:06:05 (28780): Enabling shared directory for VM.
2019-07-19 09:06:05 (28780): Starting VM. (boinc_847595d7a882b411, slot#0)
2019-07-19 09:06:07 (28780): Successfully started VM. (PID = '29290')
2019-07-19 09:06:07 (28780): Reporting VM Process ID to BOINC.
2019-07-19 09:06:07 (28780): Guest Log: BIOS: VirtualBox 6.0.8
2019-07-19 09:06:07 (28780): Guest Log: CPUID EDX: 0x178bfbff
2019-07-19 09:06:07 (28780): VM state change detected. (old = 'poweroff', new = 'running')
2019-07-19 09:06:07 (28780): Preference change detected
2019-07-19 09:06:07 (28780): Setting CPU throttle for VM. (100%)
2019-07-19 09:06:07 (28780): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 600 seconds))
2019-07-19 09:06:09 (28780): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-07-19 09:06:09 (28780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-07-19 09:06:09 (28780): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-07-19 09:06:09 (28780): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-07-19 09:06:09 (28780): Guest Log: BIOS: Booting from CD-ROM...
2019-07-19 09:06:12 (28780): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-07-19 09:06:12 (28780): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-07-19 09:06:25 (28780): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-07-19 09:06:25 (28780): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-07-19 09:06:25 (28780): Guest Log: net.ipv4.ip_forward = 1
2019-07-19 09:06:25 (28780): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-07-19 09:06:25 (28780): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-07-19 09:06:25 (28780): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-07-19 09:06:25 (28780): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-07-19 09:06:25 (28780): Guest Log: Segmentation fault
2019-07-19 09:06:25 (28780): Guest Log: automount ...
2019-07-19 09:06:25 (28780): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-07-19 09:06:25 (28780): Guest Log: automount over.
2019-07-19 09:06:25 (28780): Guest Log: Setting hostname to boot2docker Done.
2019-07-19 09:06:25 (28780): Guest Log: Fri Jul 19 09:06:23 UTC 2019 dhcp -------------------------------
2019-07-19 09:06:30 (28780): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1114)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00 (1354)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1355)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1356)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1357)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1358)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1359)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1360)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1361)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1362)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1363)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1364)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1365)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1366)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1367)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1368)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1369)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1370)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1371)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1372)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1373)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1374)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1375)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1376)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1377)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1378)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1379)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1380)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1381)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1382)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1383)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1384)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1385)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1386)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1387)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1388)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1389)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1390)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1391)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1392)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1394)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1395)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1396)
2019-07-19 09:06:30 (28780): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1397)
2019-07-19 09:06:31 (28780): Guest Log: Fri Jul 19 09:06:29 UTC 2019 dhcp -------------------------------
2019-07-19 09:06:31 (28780): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.000135 main     Log opened 2019-07-19T09:06:29.512385000Z
2019-07-19 09:06:31 (28780): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 201600:00:00.001009 main     OS Product: Linux
2019-07-19 09:06:31 (28780): Guest Log:  00:00:00.001091 main     OS Release: 4.1.19-boot2docker
2019-07-19 09:06:31 (28780): Guest Log: 7:300:00:00.001135 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 20168
2019-07-19 09:06:31 (28780): Guest Log: :55)00:00:00.001175 main     Executable: /sbin/VBoxService
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.001177 main     Process ID: 879
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.001178 main     Package type: LINUX_64BITS_GENERIC
2019-07-19 09:06:31 (28780): Guest Log: elease log
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.002400 main     5.0.16 r105871 started. Verbose level = 0
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.000135 main     Log opened 2019-07-19T09:06:29.512385000Z
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.001009 main     OS Product: Linux
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.001091 main     OS Release: 4.1.19-boot2docker
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.001135 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.001175 main     Executable: /sbin/VBoxService
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.001177 main     Process ID: 879
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.001178 main     Package 00:00:00.012396 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-07-19 09:06:31 (28780): Guest Log: pe: L00:00:00.012489 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installedI
2019-07-19 09:06:31 (28780): Guest Log: NUX_64BITS_GENERIC
2019-07-19 09:06:31 (28780): Guest Log: 00:00:00.002400 main     5.0.16 r105871 started. Verbose level = 0
2019-07-19 09:06:31 (28780): Guest Log: Mounting BOINC shared/...
2019-07-19 09:06:32 (28780): Guest Log: -------------------
2019-07-19 09:06:32 (28780): Guest Log: Fri Jul 19 14:06:31 UTC 2019
2019-07-19 09:06:36 (28780): Guest Log: 00:00:05.014334 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-07-19 09:06:37 (28780): Guest Log: Fri Jul 19 14:06:36 UTC 2019
2019-07-19 09:06:37 (28780): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-07-19 09:06:37 (28780): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-07-19 09:06:37 (28780): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-07-19 09:06:37 (28780): Guest Log:        valid_lft forever preferred_lft forever
2019-07-19 09:06:37 (28780): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-07-19 09:06:37 (28780): Guest Log:     link/ether 0a:97:d0:39:9f:3e brd ff:ff:ff:ff:ff:ff
2019-07-19 09:06:37 (28780): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-07-19 09:06:37 (28780): Guest Log:     link/ether 08:00:27:01:f5:23 brd ff:ff:ff:ff:ff:ff
2019-07-19 09:06:37 (28780): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-07-19 09:06:37 (28780): Guest Log:        valid_lft forever preferred_lft forever
2019-07-19 09:06:37 (28780): Guest Log: -------------------
2019-07-19 09:06:37 (28780): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-07-19 09:06:37 (28780): Guest Log: Waiting for Docker daemon to start...
2019-07-19 09:06:38 (28780): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-07-19 09:06:38 (28780): Guest Log: Running boinc_app...
2019-07-19 09:06:38 (28780): Guest Log: Importing Docker image from BOINC...
2019-07-19 09:06:41 (28780): Guest Log: 00:00:10.015544 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-07-19 09:07:49 (28780): Guest Log: Prerun diagnostics...
2019-07-19 09:07:49 (28780): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-07-19 09:07:49 (28780): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        12 months ago       1.473 GB
2019-07-19 09:07:49 (28780): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-07-19 09:07:50 (28780): Guest Log: 1.4G	/var/lib/docker
2019-07-19 09:07:50 (28780): Guest Log:               total        used        free      shared  buff/cache   available
2019-07-19 09:07:50 (28780): Guest Log: Mem:           6204          61        4450        1634        1692        4452
2019-07-19 09:07:50 (28780): Guest Log: Swap:          1497           0        1497
2019-07-19 09:07:50 (28780): Guest Log: Prerun commands...
2019-07-19 09:07:50 (28780): Guest Log: Running... 
2019-07-19 09:07:50 (28780): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-07-19 09:07:50 (28780): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-07-19 09:07:56 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-07-19 09:07:56 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-07-19 09:07:56 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-07-19 09:07:56 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-07-19 09:07:56 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0
2019-07-19 09:07:56 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:04 --:--:--     0
2019-07-19 09:07:56 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:05 --:--:--     0
2019-07-19 09:07:56 (28780): Guest Log: 100  762k  100  762k    0     0   120k      0  0:00:06  0:00:06 --:--:--  157k
2019-07-19 09:07:56 (28780): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-07-19 09:07:56 (28780): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-07-19 09:07:59 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-07-19 09:07:59 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-07-19 09:07:59 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-07-19 09:07:59 (28780): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-07-19 09:07:59 (28780): Guest Log: 100  1272  100  1272    0     0    458      0  0:00:02  0:00:02 --:--:--   458
2019-07-19 09:08:00 (28780): Guest Log: Postrun commands...
2019-07-19 09:08:00 (28780): Guest Log: boinc_app exited (0)
2019-07-19 09:08:00 (28780): Guest Log: Saving results...
2019-07-19 09:08:00 (28780): Guest Log: lammps_test.txt
2019-07-19 09:08:00 (28780): VM Completion File Detected.
2019-07-19 09:08:00 (28780): Powering off VM.
2019-07-19 09:08:01 (28780): Successfully stopped VM.
2019-07-19 09:08:01 (28780): Deregistering VM. (boinc_847595d7a882b411, slot#0)
2019-07-19 09:08:01 (28780): Removing network bandwidth throttle group from VM.
2019-07-19 09:08:01 (28780): Removing storage controller(s) from VM.
2019-07-19 09:08:01 (28780): Removing VM from VirtualBox.
2019-07-19 09:08:02 (28780): Removing virtual ISO 9660 disk from VirtualBox.
09:08:07 (28780): called boinc_finish(0)

</stderr_txt>
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