Task 223505

Name boinc2docker_1264_1556824478.911987_3
Workunit 68018
Created 9 May 2019, 19:14:47 UTC
Sent 9 May 2019, 19:15:30 UTC
Report deadline 16 May 2019, 19:15:30 UTC
Received 9 May 2019, 21:14:12 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 280
Run time 6 min 4 sec
CPU time 5 min 24 sec
Validate state Valid
Credit 39.68
Device peak FLOPS 14.97 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 122.71 MB
Peak swap size 4,344.66 MB
Peak disk usage 238.04 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-09 16:07:57 (5358): vboxwrapper (7.7.26197): starting
2019-05-09 16:07:57 (5358): Feature: Checkpoint interval offset (409 seconds)
2019-05-09 16:07:57 (5358): Detected: VirtualBox VboxManage Interface (Version: 6.0.6)
2019-05-09 16:07:57 (5358): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-09 16:07:57 (5358): Create VM. (boinc_ed23f7966bcad020, slot#50)
2019-05-09 16:07:57 (5358): Updating drive controller type and model for desired configuration.
2019-05-09 16:07:57 (5358): Setting Memory Size for VM. (3288MB)
2019-05-09 16:07:57 (5358): Setting CPU Count for VM. (4)
2019-05-09 16:07:57 (5358): Setting Chipset Options for VM.
2019-05-09 16:07:57 (5358): Setting Boot Options for VM.
2019-05-09 16:07:57 (5358): Setting Network Configuration for NAT.
2019-05-09 16:07:57 (5358): Enabling VM Network Access.
2019-05-09 16:07:58 (5358): Disabling USB Support for VM.
2019-05-09 16:07:58 (5358): Disabling COM Port Support for VM.
2019-05-09 16:07:58 (5358): Disabling LPT Port Support for VM.
2019-05-09 16:07:58 (5358): Disabling Audio Support for VM.
2019-05-09 16:07:58 (5358): Disabling Clipboard Support for VM.
2019-05-09 16:07:58 (5358): Disabling Drag and Drop Support for VM.
2019-05-09 16:07:58 (5358): Adding storage controller(s) to VM.
2019-05-09 16:07:58 (5358): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-09 16:07:58 (5358): Adding VirtualBox Guest Additions to VM.
2019-05-09 16:07:58 (5358): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-09 16:07:58 (5358): Enabling shared directory for VM.
2019-05-09 16:07:58 (5358): Starting VM. (boinc_ed23f7966bcad020, slot#50)
2019-05-09 16:08:00 (5358): Successfully started VM. (PID = '5927')
2019-05-09 16:08:00 (5358): Reporting VM Process ID to BOINC.
2019-05-09 16:08:00 (5358): Guest Log: BIOS: VirtualBox 6.0.6
2019-05-09 16:08:00 (5358): Guest Log: CPUID EDX: 0x178bfbff
2019-05-09 16:08:00 (5358): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-09 16:08:00 (5358): Preference change detected
2019-05-09 16:08:00 (5358): Setting CPU throttle for VM. (100%)
2019-05-09 16:08:00 (5358): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-09 16:08:02 (5358): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-05-09 16:08:02 (5358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-05-09 16:08:02 (5358): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-05-09 16:08:02 (5358): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-05-09 16:08:02 (5358): Guest Log: BIOS: Booting from CD-ROM...
2019-05-09 16:08:09 (5358): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-05-09 16:08:09 (5358): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-05-09 16:08:17 (5358): Guest Log: net.ipv4.ip_forward = 1
2019-05-09 16:08:17 (5358): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-05-09 16:08:17 (5358): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-05-09 16:08:17 (5358): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-05-09 16:08:17 (5358): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-05-09 16:08:17 (5358): Guest Log: Segmentation fault
2019-05-09 16:08:17 (5358): Guest Log: automount ...
2019-05-09 16:08:18 (5358): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-05-09 16:08:18 (5358): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-05-09 16:08:18 (5358): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-05-09 16:08:18 (5358): Guest Log: automount over.
2019-05-09 16:08:18 (5358): Guest Log: Setting hostname to boot2docker Done.
2019-05-09 16:08:18 (5358): Guest Log: Thu May  9 16:08:15 UTC 2019 dhcp -------------------------------
2019-05-09 16:08:23 (5358): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1102)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00 (1334)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1335)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1336)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1337)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1338)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1339)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1340)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1341)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1342)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1343)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1344)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1345)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1346)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1347)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1348)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1349)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1350)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1351)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event5 (1352)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1353)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1354)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1355)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1356)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1357)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1358)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1359)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1360)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1361)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1362)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1363)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1364)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1365)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1366)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1367)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1368)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1369)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1370)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1371)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1372)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1373)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1374)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1375)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1376)
2019-05-09 16:08:23 (5358): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1377)
2019-05-09 16:08:24 (5358): Guest Log: Thu May  9 16:08:21 UTC 2019 dhcp -------------------------------
2019-05-09 16:08:24 (5358): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.000076 main     Log opened 2019-05-09T16:08:21.519990000Z
2019-05-09 16:08:24 (5358): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.000076 main     Log opened 2019-05-09T16:08:21.519990000Z
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.002496 main     OS Product: Linux
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.002496 main     OS Product: Linux
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.003285 main     OS Release: 4.1.19-boot2docker
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.003285 main     OS Release: 4.1.19-boot2docker
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.004255 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.004255 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.005393 main     Executable: /sbin/VBoxService
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.005395 main     Process ID: 906
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.005396 main     Package type: LINUX_64BITS_GENERIC
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.005393 main     Executable: /sbin/VBoxService
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.005395 main     Process ID: 906
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.005396 main     Package type: LINUX_64BITS_GENERIC
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.010747 main     5.0.16 r105871 started. Verbose level = 0
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.010747 main     5.0.16 r105871 started. Verbose level = 0
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.014299 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-05-09 16:08:24 (5358): Guest Log: 00:00:00.014349 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-05-09 16:08:24 (5358): Guest Log: Mounting BOINC shared/...
2019-05-09 16:08:24 (5358): Guest Log: -------------------
2019-05-09 16:08:24 (5358): Guest Log: Thu May  9 21:08:24 UTC 2019
2019-05-09 16:08:29 (5358): Guest Log: 00:00:05.015495 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-05-09 16:08:29 (5358): Guest Log: Thu May  9 21:08:29 UTC 2019
2019-05-09 16:08:29 (5358): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-05-09 16:08:29 (5358): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-05-09 16:08:29 (5358): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-05-09 16:08:29 (5358): Guest Log:        valid_lft forever preferred_lft forever
2019-05-09 16:08:29 (5358): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-05-09 16:08:29 (5358): Guest Log:     link/ether ce:b5:06:3f:b6:b4 brd ff:ff:ff:ff:ff:ff
2019-05-09 16:08:29 (5358): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-05-09 16:08:29 (5358): Guest Log:     link/ether 08:00:27:f9:27:8c brd ff:ff:ff:ff:ff:ff
2019-05-09 16:08:29 (5358): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-05-09 16:08:29 (5358): Guest Log:        valid_lft forever preferred_lft forever
2019-05-09 16:08:29 (5358): Guest Log: -------------------
2019-05-09 16:08:29 (5358): Guest Log: Waiting for Docker daemon to start...
2019-05-09 16:08:30 (5358): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-05-09 16:08:30 (5358): Guest Log: Running boinc_app...
2019-05-09 16:08:30 (5358): Guest Log: Importing Docker image from BOINC...
2019-05-09 16:08:34 (5358): Guest Log: 00:00:10.016262 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-05-09 16:09:03 (5358): Guest Log: Prerun diagnostics...
2019-05-09 16:09:03 (5358): Guest Log: REPOSITORY                TAG                 IMAGE ID            CREATED             SIZE
2019-05-09 16:09:03 (5358): Guest Log: carlosred/autodock-vina   latest              f9dc0bf006e4        10 months ago       697 MB
2019-05-09 16:09:03 (5358): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-05-09 16:09:03 (5358): Guest Log: 705.2M	/var/lib/docker
2019-05-09 16:09:03 (5358): Guest Log:               total        used        free      shared  buff/cache   available
2019-05-09 16:09:03 (5358): Guest Log: Mem:           3219          54        2246         869         917        2249
2019-05-09 16:09:03 (5358): Guest Log: Swap:           753           0         753
2019-05-09 16:09:03 (5358): Guest Log: Prerun commands...
2019-05-09 16:09:03 (5358): Guest Log: Running... 
2019-05-09 16:09:07 (5358): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-09 16:09:07 (5358): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-09 16:09:08 (5358): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0
2019-05-09 16:09:08 (5358): Guest Log: 100  211k  100  211k    0     0  50418      0  0:00:04  0:00:04 --:--:--  372k
2019-05-09 16:09:10 (5358): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-09 16:09:10 (5358): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-09 16:09:10 (5358): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-09 16:09:10 (5358): Guest Log: 102  3878  102  3878    0     0   1705      0  0:00:02  0:00:02 --:--:-- 47292
2019-05-09 16:09:12 (5358): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-09 16:09:12 (5358): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-09 16:09:12 (5358): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-09 16:09:12 (5358): Guest Log: 102  3983  102  3983    0     0   1754      0  0:00:02  0:00:02 --:--:-- 51064
2019-05-09 16:09:15 (5358): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-09 16:09:15 (5358): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-09 16:09:16 (5358): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0
2019-05-09 16:09:16 (5358): Guest Log: 100  171k  100  171k    0     0  49500      0  0:00:03  0:00:03 --:--:--  346k
2019-05-09 16:09:19 (5358): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-09 16:09:19 (5358): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-09 16:09:19 (5358): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-09 16:09:19 (5358): Guest Log: 102  3781  102  3781    0     0   1324      0  0:00:02  0:00:02 --:--:-- 47860
2019-05-09 16:09:22 (5358): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-09 16:09:22 (5358): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-09 16:09:22 (5358): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-09 16:09:22 (5358): Guest Log: 102  3781  102  3781    0     0   1241      0  0:00:03  0:00:03 --:--:-- 46679
2019-05-09 16:09:25 (5358): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-09 16:09:25 (5358): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-09 16:09:25 (5358): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-09 16:09:25 (5358): Guest Log: 157   157  157   157    0     0     52      0  0:00:03  0:00:02  0:00:01  2093
2019-05-09 16:09:25 (5358): Guest Log: #################################################################
2019-05-09 16:09:25 (5358): Guest Log: # If you used AutoDock Vina in your work, please cite:          #
2019-05-09 16:09:25 (5358): Guest Log: #                                                               #
2019-05-09 16:09:25 (5358): Guest Log: # O. Trott, A. J. Olson,                                        #
2019-05-09 16:09:25 (5358): Guest Log: # AutoDock Vina: improving the speed and accuracy of docking    #
2019-05-09 16:09:25 (5358): Guest Log: # with a new scoring function, efficient optimization and       #
2019-05-09 16:09:25 (5358): Guest Log: # multithreading, Journal of Computational Chemistry 31 (2010)  #
2019-05-09 16:09:25 (5358): Guest Log: # 455-461                                                       #
2019-05-09 16:09:25 (5358): Guest Log: #                                                               #
2019-05-09 16:09:25 (5358): Guest Log: # DOI 10.1002/jcc.21334                                         #
2019-05-09 16:09:25 (5358): Guest Log: #                                                               #
2019-05-09 16:09:25 (5358): Guest Log: # Please see http://vina.scripps.edu for more information.      #
2019-05-09 16:09:25 (5358): Guest Log: #################################################################
2019-05-09 16:09:25 (5358): Guest Log: Reading input ... done.
2019-05-09 16:09:25 (5358): Guest Log: Setting up the scoring function ... done.
2019-05-09 16:09:27 (5358): Guest Log: Analyzing the binding site ... done.
2019-05-09 16:09:27 (5358): Guest Log: Using random seed: -2078991500
2019-05-09 16:09:27 (5358): Guest Log: Performing search ... 
2019-05-09 16:09:27 (5358): Guest Log: 0%   10   20   30   40   50   60   70   80   90   100%
2019-05-09 16:09:27 (5358): Guest Log: |----|----|----|----|----|----|----|----|----|----|
2019-05-09 16:13:52 (5358): Guest Log: ***************************************************
2019-05-09 16:13:52 (5358): Guest Log: done.
2019-05-09 16:13:52 (5358): Guest Log: Refining results ... done.
2019-05-09 16:13:52 (5358): Guest Log: mode |   affinity | dist from best mode
2019-05-09 16:13:52 (5358): Guest Log:      | (kcal/mol) | rmsd l.b.| rmsd u.b.
2019-05-09 16:13:52 (5358): Guest Log: -----+------------+----------+----------
2019-05-09 16:13:52 (5358): Guest Log:    1        -10.5      0.000      0.000
2019-05-09 16:13:52 (5358): Guest Log:    2        -10.4      2.395      3.388
2019-05-09 16:13:52 (5358): Guest Log:    3        -10.2      1.353      1.830
2019-05-09 16:13:52 (5358): Guest Log:    4        -10.2      2.235      3.743
2019-05-09 16:13:52 (5358): Guest Log:    5        -10.1      2.222      3.351
2019-05-09 16:13:52 (5358): Guest Log:    6         -9.9      1.471      2.344
2019-05-09 16:13:52 (5358): Guest Log:    7         -9.4      1.747      2.597
2019-05-09 16:13:52 (5358): Guest Log:    8         -9.3      2.311      3.858
2019-05-09 16:13:52 (5358): Guest Log:    9         -9.2      1.623      2.397
2019-05-09 16:13:52 (5358): Guest Log: Writing output ... done.
2019-05-09 16:13:53 (5358): Guest Log: Postrun commands...
2019-05-09 16:13:53 (5358): Guest Log: boinc_app exited (0)
2019-05-09 16:13:53 (5358): Guest Log: Saving results...
2019-05-09 16:13:53 (5358): Guest Log: 1OPK.pdbqt
2019-05-09 16:13:53 (5358): Guest Log: ZINC00000567.pdbqt
2019-05-09 16:13:53 (5358): Guest Log: all.pdbqt
2019-05-09 16:13:53 (5358): Guest Log: ligand.pdbqt
2019-05-09 16:13:53 (5358): Guest Log: ligand_experiment.pdbqt
2019-05-09 16:13:53 (5358): Guest Log: protein.pdbqt
2019-05-09 16:13:53 (5358): VM Completion File Detected.
2019-05-09 16:13:53 (5358): Powering off VM.
2019-05-09 16:13:54 (5358): Successfully stopped VM.
2019-05-09 16:13:54 (5358): Deregistering VM. (boinc_ed23f7966bcad020, slot#50)
2019-05-09 16:13:54 (5358): Removing network bandwidth throttle group from VM.
2019-05-09 16:13:54 (5358): Removing storage controller(s) from VM.
2019-05-09 16:13:54 (5358): Removing VM from VirtualBox.
2019-05-09 16:13:54 (5358): Removing virtual ISO 9660 disk from VirtualBox.
16:13:59 (5358): called boinc_finish(0)

</stderr_txt>
]]>