Task 226185

Name boinc2docker_13382_1556824600.242307_7
Workunit 68132
Created 16 May 2019, 22:21:01 UTC
Sent 16 May 2019, 22:21:37 UTC
Report deadline 23 May 2019, 22:21:37 UTC
Received 17 May 2019, 6:56:15 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 627
Run time 5 min 28 sec
CPU time 4 min 13 sec
Validate state Valid
Credit 14.95
Device peak FLOPS 7.45 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 92.70 MB
Peak swap size 104.32 MB
Peak disk usage 237.99 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-17 08:50:29 (17008): vboxwrapper (7.9.26200): starting
2019-05-17 08:50:29 (17008): Feature: Checkpoint interval offset (417 seconds)
2019-05-17 08:50:29 (17008): Detected: VirtualBox COM Interface (Version: 5.2.26)
2019-05-17 08:50:29 (17008): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-17 08:50:29 (17008): Create VM. (boinc_5e652cd1d69f2410, slot#0)
2019-05-17 08:50:29 (17008): Updating drive controller type and model for desired configuration.
2019-05-17 08:50:29 (17008): Setting Memory Size for VM. (3288MB)
2019-05-17 08:50:29 (17008): Setting CPU Count for VM. (2)
2019-05-17 08:50:30 (17008): Setting Chipset Options for VM.
2019-05-17 08:50:30 (17008): Setting Boot Options for VM.
2019-05-17 08:50:30 (17008): Enabling VM Network Access.
2019-05-17 08:50:30 (17008): Setting Network Configuration for NAT.
2019-05-17 08:50:30 (17008): Disabling USB Support for VM.
2019-05-17 08:50:30 (17008): Disabling COM Port Support for VM.
2019-05-17 08:50:30 (17008): Disabling LPT Port Support for VM.
2019-05-17 08:50:30 (17008): Disabling Audio Support for VM.
2019-05-17 08:50:30 (17008): Disabling Clipboard Support for VM.
2019-05-17 08:50:30 (17008): Disabling Drag and Drop Support for VM.
2019-05-17 08:50:30 (17008): Adding storage controller(s) to VM.
2019-05-17 08:50:30 (17008): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-17 08:50:30 (17008): Adding VirtualBox Guest Additions to VM.
2019-05-17 08:50:30 (17008): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-17 08:50:30 (17008): Enabling shared directory for VM.
2019-05-17 08:50:30 (17008): Starting VM. (boinc_5e652cd1d69f2410, slot#0)
2019-05-17 08:50:39 (17008): Guest Log: BIOS: VirtualBox 5.2.26

2019-05-17 08:50:39 (17008): Guest Log: CPUID EDX: 0x178bfbff

2019-05-17 08:50:39 (17008): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-05-17 08:50:39 (17008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-05-17 08:50:39 (17008): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-05-17 08:50:39 (17008): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-05-17 08:50:39 (17008): Guest Log: BIOS: Booting from CD-ROM...

2019-05-17 08:50:39 (17008): Successfully started VM. (PID = '9888')
2019-05-17 08:50:39 (17008): Reporting VM Process ID to BOINC.
2019-05-17 08:50:44 (17008): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-05-17 08:50:44 (17008): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-05-17 08:50:44 (17008): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-17 08:50:49 (17008): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-05-17 08:50:49 (17008): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-05-17 08:50:49 (17008): Guest Log: net.ipv4.ip_forward = 1

2019-05-17 08:50:49 (17008): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-05-17 08:50:49 (17008): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-17 08:50:49 (17008): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-05-17 08:50:49 (17008): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-17 08:50:49 (17008): Guest Log: Segmentation fault

2019-05-17 08:50:49 (17008): Guest Log: automount ...

2019-05-17 08:50:54 (17008): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-05-17 08:50:54 (17008): Guest Log: automount over.

2019-05-17 08:50:54 (17008): Guest Log: Setting hostname to boot2docker Done.

2019-05-17 08:50:54 (17008): Guest Log: Fri May 17 08:50:47 UTC 2019 dhcp -------------------------------

2019-05-17 08:50:54 (17008): Preference change detected
2019-05-17 08:50:54 (17008): Setting CPU throttle for VM. (100%)
2019-05-17 08:50:54 (17008): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-17 08:50:59 (17008): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1090)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00 (1319)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1320)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1321)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1322)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1323)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1324)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1325)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1326)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1327)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1328)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1329)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1330)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1331)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1332)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1333)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1334)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1335)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1336)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1337)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1338)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1339)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1340)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1341)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1342)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1343)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1344)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1345)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1346)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1347)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1348)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1349)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1350)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1351)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1352)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1353)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1354)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1355)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1356)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1357)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1358)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1359)

2019-05-17 08:50:59 (17008): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1360)

2019-05-17 08:50:59 (17008): Guest Log: Fri May 17 08:50:53 UTC 2019 dhcp -------------------------------

2019-05-17 08:50:59 (17008): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000107 main     Log opened 2019-05-17T08:50:53.554020000Z

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000216 main     OS Product: Linux

2019-05-17 08:50:59 (17008): Guest Log: V00:00:00.000283 main     OS Release: 4.1.19-boot2docker

2019-05-17 08:50:59 (17008): Guest Log: Box00:00:00.000331 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-17 08:50:59 (17008): Guest Log: er00:00:00.000374 main     Executable: /sbin/VBoxServicev

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000376 main     Process ID: 992

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000377 main     Package type: LINUX_64BITS_GENERIC

2019-05-17 08:50:59 (17008): Guest Log:  5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release00:00:00.001558 main     5.0.16 r105871 started. Verbose level = 0

2019-05-17 08:50:59 (17008): Guest Log: og

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000107 main     Log opened 2019-05-17T08:50:53.554020000Z

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000216 main     OS Product: Linux

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000283 main     OS Release: 4.1.19-boot2docker

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000331 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000374 main     Executable: /sbin/VBoxService

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.016853 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.016940 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000376 main     Process ID: 992

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.000377 main     Package type: LINUX_64BITS_GENERIC

2019-05-17 08:50:59 (17008): Guest Log: 00:00:00.001558 main     5.0.16 r105871 started. Verbose level = 0

2019-05-17 08:50:59 (17008): Guest Log: Mounting BOINC shared/...

2019-05-17 08:50:59 (17008): Guest Log: -------------------

2019-05-17 08:50:59 (17008): Guest Log: Fri May 17 06:50:56 UTC 2019

2019-05-17 08:51:04 (17008): Guest Log: 00:00:05.019083 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-05-17 08:51:04 (17008): Guest Log: Fri May 17 06:51:01 UTC 2019

2019-05-17 08:51:04 (17008): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-05-17 08:51:04 (17008): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-05-17 08:51:04 (17008): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-05-17 08:51:04 (17008): Guest Log:        valid_lft forever preferred_lft forever

2019-05-17 08:51:04 (17008): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-05-17 08:51:04 (17008): Guest Log:     link/ether 6a:70:0c:c4:56:3e brd ff:ff:ff:ff:ff:ff

2019-05-17 08:51:04 (17008): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-05-17 08:51:04 (17008): Guest Log:     link/ether 08:00:27:fa:10:c1 brd ff:ff:ff:ff:ff:ff

2019-05-17 08:51:04 (17008): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-05-17 08:51:04 (17008): Guest Log:        valid_lft forever preferred_lft forever

2019-05-17 08:51:04 (17008): Guest Log: -------------------

2019-05-17 08:51:04 (17008): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-05-17 08:51:04 (17008): Guest Log: Waiting for Docker daemon to start...

2019-05-17 08:51:04 (17008): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-17 08:51:04 (17008): Guest Log: Running boinc_app...

2019-05-17 08:51:04 (17008): Guest Log: Importing Docker image from BOINC...

2019-05-17 08:51:10 (17008): Guest Log: 00:00:10.020709 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-05-17 08:51:35 (17008): Guest Log: Prerun diagnostics...

2019-05-17 08:51:35 (17008): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2019-05-17 08:51:35 (17008): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        11 months ago       697 MB

2019-05-17 08:51:35 (17008): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-05-17 08:51:35 (17008): Guest Log: 705.2M	/var/lib/docker

2019-05-17 08:51:35 (17008): Guest Log:               total        used        free      shared  buff/cache   available

2019-05-17 08:51:35 (17008): Guest Log: Mem:           3219          54        2247         869         917        2249

2019-05-17 08:51:35 (17008): Guest Log: Swap:           753           0         753

2019-05-17 08:51:35 (17008): Guest Log: Prerun commands...

2019-05-17 08:51:35 (17008): Guest Log: Running... 

2019-05-17 08:51:35 (17008): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-17 08:51:35 (17008): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-17 08:51:35 (17008): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-17 08:51:35 (17008): Guest Log: 100  211k  100  211k    0     0   213k      0 --:--:-- --:--:-- --:--:--  353k

2019-05-17 08:51:35 (17008): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-17 08:51:35 (17008): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-17 08:51:35 (17008): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-17 08:51:35 (17008): Guest Log: 102  3878  102  3878    0     0   8912      0 --:--:-- --:--:-- --:--:-- 24858

2019-05-17 08:51:35 (17008): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-17 08:51:35 (17008): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-17 08:51:35 (17008): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-17 08:51:35 (17008): Guest Log: 102  3983  102  3983    0     0   9011      0 --:--:-- --:--:-- --:--:-- 25050

2019-05-17 08:51:40 (17008): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-17 08:51:40 (17008): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-17 08:51:40 (17008): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-17 08:51:40 (17008): Guest Log:   0  171k    0  1319    0     0   2972      0  0:00:59 --:--:--  0:00:59  8455

2019-05-17 08:51:40 (17008): Guest Log: 100  171k  100  171k    0     0   197k      0 --:--:-- --:--:-- --:--:--  295k

2019-05-17 08:51:40 (17008): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-17 08:51:40 (17008): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-17 08:51:40 (17008): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-17 08:51:40 (17008): Guest Log: 102  3781  102  3781    0     0  11866      0 --:--:-- --:--:-- --:--:-- 24237

2019-05-17 08:51:40 (17008): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-17 08:51:40 (17008): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-17 08:51:40 (17008): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-17 08:51:40 (17008): Guest Log: 102  3781  102  3781    0     0   7177      0 --:--:-- --:--:-- --:--:-- 24237

2019-05-17 08:51:40 (17008): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-17 08:51:40 (17008): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-17 08:51:40 (17008): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-17 08:51:40 (17008): Guest Log: 157   157  157   157    0     0    502      0 --:--:-- --:--:-- --:--:--  1012

2019-05-17 08:51:40 (17008): Guest Log: #################################################################

2019-05-17 08:51:40 (17008): Guest Log: # If you used AutoDock Vina in your work, please cite:          #

2019-05-17 08:51:40 (17008): Guest Log: #                                                               #

2019-05-17 08:51:40 (17008): Guest Log: # O. Trott, A. J. Olson,                                        #

2019-05-17 08:51:40 (17008): Guest Log: # AutoDock Vina: improving the speed and accuracy of docking    #

2019-05-17 08:51:40 (17008): Guest Log: # with a new scoring function, efficient optimization and       #

2019-05-17 08:51:40 (17008): Guest Log: # multithreading, Journal of Computational Chemistry 31 (2010)  #

2019-05-17 08:51:40 (17008): Guest Log: # 455-461                                                       #

2019-05-17 08:51:40 (17008): Guest Log: #                                                               #

2019-05-17 08:51:40 (17008): Guest Log: # DOI 10.1002/jcc.21334                                         #

2019-05-17 08:51:40 (17008): Guest Log: #                                                               #

2019-05-17 08:51:40 (17008): Guest Log: # Please see http://vina.scripps.edu for more information.      #

2019-05-17 08:51:40 (17008): Guest Log: #################################################################

2019-05-17 08:51:40 (17008): Guest Log: Reading input ... done.

2019-05-17 08:51:40 (17008): Guest Log: Setting up the scoring function ... done.

2019-05-17 08:51:40 (17008): Guest Log: Analyzing the binding site ... done.

2019-05-17 08:51:40 (17008): Guest Log: Using random seed: 676452268

2019-05-17 08:51:40 (17008): Guest Log: Performing search ... 

2019-05-17 08:51:40 (17008): Guest Log: 0%   10   20   30   40   50   60   70   80   90   100%

2019-05-17 08:51:40 (17008): Guest Log: |----|----|----|----|----|----|----|----|----|----|

2019-05-17 08:55:45 (17008): Guest Log: ***************************************************

2019-05-17 08:55:45 (17008): Guest Log: done.

2019-05-17 08:55:45 (17008): Guest Log: Refining results ... done.

2019-05-17 08:55:45 (17008): Guest Log: mode |   affinity | dist from best mode

2019-05-17 08:55:45 (17008): Guest Log:      | (kcal/mol) | rmsd l.b.| rmsd u.b.

2019-05-17 08:55:45 (17008): Guest Log: -----+------------+----------+----------

2019-05-17 08:55:45 (17008): Guest Log:    1        -12.9      0.000      0.000

2019-05-17 08:55:45 (17008): Guest Log:    2        -11.0      3.350     12.214

2019-05-17 08:55:45 (17008): Guest Log:    3        -10.8      2.543     12.533

2019-05-17 08:55:45 (17008): Guest Log:    4        -10.7      3.113     12.431

2019-05-17 08:55:45 (17008): Guest Log:    5        -10.4      2.972     13.857

2019-05-17 08:55:45 (17008): Guest Log: Writing output ... done.

2019-05-17 08:55:45 (17008): Guest Log: Postrun commands...

2019-05-17 08:55:45 (17008): Guest Log: boinc_app exited (0)

2019-05-17 08:55:45 (17008): Guest Log: Saving results...

2019-05-17 08:55:45 (17008): Guest Log: 1OPK.pdbqt

2019-05-17 08:55:45 (17008): Guest Log: ZINC00000567.pdbqt

2019-05-17 08:55:45 (17008): Guest Log: all.pdbqt

2019-05-17 08:55:45 (17008): Guest Log: ligand.pdbqt

2019-05-17 08:55:45 (17008): Guest Log: ligand_experiment.pdbqt

2019-05-17 08:55:45 (17008): Guest Log: protein.pdbqt

2019-05-17 08:55:45 (17008): VM Completion File Detected.
2019-05-17 08:55:45 (17008): Powering off VM.
2019-05-17 08:55:46 (17008): Successfully stopped VM.
2019-05-17 08:55:51 (17008): Deregistering VM. (boinc_5e652cd1d69f2410, slot#0)
2019-05-17 08:55:51 (17008): Removing virtual disk drive(s) from VM.
2019-05-17 08:55:51 (17008): Removing network bandwidth throttle group from VM.
2019-05-17 08:55:51 (17008): Removing storage controller(s) from VM.
2019-05-17 08:55:52 (17008): Removing VM from VirtualBox.
08:55:57 (17008): called boinc_finish(0)

</stderr_txt>
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