Task 224598

Name boinc2docker_4985_1556844485.758737_2
Workunit 92907
Created 10 May 2019, 19:09:12 UTC
Sent 10 May 2019, 19:10:22 UTC
Report deadline 17 May 2019, 19:10:22 UTC
Received 10 May 2019, 19:27:18 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 281
Run time 1 min 31 sec
CPU time 49 sec
Validate state Valid
Credit 9.71
Device peak FLOPS 15.45 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 106.54 MB
Peak swap size 3,078.29 MB
Peak disk usage 155.69 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-10 14:18:10 (7742): vboxwrapper (7.7.26197): starting
2019-05-10 14:18:12 (7742): Feature: Checkpoint interval offset (333 seconds)
2019-05-10 14:18:12 (7742): Detected: VirtualBox VboxManage Interface (Version: 6.0.6)
2019-05-10 14:18:13 (7742): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-10 14:18:13 (7742): Create VM. (boinc_c1a523db37ab79e6, slot#14)
2019-05-10 14:18:13 (7742): Updating drive controller type and model for desired configuration.
2019-05-10 14:18:13 (7742): Setting Memory Size for VM. (1651MB)
2019-05-10 14:18:13 (7742): Setting CPU Count for VM. (4)
2019-05-10 14:18:13 (7742): Setting Chipset Options for VM.
2019-05-10 14:18:13 (7742): Setting Boot Options for VM.
2019-05-10 14:18:13 (7742): Setting Network Configuration for NAT.
2019-05-10 14:18:14 (7742): Enabling VM Network Access.
2019-05-10 14:18:14 (7742): Disabling USB Support for VM.
2019-05-10 14:18:14 (7742): Disabling COM Port Support for VM.
2019-05-10 14:18:14 (7742): Disabling LPT Port Support for VM.
2019-05-10 14:18:14 (7742): Disabling Audio Support for VM.
2019-05-10 14:18:14 (7742): Disabling Clipboard Support for VM.
2019-05-10 14:18:14 (7742): Disabling Drag and Drop Support for VM.
2019-05-10 14:18:14 (7742): Adding storage controller(s) to VM.
2019-05-10 14:18:14 (7742): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-10 14:18:15 (7742): Adding VirtualBox Guest Additions to VM.
2019-05-10 14:18:15 (7742): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-10 14:18:15 (7742): Enabling shared directory for VM.
2019-05-10 14:18:15 (7742): Starting VM. (boinc_c1a523db37ab79e6, slot#14)
2019-05-10 14:18:17 (7742): Successfully started VM. (PID = '8153')
2019-05-10 14:18:17 (7742): Reporting VM Process ID to BOINC.
2019-05-10 14:18:17 (7742): Guest Log: BIOS: VirtualBox 6.0.6
2019-05-10 14:18:17 (7742): Guest Log: CPUID EDX: 0x178bfbff
2019-05-10 14:18:17 (7742): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-10 14:18:17 (7742): Preference change detected
2019-05-10 14:18:17 (7742): Setting CPU throttle for VM. (100%)
2019-05-10 14:18:17 (7742): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-10 14:18:22 (7742): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-05-10 14:18:22 (7742): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-05-10 14:18:22 (7742): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-05-10 14:18:22 (7742): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-05-10 14:18:22 (7742): Guest Log: BIOS: Booting from CD-ROM...
2019-05-10 14:18:25 (7742): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-05-10 14:18:25 (7742): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-05-10 14:18:39 (7742): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-05-10 14:18:39 (7742): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-05-10 14:18:40 (7742): Guest Log: net.ipv4.ip_forward = 1
2019-05-10 14:18:40 (7742): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-05-10 14:18:40 (7742): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-05-10 14:18:40 (7742): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-05-10 14:18:40 (7742): Guest Log: Segmentation fault
2019-05-10 14:18:40 (7742): Guest Log: automount ...
2019-05-10 14:18:40 (7742): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-05-10 14:18:41 (7742): Guest Log: automount over.
2019-05-10 14:18:41 (7742): Guest Log: Setting hostname to boot2docker Done.
2019-05-10 14:18:41 (7742): Guest Log: Fri May 10 14:18:39 UTC 2019 dhcp -------------------------------
2019-05-10 14:18:46 (7742): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-05-10 14:18:46 (7742): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1391)
2019-05-10 14:18:47 (7742): Guest Log: Fri May 10 14:18:45 UTC 2019 dhcp -------------------------------
2019-05-10 14:18:47 (7742): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.000128 main     Log opened 2019-05-10T14:18:46.071038000Z
2019-05-10 14:18:47 (7742): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.000128 main     Log opened 2019-05-10T14:18:46.071038000Z
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.007591 main     OS Product: Linux
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.007591 main     OS Product: Linux
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.008824 main     OS Release: 4.1.19-boot2docker
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.008824 main     OS Release: 4.1.19-boot2docker
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.010020 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.010075 main     Executable: /sbin/VBoxService
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.010077 main     Process ID: 876
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.010079 main     Package type: LINUX_64BITS_GENERIC
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.010020 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.012158 main     5.0.16 r105871 started. Verbose level = 0
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.010075 main     Executable: /sbin/VBoxService
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.010077 main     Process ID: 876
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.010079 main     Package type: LINUX_64BITS_GENERIC
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.032533 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-05-10 14:18:47 (7742): Guest Log: 00:00:00.032618 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-05-10 14:18:48 (7742): Guest Log: Mounting BOINC shared/...
2019-05-10 14:18:48 (7742): Guest Log: -------------------
2019-05-10 14:18:48 (7742): Guest Log: Fri May 10 19:18:48 UTC 2019
2019-05-10 14:18:54 (7742): Guest Log: 00:00:05.034274 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-05-10 14:18:54 (7742): Guest Log: Fri May 10 19:18:53 UTC 2019
2019-05-10 14:18:54 (7742): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-05-10 14:18:54 (7742): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-05-10 14:18:54 (7742): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-05-10 14:18:54 (7742): Guest Log:        valid_lft forever preferred_lft forever
2019-05-10 14:18:54 (7742): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-05-10 14:18:54 (7742): Guest Log:     link/ether f2:14:25:20:fc:30 brd ff:ff:ff:ff:ff:ff
2019-05-10 14:18:54 (7742): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-05-10 14:18:54 (7742): Guest Log:     link/ether 08:00:27:06:6b:22 brd ff:ff:ff:ff:ff:ff
2019-05-10 14:18:54 (7742): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-05-10 14:18:54 (7742): Guest Log:        valid_lft forever preferred_lft forever
2019-05-10 14:18:54 (7742): Guest Log: -------------------
2019-05-10 14:18:54 (7742): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-05-10 14:18:54 (7742): Guest Log: Waiting for Docker daemon to start...
2019-05-10 14:19:00 (7742): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-05-10 14:19:00 (7742): Guest Log: Running boinc_app...
2019-05-10 14:19:00 (7742): Guest Log: Importing Docker image from BOINC...
2019-05-10 14:19:00 (7742): Guest Log: 00:00:10.036208 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-05-10 14:19:16 (7742): Guest Log: Prerun diagnostics...
2019-05-10 14:19:16 (7742): Guest Log: REPOSITORY           TAG                 IMAGE ID            CREATED             SIZE
2019-05-10 14:19:16 (7742): Guest Log: carlosred/namd-cpu   latest              fb42fdee7dc5        10 months ago       287.9 MB
2019-05-10 14:19:16 (7742): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-05-10 14:19:16 (7742): Guest Log: 290.5M	/var/lib/docker
2019-05-10 14:19:16 (7742): Guest Log:               total        used        free      shared  buff/cache   available
2019-05-10 14:19:16 (7742): Guest Log: Mem:           1611          48        1076         454         486        1078
2019-05-10 14:19:16 (7742): Guest Log: Swap:           351           0         351
2019-05-10 14:19:16 (7742): Guest Log: Prerun commands...
2019-05-10 14:19:16 (7742): Guest Log: Running... 
2019-05-10 14:19:18 (7742): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-10 14:19:18 (7742): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-10 14:19:24 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-10 14:19:24 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-05-10 14:19:24 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-10 14:19:24 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0
2019-05-10 14:19:24 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:04 --:--:--     0
2019-05-10 14:19:24 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:05 --:--:--     0
2019-05-10 14:19:24 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:05 --:--:--     0
2019-05-10 14:19:24 (7742): Guest Log: 100 12953  100 12953    0     0   2224      0  0:00:05  0:00:05 --:--:--  3926
2019-05-10 14:19:24 (7742): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-10 14:19:24 (7742): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-10 14:19:27 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-10 14:19:27 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-05-10 14:19:27 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-10 14:19:27 (7742): Guest Log: 100   603  100   603    0     0    214      0  0:00:02  0:00:02 --:--:--   214
2019-05-10 14:19:27 (7742): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-10 14:19:27 (7742): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-10 14:19:30 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-10 14:19:30 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-10 14:19:30 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-05-10 14:19:30 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-10 14:19:30 (7742): Guest Log: 100  5616  100  5616    0     0   1980      0  0:00:02  0:00:02 --:--:--  1980
2019-05-10 14:19:30 (7742): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-10 14:19:30 (7742): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-10 14:19:33 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-10 14:19:33 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-10 14:19:33 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-05-10 14:19:33 (7742): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-10 14:19:33 (7742): Guest Log: 100 17389  100 17389    0     0   5951      0  0:00:02  0:00:02 --:--:--  5951
2019-05-10 14:19:33 (7742): Guest Log: Postrun commands...
2019-05-10 14:19:33 (7742): Guest Log: boinc_app exited (0)
2019-05-10 14:19:33 (7742): Guest Log: Saving results...
2019-05-10 14:19:33 (7742): Guest Log: alanin.conf
2019-05-10 14:19:33 (7742): Guest Log: alanin.params
2019-05-10 14:19:33 (7742): Guest Log: alanin.pdb
2019-05-10 14:19:33 (7742): Guest Log: alanin.psf
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.coor
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.dcd
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.restart.coor
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.restart.coor.old
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.restart.vel
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.restart.vel.old
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.restart.xsc
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.restart.xsc.old
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.vel
2019-05-10 14:19:33 (7742): Guest Log: alanin.res.xsc
2019-05-10 14:19:33 (7742): Guest Log: results_namd.res
2019-05-10 14:19:33 (7742): VM Completion File Detected.
2019-05-10 14:19:33 (7742): Powering off VM.
2019-05-10 14:19:34 (7742): Successfully stopped VM.
2019-05-10 14:19:34 (7742): Deregistering VM. (boinc_c1a523db37ab79e6, slot#14)
2019-05-10 14:19:34 (7742): Removing network bandwidth throttle group from VM.
2019-05-10 14:19:34 (7742): Removing storage controller(s) from VM.
2019-05-10 14:19:34 (7742): Removing VM from VirtualBox.
2019-05-10 14:19:34 (7742): Removing virtual ISO 9660 disk from VirtualBox.
14:19:40 (7742): called boinc_finish(0)

</stderr_txt>
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