Task 223942

Name boinc2docker_24486_1556824703.081232_2
Workunit 68237
Created 9 May 2019, 19:18:47 UTC
Sent 9 May 2019, 19:19:04 UTC
Report deadline 16 May 2019, 19:19:04 UTC
Received 14 May 2019, 2:53:39 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 627
Run time 16 min 27 sec
CPU time 1 min 6 sec
Validate state Valid
Credit 32.28
Device peak FLOPS 7.45 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 91.11 MB
Peak swap size 102.89 MB
Peak disk usage 237.99 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-12 18:02:00 (13524): vboxwrapper (7.9.26200): starting
2019-05-12 18:02:00 (13524): Feature: Checkpoint interval offset (209 seconds)
2019-05-12 18:02:00 (13524): Detected: VirtualBox COM Interface (Version: 5.2.26)
2019-05-12 18:02:00 (13524): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-12 18:02:00 (13524): Create VM. (boinc_d7abce2de8b4b950, slot#0)
2019-05-12 18:02:00 (13524): Updating drive controller type and model for desired configuration.
2019-05-12 18:02:00 (13524): Setting Memory Size for VM. (3288MB)
2019-05-12 18:02:00 (13524): Setting CPU Count for VM. (2)
2019-05-12 18:02:00 (13524): Setting Chipset Options for VM.
2019-05-12 18:02:00 (13524): Setting Boot Options for VM.
2019-05-12 18:02:00 (13524): Enabling VM Network Access.
2019-05-12 18:02:00 (13524): Setting Network Configuration for NAT.
2019-05-12 18:02:00 (13524): Disabling USB Support for VM.
2019-05-12 18:02:00 (13524): Disabling COM Port Support for VM.
2019-05-12 18:02:00 (13524): Disabling LPT Port Support for VM.
2019-05-12 18:02:00 (13524): Disabling Audio Support for VM.
2019-05-12 18:02:00 (13524): Disabling Clipboard Support for VM.
2019-05-12 18:02:00 (13524): Disabling Drag and Drop Support for VM.
2019-05-12 18:02:00 (13524): Adding storage controller(s) to VM.
2019-05-12 18:02:00 (13524): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-12 18:02:00 (13524): Adding VirtualBox Guest Additions to VM.
2019-05-12 18:02:00 (13524): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-12 18:02:00 (13524): Enabling shared directory for VM.
2019-05-12 18:02:00 (13524): Starting VM. (boinc_d7abce2de8b4b950, slot#0)
2019-05-12 18:02:10 (13524): Guest Log: BIOS: VirtualBox 5.2.26

2019-05-12 18:02:10 (13524): Guest Log: CPUID EDX: 0x178bfbff

2019-05-12 18:02:10 (13524): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-05-12 18:02:10 (13524): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-05-12 18:02:10 (13524): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-05-12 18:02:10 (13524): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-05-12 18:02:10 (13524): Guest Log: BIOS: Booting from CD-ROM...

2019-05-12 18:02:10 (13524): Successfully started VM. (PID = '9520')
2019-05-12 18:02:10 (13524): Reporting VM Process ID to BOINC.
2019-05-12 18:02:15 (13524): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-05-12 18:02:15 (13524): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-05-12 18:02:15 (13524): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-12 18:02:25 (13524): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-05-12 18:02:25 (13524): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-05-12 18:02:25 (13524): Guest Log: net.ipv4.ip_forward = 1

2019-05-12 18:02:25 (13524): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-05-12 18:02:25 (13524): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-12 18:02:25 (13524): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-05-12 18:02:25 (13524): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-12 18:02:25 (13524): Guest Log: Segmentation fault

2019-05-12 18:02:25 (13524): Guest Log: automount ...

2019-05-12 18:02:25 (13524): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-05-12 18:02:25 (13524): Guest Log: automount over.

2019-05-12 18:02:25 (13524): Guest Log: Setting hostname to boot2docker Done.

2019-05-12 18:02:25 (13524): Guest Log: Sun May 12 18:02:20 UTC 2019 dhcp -------------------------------

2019-05-12 18:02:25 (13524): Preference change detected
2019-05-12 18:02:25 (13524): Setting CPU throttle for VM. (100%)
2019-05-12 18:02:25 (13524): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-12 18:02:30 (13524): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1090)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00 (1319)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1320)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1321)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1322)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1323)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1324)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1325)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1326)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1327)

2019-05-12 18:02:30 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1328)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1329)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1330)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1331)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1332)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1333)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1334)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1335)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1336)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1337)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1338)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1339)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1340)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1341)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1342)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1343)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1344)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1345)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1346)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1347)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1348)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1349)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1350)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1351)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1352)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1353)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1354)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1355)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1356)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1357)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1358)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1359)

2019-05-12 18:02:31 (13524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1360)

2019-05-12 18:02:31 (13524): Guest Log: Sun May 12 18:02:26 UTC 2019 dhcp -------------------------------

2019-05-12 18:02:31 (13524): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000072 main     Log opened 2019-05-12T18:02:26.981008000Z

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000185 main     OS Product: Linux

2019-05-12 18:02:31 (13524): Guest Log: V00:00:00.000252 main     OS Release: 4.1.19-boot2docker

2019-05-12 18:02:31 (13524): Guest Log: Box00:00:00.000299 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-12 18:02:31 (13524): Guest Log: er00:00:00.000346 main     Executable: /sbin/VBoxService

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000347 main     Process ID: 895

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000348 main     Package type: LINUX_64BITS_GENERIC

2019-05-12 18:02:31 (13524): Guest Log:  r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:5500:00:00.001847 main     5.0.16 r105871 started. Verbose level = 0

2019-05-12 18:02:31 (13524): Guest Log:  release log

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000072 main     Log o00:00:00.005743 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.005917 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-05-12 18:02:31 (13524): Guest Log: pened 2019-05-12T18:02:26.981008000Z

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000185 main     OS Product: Linux

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000252 main     OS Release: 4.1.19-boot2docker

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000299 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000346 main     Executable: /sbin/VBoxService

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000347 main     Process ID: 895

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.000348 main     Package type: LINUX_64BITS_GENERIC

2019-05-12 18:02:31 (13524): Guest Log: 00:00:00.001847 main     5.0.16 r105871 started. Verbose level = 0

2019-05-12 18:02:31 (13524): Guest Log: Mounting BOINC shared/...

2019-05-12 18:02:31 (13524): Guest Log: -------------------

2019-05-12 18:02:31 (13524): Guest Log: Sun May 12 16:02:29 UTC 2019

2019-05-12 18:02:36 (13524): Guest Log: 00:00:05.023812 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-05-12 18:02:36 (13524): Guest Log: Sun May 12 16:02:35 UTC 2019

2019-05-12 18:02:36 (13524): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-05-12 18:02:36 (13524): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-05-12 18:02:36 (13524): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-05-12 18:02:36 (13524): Guest Log:        valid_lft forever preferred_lft forever

2019-05-12 18:02:36 (13524): Guest Log:     inet6 ::1/128 scope host 

2019-05-12 18:02:36 (13524): Guest Log:        valid_lft forever preferred_lft forever

2019-05-12 18:02:36 (13524): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-05-12 18:02:36 (13524): Guest Log:     link/ether 5a:71:94:af:0a:83 brd ff:ff:ff:ff:ff:ff

2019-05-12 18:02:36 (13524): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-05-12 18:02:36 (13524): Guest Log:     link/ether 08:00:27:4e:34:19 brd ff:ff:ff:ff:ff:ff

2019-05-12 18:02:36 (13524): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-05-12 18:02:36 (13524): Guest Log:        valid_lft forever preferred_lft forever

2019-05-12 18:02:36 (13524): Guest Log:     inet6 fe80::a00:27ff:fe4e:3419/64 scope link 

2019-05-12 18:02:36 (13524): Guest Log:        valid_lft forever preferred_lft forever

2019-05-12 18:02:36 (13524): Guest Log: -------------------

2019-05-12 18:02:36 (13524): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-05-12 18:02:36 (13524): Guest Log: Waiting for Docker daemon to start...

2019-05-12 18:02:36 (13524): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-12 18:02:36 (13524): Guest Log: Running boinc_app...

2019-05-12 18:02:36 (13524): Guest Log: Importing Docker image from BOINC...

2019-05-12 18:02:41 (13524): Guest Log: 00:00:10.029142 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-05-12 18:03:21 (13524): Guest Log: Prerun diagnostics...

2019-05-12 18:03:21 (13524): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE

2019-05-12 18:03:21 (13524): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        10 months ago       697 MB

2019-05-12 18:03:21 (13524): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-05-12 18:03:21 (13524): Guest Log: 705.2M	/var/lib/docker

2019-05-12 18:03:21 (13524): Guest Log:               total        used        free      shared  buff/cache   available

2019-05-12 18:03:21 (13524): Guest Log: Mem:           3219          50        2252         869         916        2255

2019-05-12 18:03:21 (13524): Guest Log: Swap:           752           0         752

2019-05-12 18:03:21 (13524): Guest Log: Prerun commands...

2019-05-12 18:03:21 (13524): Guest Log: Running... 

2019-05-12 18:05:26 (13524): Guest Log: curl: (7) couldn't connect to host

2019-05-12 18:07:36 (13524): Guest Log: curl: (7) couldn't connect to host

2019-05-12 18:09:42 (13524): Guest Log: curl: (7) couldn't connect to host

2019-05-12 18:11:52 (13524): Guest Log: curl: (7) couldn't connect to host

2019-05-12 18:13:57 (13524): Guest Log: curl: (7) couldn't connect to host

2019-05-12 18:16:02 (13524): Guest Log: curl: (7) couldn't connect to host

2019-05-12 18:18:13 (13524): Guest Log: curl: (7) couldn't connect to host

2019-05-12 18:18:13 (13524): Guest Log: Error: could not open "conf.txt" for reading.

2019-05-12 18:18:13 (13524): Guest Log: Postrun commands...

2019-05-12 18:18:13 (13524): Guest Log: boinc_app exited (0)

2019-05-12 18:18:13 (13524): Guest Log: Saving results...

2019-05-12 18:18:13 (13524): Guest Log: 1OPK.pdbqt

2019-05-12 18:18:13 (13524): Guest Log: ZINC00000567.pdbqt

2019-05-12 18:18:13 (13524): VM Completion File Detected.
2019-05-12 18:18:13 (13524): Powering off VM.
2019-05-12 18:18:14 (13524): Successfully stopped VM.
2019-05-12 18:18:19 (13524): Deregistering VM. (boinc_d7abce2de8b4b950, slot#0)
2019-05-12 18:18:19 (13524): Removing virtual disk drive(s) from VM.
2019-05-12 18:18:19 (13524): Removing network bandwidth throttle group from VM.
2019-05-12 18:18:19 (13524): Removing storage controller(s) from VM.
2019-05-12 18:18:19 (13524): Removing VM from VirtualBox.
18:18:24 (13524): called boinc_finish(0)

</stderr_txt>
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