Task 240354

Name boinc2docker_12077_1563486733.811358_1
Workunit 107004
Created 18 Jul 2019, 21:52:14 UTC
Sent 18 Jul 2019, 22:05:07 UTC
Report deadline 25 Jul 2019, 22:05:07 UTC
Received 19 Jul 2019, 0:23:02 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 281
Run time 1 min 49 sec
CPU time 1 min 27 sec
Validate state Valid
Credit 3.93
Device peak FLOPS 15.45 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 130.89 MB
Peak swap size 6,476.45 MB
Peak disk usage 676.98 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-07-18 19:21:05 (43512): vboxwrapper (7.7.26197): starting
2019-07-18 19:21:05 (43512): Feature: Checkpoint interval offset (477 seconds)
2019-07-18 19:21:05 (43512): Detected: VirtualBox VboxManage Interface (Version: 6.0.8)
2019-07-18 19:21:05 (43512): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-07-18 19:21:05 (43512): Create VM. (boinc_648b0f7191282b52, slot#6)
2019-07-18 19:21:05 (43512): Updating drive controller type and model for desired configuration.
2019-07-18 19:21:06 (43512): Setting Memory Size for VM. (6392MB)
2019-07-18 19:21:06 (43512): Setting CPU Count for VM. (4)
2019-07-18 19:21:06 (43512): Setting Chipset Options for VM.
2019-07-18 19:21:06 (43512): Setting Boot Options for VM.
2019-07-18 19:21:06 (43512): Setting Network Configuration for NAT.
2019-07-18 19:21:06 (43512): Enabling VM Network Access.
2019-07-18 19:21:06 (43512): Disabling USB Support for VM.
2019-07-18 19:21:06 (43512): Disabling COM Port Support for VM.
2019-07-18 19:21:07 (43512): Disabling LPT Port Support for VM.
2019-07-18 19:21:07 (43512): Disabling Audio Support for VM.
2019-07-18 19:21:07 (43512): Disabling Clipboard Support for VM.
2019-07-18 19:21:07 (43512): Disabling Drag and Drop Support for VM.
2019-07-18 19:21:07 (43512): Adding storage controller(s) to VM.
2019-07-18 19:21:07 (43512): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-07-18 19:21:07 (43512): Adding VirtualBox Guest Additions to VM.
2019-07-18 19:21:07 (43512): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-07-18 19:21:07 (43512): Enabling shared directory for VM.
2019-07-18 19:21:08 (43512): Starting VM. (boinc_648b0f7191282b52, slot#6)
2019-07-18 19:21:09 (43512): Successfully started VM. (PID = '44036')
2019-07-18 19:21:09 (43512): Reporting VM Process ID to BOINC.
2019-07-18 19:21:09 (43512): Guest Log: BIOS: VirtualBox 6.0.8
2019-07-18 19:21:09 (43512): Guest Log: CPUID EDX: 0x178bfbff
2019-07-18 19:21:09 (43512): VM state change detected. (old = 'poweroff', new = 'running')
2019-07-18 19:21:10 (43512): Preference change detected
2019-07-18 19:21:10 (43512): Setting CPU throttle for VM. (100%)
2019-07-18 19:21:10 (43512): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 600 seconds))
2019-07-18 19:21:12 (43512): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-07-18 19:21:12 (43512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-07-18 19:21:12 (43512): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-07-18 19:21:12 (43512): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-07-18 19:21:12 (43512): Guest Log: BIOS: Booting from CD-ROM...
2019-07-18 19:21:15 (43512): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-07-18 19:21:15 (43512): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-07-18 19:21:24 (43512): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-07-18 19:21:24 (43512): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-07-18 19:21:24 (43512): Guest Log: net.ipv4.ip_forward = 1
2019-07-18 19:21:24 (43512): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-07-18 19:21:24 (43512): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-07-18 19:21:24 (43512): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-07-18 19:21:24 (43512): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-07-18 19:21:24 (43512): Guest Log: Segmentation fault
2019-07-18 19:21:24 (43512): Guest Log: automount ...
2019-07-18 19:21:26 (43512): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-07-18 19:21:26 (43512): Guest Log: automount over.
2019-07-18 19:21:26 (43512): Guest Log: Setting hostname to boot2docker Done.
2019-07-18 19:21:26 (43512): Guest Log: Thu Jul 18 19:21:24 UTC 2019 dhcp -------------------------------
2019-07-18 19:21:32 (43512): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-07-18 19:21:32 (43512): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1387)
2019-07-18 19:21:33 (43512): Guest Log: Thu Jul 18 19:21:30 UTC 2019 dhcp -------------------------------
2019-07-18 19:21:33 (43512): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.000119 main     Log opened 2019-07-18T19:21:30.405919000Z
2019-07-18 19:21:33 (43512): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.000119 main     Log opened 2019-07-18T19:21:30.4059190000:00:00.002857 main     OS Product: Linux
2019-07-18 19:21:33 (43512): Guest Log: Z
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.002918 main     OS Release: 4.1.19-boot2docker
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.002969 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.003017 main     Executable: /sbin/VBoxService
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.003019 main     Process ID: 906
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.003020 main     Package type: LINUX_64BITS_GENERIC
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.002857 main     OS Prod00:00:00.004132 main     5.0.16 r105871 started. Verbose level = 0
2019-07-18 19:21:33 (43512): Guest Log: ct: Linux
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.002918 main     OS Release: 4.1.19-boot2docker
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.002969 main     O00:00:00.006580 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: S
2019-07-18 19:21:33 (43512): Guest Log: Vers00:00:00.006643 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bis not installed
2019-07-18 19:21:33 (43512): Guest Log: n: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.003017 main     Executable: /sbin/VBoxService
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.003019 main     Process ID: 906
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.003020 main     Package type: LINUX_64BITS_GENERIC
2019-07-18 19:21:33 (43512): Guest Log: 00:00:00.004132 main     5.0.16 r105871 started. Verbose level = 0
2019-07-18 19:21:33 (43512): Guest Log: Mounting BOINC shared/...
2019-07-18 19:21:33 (43512): Guest Log: -------------------
2019-07-18 19:21:33 (43512): Guest Log: Fri Jul 19 00:21:33 UTC 2019
2019-07-18 19:21:38 (43512): Guest Log: 00:00:05.007819 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-07-18 19:21:38 (43512): Guest Log: Fri Jul 19 00:21:38 UTC 2019
2019-07-18 19:21:38 (43512): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-07-18 19:21:38 (43512): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-07-18 19:21:38 (43512): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-07-18 19:21:38 (43512): Guest Log:        valid_lft forever preferred_lft forever
2019-07-18 19:21:38 (43512): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-07-18 19:21:38 (43512): Guest Log:     link/ether 66:db:c4:62:94:6f brd ff:ff:ff:ff:ff:ff
2019-07-18 19:21:38 (43512): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-07-18 19:21:38 (43512): Guest Log:     link/ether 08:00:27:8f:94:0b brd ff:ff:ff:ff:ff:ff
2019-07-18 19:21:38 (43512): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-07-18 19:21:38 (43512): Guest Log:        valid_lft forever preferred_lft forever
2019-07-18 19:21:38 (43512): Guest Log: -------------------
2019-07-18 19:21:38 (43512): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-07-18 19:21:38 (43512): Guest Log: Waiting for Docker daemon to start...
2019-07-18 19:21:39 (43512): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-07-18 19:21:39 (43512): Guest Log: Running boinc_app...
2019-07-18 19:21:39 (43512): Guest Log: Importing Docker image from BOINC...
2019-07-18 19:21:43 (43512): Guest Log: 00:00:10.008339 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-07-18 19:22:39 (43512): Guest Log: Prerun diagnostics...
2019-07-18 19:22:39 (43512): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-07-18 19:22:39 (43512): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        12 months ago       1.473 GB
2019-07-18 19:22:39 (43512): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-07-18 19:22:39 (43512): Guest Log: 1.4G	/var/lib/docker
2019-07-18 19:22:39 (43512): Guest Log:               total        used        free      shared  buff/cache   available
2019-07-18 19:22:39 (43512): Guest Log: Mem:           6204          61        4450        1634        1692        4452
2019-07-18 19:22:39 (43512): Guest Log: Swap:          1499           0        1499
2019-07-18 19:22:39 (43512): Guest Log: Prerun commands...
2019-07-18 19:22:39 (43512): Guest Log: Running... 
2019-07-18 19:22:40 (43512): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-07-18 19:22:40 (43512): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-07-18 19:22:43 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-07-18 19:22:43 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-07-18 19:22:43 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-07-18 19:22:43 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-07-18 19:22:43 (43512): Guest Log: 100  762k  100  762k    0     0   227k      0  0:00:03  0:00:03 --:--:--  227k
2019-07-18 19:22:43 (43512): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-07-18 19:22:43 (43512): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-07-18 19:22:47 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-07-18 19:22:47 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-07-18 19:22:47 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-07-18 19:22:47 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-07-18 19:22:47 (43512): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0
2019-07-18 19:22:47 (43512): Guest Log: 100  1272  100  1272    0     0    350      0  0:00:03  0:00:03 --:--:--   350
2019-07-18 19:22:47 (43512): Guest Log: Postrun commands...
2019-07-18 19:22:47 (43512): Guest Log: boinc_app exited (0)
2019-07-18 19:22:47 (43512): Guest Log: Saving results...
2019-07-18 19:22:47 (43512): Guest Log: lammps_test.txt
2019-07-18 19:22:47 (43512): VM Completion File Detected.
2019-07-18 19:22:47 (43512): Powering off VM.
2019-07-18 19:22:47 (43512): Successfully stopped VM.
2019-07-18 19:22:47 (43512): Deregistering VM. (boinc_648b0f7191282b52, slot#6)
2019-07-18 19:22:47 (43512): Removing network bandwidth throttle group from VM.
2019-07-18 19:22:48 (43512): Removing storage controller(s) from VM.
2019-07-18 19:22:48 (43512): Removing VM from VirtualBox.
2019-07-18 19:22:48 (43512): Removing virtual ISO 9660 disk from VirtualBox.
19:22:53 (43512): called boinc_finish(0)

</stderr_txt>
]]>