Task 231389

Name boinc2docker_10362_1560964888.302225_1
Workunit 103133
Created 19 Jun 2019, 17:21:32 UTC
Sent 19 Jun 2019, 17:23:08 UTC
Report deadline 26 Jun 2019, 17:23:08 UTC
Received 20 Jun 2019, 1:03:48 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1540
Run time 4 min 47 sec
CPU time 2 min 43 sec
Validate state Valid
Credit 5.57
Device peak FLOPS 12.84 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 110.33 MB
Peak swap size 141.79 MB
Peak disk usage 677.07 MB

Stderr output

<core_client_version>7.8.3</core_client_version>
<![CDATA[
<stderr_txt>
2019-06-19 17:58:43 (15172): vboxwrapper (7.9.26200): starting
2019-06-19 17:58:43 (15172): Feature: Checkpoint interval offset (307 seconds)
2019-06-19 17:58:43 (15172): Detected: VirtualBox COM Interface (Version: 5.2.28)
2019-06-19 17:58:43 (15172): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-06-19 17:58:43 (15172): Create VM. (boinc_b0b500dc9719183d, slot#8)
2019-06-19 17:58:43 (15172): Updating drive controller type and model for desired configuration.
2019-06-19 17:58:43 (15172): Setting Memory Size for VM. (6392MB)
2019-06-19 17:58:43 (15172): Setting CPU Count for VM. (4)
2019-06-19 17:58:43 (15172): Setting Chipset Options for VM.
2019-06-19 17:58:43 (15172): Setting Boot Options for VM.
2019-06-19 17:58:43 (15172): Enabling VM Network Access.
2019-06-19 17:58:43 (15172): Setting Network Configuration for NAT.
2019-06-19 17:58:43 (15172): Disabling USB Support for VM.
2019-06-19 17:58:43 (15172): Disabling COM Port Support for VM.
2019-06-19 17:58:43 (15172): Disabling LPT Port Support for VM.
2019-06-19 17:58:43 (15172): Disabling Audio Support for VM.
2019-06-19 17:58:43 (15172): Disabling Clipboard Support for VM.
2019-06-19 17:58:43 (15172): Disabling Drag and Drop Support for VM.
2019-06-19 17:58:43 (15172): Adding storage controller(s) to VM.
2019-06-19 17:58:43 (15172): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-06-19 17:58:43 (15172): Adding VirtualBox Guest Additions to VM.
2019-06-19 17:58:43 (15172): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-06-19 17:58:43 (15172): Enabling shared directory for VM.
2019-06-19 17:58:43 (15172): Starting VM. (boinc_b0b500dc9719183d, slot#8)
2019-06-19 17:58:54 (15172): Guest Log: BIOS: VirtualBox 5.2.28

2019-06-19 17:58:54 (15172): Guest Log: CPUID EDX: 0x178bfbff

2019-06-19 17:58:54 (15172): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-06-19 17:58:54 (15172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-06-19 17:58:54 (15172): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-06-19 17:58:54 (15172): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-06-19 17:58:54 (15172): Guest Log: BIOS: Booting from CD-ROM...

2019-06-19 17:58:54 (15172): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-06-19 17:58:54 (15172): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-06-19 17:58:54 (15172): Successfully started VM. (PID = '14668')
2019-06-19 17:58:54 (15172): Reporting VM Process ID to BOINC.
2019-06-19 17:58:59 (15172): VM state change detected. (old = 'poweroff', new = 'running')
2019-06-19 17:59:09 (15172): Preference change detected
2019-06-19 17:59:09 (15172): Setting CPU throttle for VM. (100%)
2019-06-19 17:59:09 (15172): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-06-19 17:59:29 (15172): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-06-19 17:59:29 (15172): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-06-19 17:59:29 (15172): Guest Log: net.ipv4.ip_forward = 1

2019-06-19 17:59:29 (15172): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-06-19 17:59:29 (15172): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-06-19 17:59:29 (15172): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-06-19 17:59:29 (15172): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-06-19 17:59:29 (15172): Guest Log: Segmentation fault

2019-06-19 17:59:29 (15172): Guest Log: automount ...

2019-06-19 17:59:29 (15172): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-06-19 17:59:29 (15172): Guest Log: automount over.

2019-06-19 17:59:29 (15172): Guest Log: Setting hostname to boot2docker Done.

2019-06-19 17:59:29 (15172): Guest Log: Wed Jun 19 17:59:27 UTC 2019 dhcp -------------------------------

2019-06-19 17:59:34 (15172): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1114)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00 (1354)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1355)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1356)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1357)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1358)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1359)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1360)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1361)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1362)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1363)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1364)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1365)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1366)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1367)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1368)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1369)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1370)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1371)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event5 (1372)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1373)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1374)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1375)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1376)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1377)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1378)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1379)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1380)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1381)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1382)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1383)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1384)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1385)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1386)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1387)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1388)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1389)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1390)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1391)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1392)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1393)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1394)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1395)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1396)

2019-06-19 17:59:34 (15172): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1397)

2019-06-19 17:59:39 (15172): Guest Log: Wed Jun 19 17:59:33 UTC 2019 dhcp -------------------------------

2019-06-19 17:59:39 (15172): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-06-19 17:59:39 (15172): Guest Log: 00:00:00.000230 main     Log opened 2019-06-19T17:59:33.500634000Z

2019-06-19 17:59:39 (15172): Guest Log: 00:00:00.000526 main     OS Product: Linux

2019-06-19 17:59:39 (15172): Guest Log: 00:00:00.000601 main     OS Release: 4.1.19-boot2docker

2019-06-19 17:59:39 (15172): Guest Log: V00:00:00.000704 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016B

2019-06-19 17:59:39 (15172): Guest Log: xS00:00:00.000775 main     Executable: /sbin/VBoxService

2019-06-19 17:59:39 (15172): Guest Log: 00:00:00.000r

2019-06-19 17:59:39 (15172): Guest Log: 00:00:00.000779 main     Package type: LINUX_64BITS_GENERIC

2019-06-19 17:59:40 (15172): Guest Log: ce 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.000230 main     Log opened 2019-06-19T17:59:33.500634000Z

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.000526 main     OS Product: Linux

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.000601 main     OS Release: 4.1.19-boot2docker

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.000704 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.000775 main     Executable: /sbin/VBoxService

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.000777 main     Process ID: 854

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.000779 main     Package type: LINUX_64BITS_GENERIC

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.030819 main     5.0.16 r105871 started. Verbose level = 0

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.030819 main     5.0.16 r105871 started. Verbose level = 0

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.060705 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-06-19 17:59:40 (15172): Guest Log: 00:00:00.060818 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-06-19 17:59:40 (15172): Guest Log: Mounting BOINC shared/...

2019-06-19 17:59:40 (15172): Guest Log: -------------------

2019-06-19 17:59:40 (15172): Guest Log: Thu Jun 20 00:59:36 UTC 2019

2019-06-19 17:59:45 (15172): Guest Log: 00:00:05.070956 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-06-19 17:59:45 (15172): Guest Log: Thu Jun 20 00:59:44 UTC 2019

2019-06-19 17:59:45 (15172): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-06-19 17:59:45 (15172): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-06-19 17:59:45 (15172): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-06-19 17:59:45 (15172): Guest Log:        valid_lft forever preferred_lft forever

2019-06-19 17:59:45 (15172): Guest Log:     inet6 ::1/128 scope host 

2019-06-19 17:59:45 (15172): Guest Log:        valid_lft forever preferred_lft forever

2019-06-19 17:59:45 (15172): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-06-19 17:59:45 (15172): Guest Log:     link/ether b6:d5:f8:c9:11:ec brd ff:ff:ff:ff:ff:ff

2019-06-19 17:59:45 (15172): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-06-19 17:59:45 (15172): Guest Log:     link/ether 08:00:27:de:29:f2 brd ff:ff:ff:ff:ff:ff

2019-06-19 17:59:45 (15172): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-06-19 17:59:45 (15172): Guest Log:        valid_lft forever preferred_lft forever

2019-06-19 17:59:45 (15172): Guest Log:     inet6 fe80::a00:27ff:fede:29f2/64 scope link 

2019-06-19 17:59:45 (15172): Guest Log:        valid_lft forever preferred_lft forever

2019-06-19 17:59:45 (15172): Guest Log: -------------------

2019-06-19 17:59:45 (15172): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-06-19 17:59:45 (15172): Guest Log: Waiting for Docker daemon to start...

2019-06-19 17:59:45 (15172): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-06-19 17:59:45 (15172): Guest Log: Running boinc_app...

2019-06-19 17:59:45 (15172): Guest Log: Importing Docker image from BOINC...

2019-06-19 17:59:50 (15172): Guest Log: 00:00:10.072546 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-06-19 18:03:11 (15172): Guest Log: Prerun diagnostics...

2019-06-19 18:03:11 (15172): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE

2019-06-19 18:03:11 (15172): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        11 months ago       1.473 GB

2019-06-19 18:03:11 (15172): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-06-19 18:03:11 (15172): Guest Log: 1.4G	/var/lib/docker

2019-06-19 18:03:11 (15172): Guest Log:               total        used        free      shared  buff/cache   available

2019-06-19 18:03:11 (15172): Guest Log: Mem:           6204          64        4448        1634        1692        4450

2019-06-19 18:03:11 (15172): Guest Log: Swap:          1499           0        1499

2019-06-19 18:03:11 (15172): Guest Log: Prerun commands...

2019-06-19 18:03:11 (15172): Guest Log: Running... 

2019-06-19 18:03:16 (15172): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-06-19 18:03:16 (15172): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-06-19 18:03:16 (15172): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-06-19 18:03:16 (15172): Guest Log:   3  762k    3 29383    0     0  73763      0  0:00:10 --:--:--  0:00:10 73641

2019-06-19 18:03:16 (15172): Guest Log: 100  762k  100  762k    0     0   555k      0  0:00:01  0:00:01 --:--:--  555k

2019-06-19 18:03:16 (15172): Guest Log: 100  762k  100  762k    0     0   555k      0  0:00:01  0:00:01 --:--:--  555k

2019-06-19 18:03:16 (15172): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-06-19 18:03:16 (15172): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-06-19 18:03:16 (15172): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-06-19 18:03:16 (15172): Guest Log: 100  1272  100  1272    0     0   5592      0 --:--:-- --:--:-- --:--:--  5603

2019-06-19 18:03:16 (15172): Guest Log: Postrun commands...

2019-06-19 18:03:16 (15172): Guest Log: boinc_app exited (0)

2019-06-19 18:03:16 (15172): Guest Log: Saving results...

2019-06-19 18:03:16 (15172): Guest Log: lammps_test.txt

2019-06-19 18:03:16 (15172): VM Completion File Detected.
2019-06-19 18:03:16 (15172): Powering off VM.
2019-06-19 18:03:18 (15172): Successfully stopped VM.
2019-06-19 18:03:23 (15172): Deregistering VM. (boinc_b0b500dc9719183d, slot#8)
2019-06-19 18:03:23 (15172): Removing virtual disk drive(s) from VM.
2019-06-19 18:03:23 (15172): Removing network bandwidth throttle group from VM.
2019-06-19 18:03:23 (15172): Removing storage controller(s) from VM.
2019-06-19 18:03:23 (15172): Removing VM from VirtualBox.
18:03:28 (15172): called boinc_finish(0)

</stderr_txt>
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