Task 230011

Name boinc2docker_2968_1560467180.551550_0
Workunit 102474
Created 13 Jun 2019, 23:06:24 UTC
Sent 14 Jun 2019, 0:42:00 UTC
Report deadline 21 Jun 2019, 0:42:00 UTC
Received 14 Jun 2019, 1:48:34 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 61
Run time 1 min 57 sec
CPU time 53 sec
Validate state Valid
Credit 5.78
Device peak FLOPS 20.16 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 97.03 MB
Peak swap size 106.79 MB
Peak disk usage 340.69 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-06-14 02:45:52 (580): vboxwrapper (7.9.26200): starting
2019-06-14 02:45:53 (580): Feature: Checkpoint interval offset (35 seconds)
2019-06-14 02:45:53 (580): Detected: VirtualBox VboxManage Interface (Version: 6.0.8)
2019-06-14 02:45:53 (580): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-06-14 02:45:54 (580): Create VM. (boinc_44bdeb9c38e1cda9, slot#2)
2019-06-14 02:45:54 (580): Updating drive controller type and model for desired configuration.
2019-06-14 02:45:54 (580): Setting Memory Size for VM. (3534MB)
2019-06-14 02:45:55 (580): Setting CPU Count for VM. (4)
2019-06-14 02:45:55 (580): Setting Chipset Options for VM.
2019-06-14 02:45:55 (580): Setting Boot Options for VM.
2019-06-14 02:45:55 (580): Setting Network Configuration for NAT.
2019-06-14 02:45:56 (580): Enabling VM Network Access.
2019-06-14 02:45:56 (580): Disabling USB Support for VM.
2019-06-14 02:45:56 (580): Disabling COM Port Support for VM.
2019-06-14 02:45:56 (580): Disabling LPT Port Support for VM.
2019-06-14 02:45:57 (580): Disabling Audio Support for VM.
2019-06-14 02:45:57 (580): Disabling Clipboard Support for VM.
2019-06-14 02:45:57 (580): Disabling Drag and Drop Support for VM.
2019-06-14 02:45:58 (580): Adding storage controller(s) to VM.
2019-06-14 02:45:58 (580): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-06-14 02:45:58 (580): Adding VirtualBox Guest Additions to VM.
2019-06-14 02:45:58 (580): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-06-14 02:45:59 (580): Enabling shared directory for VM.
2019-06-14 02:45:59 (580): Starting VM using VboxManage interface. (boinc_44bdeb9c38e1cda9, slot#2)
2019-06-14 02:46:05 (580): Successfully started VM. (PID = '12828')
2019-06-14 02:46:05 (580): Reporting VM Process ID to BOINC.
2019-06-14 02:46:10 (580): Guest Log: BIOS: VirtualBox 6.0.8

2019-06-14 02:46:10 (580): Guest Log: CPUID EDX: 0x178bfbff

2019-06-14 02:46:10 (580): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-06-14 02:46:10 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-06-14 02:46:10 (580): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-06-14 02:46:10 (580): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-06-14 02:46:10 (580): Guest Log: BIOS: Booting from CD-ROM...

2019-06-14 02:46:10 (580): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-06-14 02:46:10 (580): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-06-14 02:46:10 (580): VM state change detected. (old = 'poweroff', new = 'running')
2019-06-14 02:46:20 (580): Preference change detected
2019-06-14 02:46:20 (580): Setting CPU throttle for VM. (100%)
2019-06-14 02:46:21 (580): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 600 seconds))
2019-06-14 02:46:31 (580): Guest Log: net.ipv4.ip_forward = 1

2019-06-14 02:46:31 (580): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-06-14 02:46:31 (580): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-06-14 02:46:31 (580): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-06-14 02:46:31 (580): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-06-14 02:46:31 (580): Guest Log: Segmentation fault

2019-06-14 02:46:31 (580): Guest Log: automount ...

2019-06-14 02:46:31 (580): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-06-14 02:46:31 (580): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-06-14 02:46:31 (580): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-06-14 02:46:31 (580): Guest Log: automount over.

2019-06-14 02:46:31 (580): Guest Log: Setting hostname to boot2docker Done.

2019-06-14 02:46:31 (580): Guest Log: Fri Jun 14 02:46:27 UTC 2019 dhcp -------------------------------

2019-06-14 02:46:36 (580): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1100)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00 (1331)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1332)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1333)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1334)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1335)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1336)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1337)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1338)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1339)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1340)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1341)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1342)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1343)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1344)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1345)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1346)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1347)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1348)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1349)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1350)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1351)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1352)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1353)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1354)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1355)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1356)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1357)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1358)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1359)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1360)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1361)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1362)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1363)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1364)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1365)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1366)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1367)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1368)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1369)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1370)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1371)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1372)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1373)

2019-06-14 02:46:36 (580): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1374)

2019-06-14 02:46:36 (580): Guest Log: Fri Jun 14 02:46:33 UTC 2019 dhcp -------------------------------

2019-06-14 02:46:36 (580): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.000105 main     Log opened 2019-06-14T02:46:33.528799000Z

2019-06-14 02:46:36 (580): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-06-14 02:46:36 (580): Guest Log: 00:00:0000:00:00.002959 main     OS Product: Linux

2019-06-14 02:46:36 (580): Guest Log: 00010500:00: 

2019-06-14 02:46:36 (580): Guest Log: ain00:00:00.003105 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016 

2019-06-14 02:46:36 (580): Guest Log:     00:00:00.003146 main     Executable: /sbin/VBoxService

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.003148 main     Process ID: 897

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.003150 main     Package type: LINUX_64BITS_GENERIC

2019-06-14 02:46:36 (580): Guest Log:  opened 2019-06-14T02:46:33.5287990000:00:00.004042 main     5.0.16 r105871 started. Verbose level = 0

2019-06-14 02:46:36 (580): Guest Log: Z

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.002959 main     OS Product: Linux

2019-06-14 02:46:36 (580): Guest Log: 00:00:00:00:00.007802 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-06-14 02:46:36 (580): Guest Log: 0.0000:00:00.007858 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-06-14 02:46:36 (580): Guest Log: 055 main     OS Release: 4.1.19-boot2docker

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.003105 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.003146 main     Executable: /sbin/VBoxService

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.003148 main     Process ID: 897

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.003150 main     Package type: LINUX_64BITS_GENERIC

2019-06-14 02:46:36 (580): Guest Log: 00:00:00.004042 main     5.0.16 r105871 started. Verbose level = 0

2019-06-14 02:46:36 (580): Guest Log: Mounting BOINC shared/...

2019-06-14 02:46:36 (580): Guest Log: -------------------

2019-06-14 02:46:36 (580): Guest Log: Fri Jun 14 00:46:35 UTC 2019

2019-06-14 02:46:42 (580): Guest Log: 00:00:05.017614 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-06-14 02:46:42 (580): Guest Log: Fri Jun 14 00:46:42 UTC 2019

2019-06-14 02:46:42 (580): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-06-14 02:46:42 (580): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-06-14 02:46:42 (580): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-06-14 02:46:42 (580): Guest Log:        valid_lft forever preferred_lft forever

2019-06-14 02:46:42 (580): Guest Log:     inet6 ::1/128 scope host 

2019-06-14 02:46:42 (580): Guest Log:        valid_lft forever preferred_lft forever

2019-06-14 02:46:42 (580): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-06-14 02:46:42 (580): Guest Log:     link/ether de:ec:74:e4:02:8c brd ff:ff:ff:ff:ff:ff

2019-06-14 02:46:42 (580): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-06-14 02:46:42 (580): Guest Log:     link/ether 08:00:27:03:d4:4a brd ff:ff:ff:ff:ff:ff

2019-06-14 02:46:42 (580): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-06-14 02:46:42 (580): Guest Log:        valid_lft forever preferred_lft forever

2019-06-14 02:46:42 (580): Guest Log:     inet6 fe80::a00:27ff:fe03:d44a/64 scope link 

2019-06-14 02:46:42 (580): Guest Log:        valid_lft forever preferred_lft forever

2019-06-14 02:46:42 (580): Guest Log: -------------------

2019-06-14 02:46:42 (580): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-06-14 02:46:42 (580): Guest Log: Waiting for Docker daemon to start...

2019-06-14 02:46:42 (580): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-06-14 02:46:42 (580): Guest Log: Running boinc_app...

2019-06-14 02:46:42 (580): Guest Log: Importing Docker image from BOINC...

2019-06-14 02:46:47 (580): Guest Log: 00:00:10.018258 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-06-14 02:47:34 (580): Guest Log: Prerun diagnostics...

2019-06-14 02:47:34 (580): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-06-14 02:47:34 (580): Guest Log: carlosred/bowtie    built               4beacb78841d        12 months ago       758.7 MB

2019-06-14 02:47:34 (580): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-06-14 02:47:34 (580): Guest Log: 753.8M	/var/lib/docker

2019-06-14 02:47:34 (580): Guest Log:               total        used        free      shared  buff/cache   available

2019-06-14 02:47:34 (580): Guest Log: Mem:           3461          54        2447         918         959        2447

2019-06-14 02:47:34 (580): Guest Log: Swap:           813           0         813

2019-06-14 02:47:34 (580): Guest Log: Prerun commands...

2019-06-14 02:47:34 (580): Guest Log: Running... 

2019-06-14 02:47:34 (580): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-06-14 02:47:34 (580): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-06-14 02:47:40 (580): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-06-14 02:47:40 (580): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0

2019-06-14 02:47:40 (580): Guest Log:   2 14.4M    2  341k    0     0   180k      0  0:01:22  0:00:01  0:01:21  180k

2019-06-14 02:47:40 (580): Guest Log:  20 14.4M   20 2962k    0     0  1040k      0  0:00:14  0:00:02  0:00:12 1040k

2019-06-14 02:47:40 (580): Guest Log:  37 14.4M   37 5591k    0     0  1457k      0  0:00:10  0:00:03  0:00:07 1456k

2019-06-14 02:47:40 (580): Guest Log:  57 14.4M   57 8446k    0     0  1738k      0  0:00:08  0:00:04  0:00:04 1737k

2019-06-14 02:47:40 (580): Guest Log:  77 14.4M   77 11.2M    0     0  1972k      0  0:00:07  0:00:05  0:00:02 2434k

2019-06-14 02:47:40 (580): Guest Log:  92 14.4M   92 13.3M    0     0  2003k      0  0:00:07  0:00:06  0:00:01 2705k

2019-06-14 02:47:40 (580): Guest Log: 100 14.4M  100 14.4M    0     0  2053k      0  0:00:07  0:00:07 --:--:-- 2716k

2019-06-14 02:47:40 (580): Guest Log: Archive:  s_cerevisiae.ebwt.zip

2019-06-14 02:47:40 (580): Guest Log:   inflating: s_cerevisiae.1.ebwt     

2019-06-14 02:47:40 (580): Guest Log:   inflating: s_cerevisiae.2.ebwt     

2019-06-14 02:47:40 (580): Guest Log:   inflating: s_cerevisiae.3.ebwt     

2019-06-14 02:47:40 (580): Guest Log:   inflating: s_cerevisiae.4.ebwt     

2019-06-14 02:47:40 (580): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  

2019-06-14 02:47:40 (580): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  

2019-06-14 02:47:40 (580): Guest Log:   inflating: make_s_cerevisiae.sh    

2019-06-14 02:47:40 (580): Guest Log: # reads processed: 1

2019-06-14 02:47:40 (580): Guest Log: # reads with at least one reported alignment: 1 (100.00%)

2019-06-14 02:47:40 (580): Guest Log: # reads that failed to align: 0 (0.00%)

2019-06-14 02:47:40 (580): Guest Log: Reported 1 alignments

2019-06-14 02:47:40 (580): Guest Log: Postrun commands...

2019-06-14 02:47:40 (580): Guest Log: boinc_app exited (0)

2019-06-14 02:47:40 (580): Guest Log: Saving results...

2019-06-14 02:47:40 (580): Guest Log: make_s_cerevisiae.sh

2019-06-14 02:47:40 (580): Guest Log: res_bowtie.txt

2019-06-14 02:47:40 (580): VM Completion File Detected.
2019-06-14 02:47:40 (580): Powering off VM.
2019-06-14 02:47:41 (580): Successfully stopped VM.
2019-06-14 02:47:41 (580): Deregistering VM. (boinc_44bdeb9c38e1cda9, slot#2)
2019-06-14 02:47:41 (580): Removing network bandwidth throttle group from VM.
2019-06-14 02:47:41 (580): Removing VM from VirtualBox.
2019-06-14 02:47:41 (580): Removing virtual ISO 9660 disk from VirtualBox.
02:47:46 (580): called boinc_finish(0)

</stderr_txt>
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