Task 225377

Name boinc2docker_18297_1556845902.803573_3
Workunit 96038
Created 10 May 2019, 21:08:27 UTC
Sent 10 May 2019, 21:14:27 UTC
Report deadline 17 May 2019, 21:14:27 UTC
Received 10 May 2019, 21:32:06 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 281
Run time 1 min 57 sec
CPU time 1 min 16 sec
Validate state Valid
Credit 14.13
Device peak FLOPS 15.45 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 312.12 MB
Peak swap size 4,276.81 MB
Peak disk usage 340.70 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-10 16:23:12 (11336): vboxwrapper (7.7.26197): starting
2019-05-10 16:23:14 (11336): Feature: Checkpoint interval offset (345 seconds)
2019-05-10 16:23:14 (11336): Detected: VirtualBox VboxManage Interface (Version: 6.0.6)
2019-05-10 16:23:14 (11336): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-10 16:23:14 (11336): Create VM. (boinc_59f7f388a1c833f9, slot#24)
2019-05-10 16:23:14 (11336): Updating drive controller type and model for desired configuration.
2019-05-10 16:23:15 (11336): Setting Memory Size for VM. (3534MB)
2019-05-10 16:23:15 (11336): Setting CPU Count for VM. (4)
2019-05-10 16:23:15 (11336): Setting Chipset Options for VM.
2019-05-10 16:23:15 (11336): Setting Boot Options for VM.
2019-05-10 16:23:15 (11336): Setting Network Configuration for NAT.
2019-05-10 16:23:15 (11336): Enabling VM Network Access.
2019-05-10 16:23:16 (11336): Disabling USB Support for VM.
2019-05-10 16:23:16 (11336): Disabling COM Port Support for VM.
2019-05-10 16:23:16 (11336): Disabling LPT Port Support for VM.
2019-05-10 16:23:16 (11336): Disabling Audio Support for VM.
2019-05-10 16:23:16 (11336): Disabling Clipboard Support for VM.
2019-05-10 16:23:16 (11336): Disabling Drag and Drop Support for VM.
2019-05-10 16:23:17 (11336): Adding storage controller(s) to VM.
2019-05-10 16:23:17 (11336): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-10 16:23:17 (11336): Adding VirtualBox Guest Additions to VM.
2019-05-10 16:23:17 (11336): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-10 16:23:17 (11336): Enabling shared directory for VM.
2019-05-10 16:23:17 (11336): Starting VM. (boinc_59f7f388a1c833f9, slot#24)
2019-05-10 16:23:19 (11336): Successfully started VM. (PID = '11745')
2019-05-10 16:23:19 (11336): Reporting VM Process ID to BOINC.
2019-05-10 16:23:19 (11336): Guest Log: BIOS: VirtualBox 6.0.6
2019-05-10 16:23:19 (11336): Guest Log: CPUID EDX: 0x178bfbff
2019-05-10 16:23:19 (11336): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-10 16:23:19 (11336): Preference change detected
2019-05-10 16:23:19 (11336): Setting CPU throttle for VM. (100%)
2019-05-10 16:23:19 (11336): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-10 16:23:23 (11336): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-05-10 16:23:23 (11336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-05-10 16:23:23 (11336): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-05-10 16:23:23 (11336): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-05-10 16:23:23 (11336): Guest Log: BIOS: Booting from CD-ROM...
2019-05-10 16:23:28 (11336): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-05-10 16:23:28 (11336): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-05-10 16:23:41 (11336): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-05-10 16:23:41 (11336): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-05-10 16:23:41 (11336): Guest Log: net.ipv4.ip_forward = 1
2019-05-10 16:23:41 (11336): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-05-10 16:23:41 (11336): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-05-10 16:23:41 (11336): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-05-10 16:23:41 (11336): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-05-10 16:23:41 (11336): Guest Log: Segmentation fault
2019-05-10 16:23:42 (11336): Guest Log: automount ...
2019-05-10 16:23:42 (11336): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-05-10 16:23:42 (11336): Guest Log: automount over.
2019-05-10 16:23:42 (11336): Guest Log: Setting hostname to boot2docker Done.
2019-05-10 16:23:42 (11336): Guest Log: Fri May 10 16:23:40 UTC 2019 dhcp -------------------------------
2019-05-10 16:23:48 (11336): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1368)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1371)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1372)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1373)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1374)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1375)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1376)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1377)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1378)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1379)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1380)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1381)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1383)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1384)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1385)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1386)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1387)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1388)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1389)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1390)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1391)
2019-05-10 16:23:48 (11336): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1396)
2019-05-10 16:23:49 (11336): Guest Log: Fri May 10 16:23:46 UTC 2019 dhcp -------------------------------
2019-05-10 16:23:49 (11336): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.000170 main     Log opened 2019-05-10T16:23:47.591711000Z
2019-05-10 16:23:49 (11336): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.000170 main     Log opened 2019-05-10T16:23:47.591711000Z
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.003549 main     OS Product: Linux
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.003549 main     OS Product: Linux
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.004618 main     OS Release: 4.1.19-boot2docker
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.004618 main     OS Release: 4.1.19-boot2docker
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.005817 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.005817 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.007472 main     Executable: /sbin/VBoxService
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.007474 main     Process ID: 846
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.007475 main     Package type: LINUX_64BITS_GENERIC
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.007472 main     Executable: /sbin/VBoxService
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.007474 main     Process ID: 846
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.007475 main     Package type: LINUX_64BITS_GENERIC
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.013898 main     5.0.16 r105871 started. Verbose level = 0
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.013898 main     5.0.16 r105871 started. Verbose level = 0
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.091517 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-05-10 16:23:49 (11336): Guest Log: 00:00:00.091633 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-05-10 16:23:50 (11336): Guest Log: Mounting BOINC shared/...
2019-05-10 16:23:50 (11336): Guest Log: -------------------
2019-05-10 16:23:50 (11336): Guest Log: Fri May 10 21:23:50 UTC 2019
2019-05-10 16:23:55 (11336): Guest Log: 00:00:05.098798 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-05-10 16:23:55 (11336): Guest Log: Fri May 10 21:23:55 UTC 2019
2019-05-10 16:23:55 (11336): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-05-10 16:23:55 (11336): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-05-10 16:23:55 (11336): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-05-10 16:23:55 (11336): Guest Log:        valid_lft forever preferred_lft forever
2019-05-10 16:23:55 (11336): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-05-10 16:23:55 (11336): Guest Log:     link/ether 3a:2a:12:d1:28:e1 brd ff:ff:ff:ff:ff:ff
2019-05-10 16:23:55 (11336): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-05-10 16:23:55 (11336): Guest Log:     link/ether 08:00:27:63:90:95 brd ff:ff:ff:ff:ff:ff
2019-05-10 16:23:55 (11336): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-05-10 16:23:55 (11336): Guest Log:        valid_lft forever preferred_lft forever
2019-05-10 16:23:55 (11336): Guest Log: -------------------
2019-05-10 16:23:55 (11336): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-05-10 16:23:55 (11336): Guest Log: Waiting for Docker daemon to start...
2019-05-10 16:24:01 (11336): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-05-10 16:24:01 (11336): Guest Log: Running boinc_app...
2019-05-10 16:24:01 (11336): Guest Log: Importing Docker image from BOINC...
2019-05-10 16:24:01 (11336): Guest Log: 00:00:10.100144 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-05-10 16:24:43 (11336): Guest Log: Prerun diagnostics...
2019-05-10 16:24:43 (11336): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-05-10 16:24:43 (11336): Guest Log: carlosred/bowtie    built               4beacb78841d        11 months ago       758.7 MB
2019-05-10 16:24:43 (11336): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-05-10 16:24:43 (11336): Guest Log: 753.8M	/var/lib/docker
2019-05-10 16:24:43 (11336): Guest Log:               total        used        free      shared  buff/cache   available
2019-05-10 16:24:43 (11336): Guest Log: Mem:           3461          54        2447         917         959        2448
2019-05-10 16:24:43 (11336): Guest Log: Swap:           813           0         813
2019-05-10 16:24:43 (11336): Guest Log: Prerun commands...
2019-05-10 16:24:43 (11336): Guest Log: Running... 
2019-05-10 16:24:44 (11336): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-10 16:24:44 (11336): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-10 16:25:01 (11336): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-10 16:25:01 (11336): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-10 16:25:01 (11336): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-05-10 16:25:01 (11336): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-10 16:25:01 (11336): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0
2019-05-10 16:25:01 (11336): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:04 --:--:--     0
2019-05-10 16:25:01 (11336): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:05 --:--:--     0
2019-05-10 16:25:01 (11336): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:06 --:--:--     0
2019-05-10 16:25:01 (11336): Guest Log:   5 14.4M    5  832k    0     0   118k      0  0:02:04  0:00:07  0:01:57  185k
2019-05-10 16:25:01 (11336): Guest Log:  14 14.4M   14 2081k    0     0   259k      0  0:00:56  0:00:08  0:00:48  464k
2019-05-10 16:25:01 (11336): Guest Log:  22 14.4M   22 3329k    0     0   369k      0  0:00:40  0:00:09  0:00:31  743k
2019-05-10 16:25:01 (11336): Guest Log:  30 14.4M   30 4580k    0     0   457k      0  0:00:32  0:00:10  0:00:22 1028k
2019-05-10 16:25:01 (11336): Guest Log:  39 14.4M   39 5830k    0     0   529k      0  0:00:27  0:00:11  0:00:16 1170k
2019-05-10 16:25:01 (11336): Guest Log:  47 14.4M   47 7080k    0     0   589k      0  0:00:25  0:00:12  0:00:13 1249k
2019-05-10 16:25:01 (11336): Guest Log:  56 14.4M   56 8330k    0     0   640k      0  0:00:23  0:00:13  0:00:10 1249k
2019-05-10 16:25:01 (11336): Guest Log:  64 14.4M   64 9581k    0     0   683k      0  0:00:21  0:00:14  0:00:07 1250k
2019-05-10 16:25:01 (11336): Guest Log:  73 14.4M   73 10.5M    0     0   721k      0  0:00:20  0:00:15  0:00:05 1250k
2019-05-10 16:25:01 (11336): Guest Log:  81 14.4M   81 11.7M    0     0   754k      0  0:00:19  0:00:16  0:00:03 1250k
2019-05-10 16:25:01 (11336): Guest Log:  90 14.4M   90 13.0M    0     0   783k      0  0:00:18  0:00:17  0:00:01 1250k
2019-05-10 16:25:01 (11336): Guest Log:  98 14.4M   98 14.2M    0     0   809k      0  0:00:18  0:00:18 --:--:-- 1250k
2019-05-10 16:25:01 (11336): Guest Log: 100 14.4M  100 14.4M    0     0   813k      0  0:00:18  0:00:18 --:--:-- 1250k
2019-05-10 16:25:01 (11336): Guest Log: Archive:  s_cerevisiae.ebwt.zip
2019-05-10 16:25:01 (11336): Guest Log:   inflating: s_cerevisiae.1.ebwt     
2019-05-10 16:25:01 (11336): Guest Log:   inflating: s_cerevisiae.2.ebwt     
2019-05-10 16:25:01 (11336): Guest Log:   inflating: s_cerevisiae.3.ebwt     
2019-05-10 16:25:01 (11336): Guest Log:   inflating: s_cerevisiae.4.ebwt     
2019-05-10 16:25:01 (11336): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  
2019-05-10 16:25:01 (11336): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  
2019-05-10 16:25:01 (11336): Guest Log:   inflating: make_s_cerevisiae.sh    
2019-05-10 16:25:01 (11336): Guest Log: # reads processed: 1
2019-05-10 16:25:01 (11336): Guest Log: # reads with at least one reported alignment: 1 (100.00%)
2019-05-10 16:25:01 (11336): Guest Log: # reads that failed to align: 0 (0.00%)
2019-05-10 16:25:01 (11336): Guest Log: Reported 1 alignments
2019-05-10 16:25:02 (11336): Guest Log: Postrun commands...
2019-05-10 16:25:02 (11336): Guest Log: boinc_app exited (0)
2019-05-10 16:25:02 (11336): Guest Log: Saving results...
2019-05-10 16:25:02 (11336): Guest Log: make_s_cerevisiae.sh
2019-05-10 16:25:02 (11336): Guest Log: res_bowtie.txt
2019-05-10 16:25:02 (11336): VM Completion File Detected.
2019-05-10 16:25:02 (11336): Powering off VM.
2019-05-10 16:25:03 (11336): Successfully stopped VM.
2019-05-10 16:25:03 (11336): Deregistering VM. (boinc_59f7f388a1c833f9, slot#24)
2019-05-10 16:25:03 (11336): Removing network bandwidth throttle group from VM.
2019-05-10 16:25:03 (11336): Removing storage controller(s) from VM.
2019-05-10 16:25:03 (11336): Removing VM from VirtualBox.
2019-05-10 16:25:03 (11336): Removing virtual ISO 9660 disk from VirtualBox.
16:25:08 (11336): called boinc_finish(0)

</stderr_txt>
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