Task 235531

Name boinc2docker_25590_1560466388.989862_3
Workunit 101273
Created 20 Jun 2019, 23:31:05 UTC
Sent 20 Jun 2019, 23:34:46 UTC
Report deadline 27 Jun 2019, 23:34:46 UTC
Received 21 Jun 2019, 0:08:21 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 67
Run time 1 min 31 sec
CPU time 59 sec
Validate state Valid
Credit 2.05
Device peak FLOPS 12.86 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 110.91 MB
Peak swap size 4,585.03 MB
Peak disk usage 340.78 MB

Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
2019-06-21 02:04:47 (25997): vboxwrapper (7.7.26197): starting
2019-06-21 02:04:48 (25997): Feature: Checkpoint interval offset (466 seconds)
2019-06-21 02:04:48 (25997): Detected: VirtualBox VboxManage Interface (Version: 5.2.18)
2019-06-21 02:04:48 (25997): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-06-21 02:04:48 (25997): Create VM. (boinc_dfac504ef6d47d5f, slot#0)
2019-06-21 02:04:48 (25997): Updating drive controller type and model for desired configuration.
2019-06-21 02:04:48 (25997): Setting Memory Size for VM. (3534MB)
2019-06-21 02:04:48 (25997): Setting CPU Count for VM. (4)
2019-06-21 02:04:48 (25997): Setting Chipset Options for VM.
2019-06-21 02:04:48 (25997): Setting Boot Options for VM.
2019-06-21 02:04:49 (25997): Setting Network Configuration for NAT.
2019-06-21 02:04:49 (25997): Enabling VM Network Access.
2019-06-21 02:04:49 (25997): Disabling USB Support for VM.
2019-06-21 02:04:49 (25997): Disabling COM Port Support for VM.
2019-06-21 02:04:49 (25997): Disabling LPT Port Support for VM.
2019-06-21 02:04:49 (25997): Disabling Audio Support for VM.
2019-06-21 02:04:49 (25997): Disabling Clipboard Support for VM.
2019-06-21 02:04:49 (25997): Disabling Drag and Drop Support for VM.
2019-06-21 02:04:50 (25997): Adding storage controller(s) to VM.
2019-06-21 02:04:50 (25997): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-06-21 02:04:50 (25997): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-06-21 02:04:50 (25997): Enabling shared directory for VM.
2019-06-21 02:04:50 (25997): Starting VM. (boinc_dfac504ef6d47d5f, slot#0)
2019-06-21 02:04:51 (25997): Successfully started VM. (PID = '26413')
2019-06-21 02:04:51 (25997): Reporting VM Process ID to BOINC.
2019-06-21 02:04:51 (25997): Guest Log: BIOS: VirtualBox 5.2.18
2019-06-21 02:04:51 (25997): Guest Log: CPUID EDX: 0x178bfbff
2019-06-21 02:04:52 (25997): VM state change detected. (old = 'poweroff', new = 'running')
2019-06-21 02:04:52 (25997): Preference change detected
2019-06-21 02:04:52 (25997): Setting CPU throttle for VM. (100%)
2019-06-21 02:04:52 (25997): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-06-21 02:04:54 (25997): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-06-21 02:04:54 (25997): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-06-21 02:04:54 (25997): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-06-21 02:04:54 (25997): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-06-21 02:04:54 (25997): Guest Log: BIOS: Booting from CD-ROM...
2019-06-21 02:04:55 (25997): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-06-21 02:04:55 (25997): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-06-21 02:05:05 (25997): Guest Log: net.ipv4.ip_forward = 1
2019-06-21 02:05:05 (25997): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-06-21 02:05:05 (25997): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-06-21 02:05:05 (25997): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-06-21 02:05:05 (25997): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-06-21 02:05:05 (25997): Guest Log: Segmentation fault
2019-06-21 02:05:05 (25997): Guest Log: automount ...
2019-06-21 02:05:05 (25997): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-06-21 02:05:05 (25997): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-06-21 02:05:07 (25997): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-06-21 02:05:07 (25997): Guest Log: automount over.
2019-06-21 02:05:07 (25997): Guest Log: Setting hostname to boot2docker Done.
2019-06-21 02:05:07 (25997): Guest Log: Fri Jun 21 02:05:04 UTC 2019 dhcp -------------------------------
2019-06-21 02:05:11 (25997): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-06-21 02:05:11 (25997): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1348)
2019-06-21 02:05:12 (25997): Guest Log: Fri Jun 21 02:05:10 UTC 2019 dhcp -------------------------------
2019-06-21 02:05:12 (25997): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.000096 main     Log opened 2019-06-21T02:05:10.536036000Z
2019-06-21 02:05:12 (25997): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001307 main     OS Product: Linux
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001395 main     OS Release: 4.1.19-boot2docker
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001439 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001496 main     Executable: /sbin/VBoxService
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001498 main     Process ID: 802
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001499 main     Package type: LINUX_64BITS_GENERIC
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.000096 main     Log opened 2019-06-21T02:05:10.536036000Z
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.002919 main     5.0.16 r105871 started. Verbose level = 0
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001307 main     OS Product: Linux
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001395 main     OS Release: 4.1.19-boot2docker
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.005764 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.005844 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001439 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001496 main     Executable: /sbin/VBoxService
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001498 main     Process ID: 802
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.001499 main     Package type: LINUX_64BITS_GENERIC
2019-06-21 02:05:12 (25997): Guest Log: 00:00:00.002919 main     5.0.16 r105871 started. Verbose level = 0
2019-06-21 02:05:12 (25997): Guest Log: Mounting BOINC shared/...
2019-06-21 02:05:13 (25997): Guest Log: -------------------
2019-06-21 02:05:13 (25997): Guest Log: Fri Jun 21 00:05:13 UTC 2019
2019-06-21 02:05:17 (25997): Guest Log: 00:00:05.007344 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-06-21 02:05:18 (25997): Guest Log: Fri Jun 21 00:05:18 UTC 2019
2019-06-21 02:05:18 (25997): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-06-21 02:05:18 (25997): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-06-21 02:05:18 (25997): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-06-21 02:05:18 (25997): Guest Log:        valid_lft forever preferred_lft forever
2019-06-21 02:05:18 (25997): Guest Log:     inet6 ::1/128 scope host 
2019-06-21 02:05:18 (25997): Guest Log:        valid_lft forever preferred_lft forever
2019-06-21 02:05:18 (25997): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-06-21 02:05:18 (25997): Guest Log:     link/ether 52:ea:63:d6:20:61 brd ff:ff:ff:ff:ff:ff
2019-06-21 02:05:18 (25997): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-06-21 02:05:18 (25997): Guest Log:     link/ether 08:00:27:b0:75:5e brd ff:ff:ff:ff:ff:ff
2019-06-21 02:05:18 (25997): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-06-21 02:05:18 (25997): Guest Log:        valid_lft forever preferred_lft forever
2019-06-21 02:05:18 (25997): Guest Log:     inet6 fe80::a00:27ff:feb0:755e/64 scope link 
2019-06-21 02:05:18 (25997): Guest Log:        valid_lft forever preferred_lft forever
2019-06-21 02:05:18 (25997): Guest Log: -------------------
2019-06-21 02:05:18 (25997): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-06-21 02:05:19 (25997): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-06-21 02:05:19 (25997): Guest Log: Running boinc_app...
2019-06-21 02:05:19 (25997): Guest Log: Importing Docker image from BOINC...
2019-06-21 02:05:22 (25997): Guest Log: 00:00:10.008413 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-06-21 02:05:49 (25997): Guest Log: Prerun diagnostics...
2019-06-21 02:05:49 (25997): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-06-21 02:05:49 (25997): Guest Log: carlosred/bowtie    built               4beacb78841d        12 months ago       758.7 MB
2019-06-21 02:05:49 (25997): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-06-21 02:05:49 (25997): Guest Log: 753.8M	/var/lib/docker
2019-06-21 02:05:49 (25997): Guest Log:               total        used        free      shared  buff/cache   available
2019-06-21 02:05:49 (25997): Guest Log: Mem:           3461          49        2452         917         958        2452
2019-06-21 02:05:49 (25997): Guest Log: Swap:           813           0         813
2019-06-21 02:05:49 (25997): Guest Log: Prerun commands...
2019-06-21 02:05:49 (25997): Guest Log: Running... 
2019-06-21 02:05:50 (25997): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-06-21 02:05:50 (25997): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-06-21 02:06:11 (25997): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-06-21 02:06:11 (25997): Guest Log:   0 14.4M    0 14257    0     0  20264      0  0:12:26 --:--:--  0:12:26 20251
2019-06-21 02:06:11 (25997): Guest Log:   3 14.4M    3  553k    0     0   330k      0  0:00:44  0:00:01  0:00:43  330k
2019-06-21 02:06:11 (25997): Guest Log:   8 14.4M    8 1296k    0     0   484k      0  0:00:30  0:00:02  0:00:28  483k
2019-06-21 02:06:11 (25997): Guest Log:  13 14.4M   13 2037k    0     0   553k      0  0:00:26  0:00:03  0:00:23  553k
2019-06-21 02:06:11 (25997): Guest Log:  18 14.4M   18 2770k    0     0   592k      0  0:00:24  0:00:04  0:00:20  592k
2019-06-21 02:06:11 (25997): Guest Log:  23 14.4M   23 3502k    0     0   616k      0  0:00:23  0:00:05  0:00:18  701k
2019-06-21 02:06:11 (25997): Guest Log:  28 14.4M   28 4243k    0     0   635k      0  0:00:23  0:00:06  0:00:17  738k
2019-06-21 02:06:11 (25997): Guest Log:  33 14.4M   33 4985k    0     0   649k      0  0:00:22  0:00:07  0:00:15  737k
2019-06-21 02:06:11 (25997): Guest Log:  38 14.4M   38 5727k    0     0   659k      0  0:00:22  0:00:08  0:00:14  738k
2019-06-21 02:06:11 (25997): Guest Log:  43 14.4M   43 6461k    0     0   667k      0  0:00:22  0:00:09  0:00:13  738k
2019-06-21 02:06:11 (25997): Guest Log:  48 14.4M   48 7201k    0     0   674k      0  0:00:21  0:00:10  0:00:11  739k
2019-06-21 02:06:11 (25997): Guest Log:  53 14.4M   53 7942k    0     0   680k      0  0:00:21  0:00:11  0:00:10  739k
2019-06-21 02:06:11 (25997): Guest Log:  58 14.4M   58 8683k    0     0   684k      0  0:00:21  0:00:12  0:00:09  739k
2019-06-21 02:06:11 (25997): Guest Log:  63 14.4M   63 9423k    0     0   688k      0  0:00:21  0:00:13  0:00:08  739k
2019-06-21 02:06:11 (25997): Guest Log:  68 14.4M   68  9.9M    0     0   692k      0  0:00:21  0:00:14  0:00:07  740k
2019-06-21 02:06:11 (25997): Guest Log:  73 14.4M   73 10.6M    0     0   695k      0  0:00:21  0:00:15  0:00:06  740k
2019-06-21 02:06:11 (25997): Guest Log:  78 14.4M   78 11.3M    0     0   698k      0  0:00:21  0:00:16  0:00:05  740k
2019-06-21 02:06:11 (25997): Guest Log:  83 14.4M   83 12.0M    0     0   700k      0  0:00:21  0:00:17  0:00:04  740k
2019-06-21 02:06:11 (25997): Guest Log:  88 14.4M   88 12.8M    0     0   702k      0  0:00:21  0:00:18  0:00:03  741k
2019-06-21 02:06:11 (25997): Guest Log:  93 14.4M   93 13.5M    0     0   704k      0  0:00:20  0:00:19  0:00:01  741k
2019-06-21 02:06:11 (25997): Guest Log:  98 14.4M   98 14.2M    0     0   706k      0  0:00:20  0:00:20 --:--:--  741k
2019-06-21 02:06:11 (25997): Guest Log: 100 14.4M  100 14.4M    0     0   706k      0  0:00:20  0:00:20 --:--:--  741k
2019-06-21 02:06:11 (25997): Guest Log: Archive:  s_cerevisiae.ebwt.zip
2019-06-21 02:06:11 (25997): Guest Log:   inflating: s_cerevisiae.1.ebwt     
2019-06-21 02:06:11 (25997): Guest Log:   inflating: s_cerevisiae.2.ebwt     
2019-06-21 02:06:11 (25997): Guest Log:   inflating: s_cerevisiae.3.ebwt     
2019-06-21 02:06:11 (25997): Guest Log:   inflating: s_cerevisiae.4.ebwt     
2019-06-21 02:06:11 (25997): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  
2019-06-21 02:06:11 (25997): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  
2019-06-21 02:06:11 (25997): Guest Log:   inflating: make_s_cerevisiae.sh    
2019-06-21 02:06:11 (25997): Guest Log: # reads processed: 1
2019-06-21 02:06:11 (25997): Guest Log: # reads with at least one reported alignment: 1 (100.00%)
2019-06-21 02:06:11 (25997): Guest Log: # reads that failed to align: 0 (0.00%)
2019-06-21 02:06:11 (25997): Guest Log: Reported 1 alignments
2019-06-21 02:06:12 (25997): Guest Log: Postrun commands...
2019-06-21 02:06:12 (25997): Guest Log: boinc_app exited (0)
2019-06-21 02:06:12 (25997): Guest Log: Saving results...
2019-06-21 02:06:12 (25997): Guest Log: make_s_cerevisiae.sh
2019-06-21 02:06:12 (25997): Guest Log: res_bowtie.txt
2019-06-21 02:06:12 (25997): VM Completion File Detected.
2019-06-21 02:06:12 (25997): Powering off VM.
2019-06-21 02:06:12 (25997): Successfully stopped VM.
2019-06-21 02:06:12 (25997): Deregistering VM. (boinc_dfac504ef6d47d5f, slot#0)
2019-06-21 02:06:12 (25997): Removing network bandwidth throttle group from VM.
2019-06-21 02:06:13 (25997): Removing storage controller(s) from VM.
2019-06-21 02:06:13 (25997): Removing VM from VirtualBox.
2019-06-21 02:06:13 (25997): Removing virtual ISO 9660 disk from VirtualBox.
02:06:18 (25997): called boinc_finish(0)

</stderr_txt>
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