Task 223351

Name boinc2docker_26721_1556836100.195920_3
Workunit 76095
Created 8 May 2019, 7:39:42 UTC
Sent 8 May 2019, 7:41:26 UTC
Report deadline 15 May 2019, 7:41:26 UTC
Received 8 May 2019, 8:09:29 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 223
Run time 2 min 47 sec
CPU time 2 min 47 sec
Validate state Valid
Credit 20.95
Device peak FLOPS 13.55 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 4,141.60 MB
Peak swap size 12,680.57 MB
Peak disk usage 449.81 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
:00:00.010891 main     Package type: LINUX_64BITS_GENERIC
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.010588 main     OS Product: Linux
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.010723 main     OS Release: 4.1.19-boot2docker
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.010810 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.010888 main     Executable: /sbin/VBoxService
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.027039 main     5.0.16 r105871 started. Verbose level = 0
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.010890 main     Process ID: 827
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.032000 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.032102 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.010891 main     Package type: LINUX_64BITS_GENERIC
2019-05-08 10:07:14 (8104): Guest Log: 00:00:00.027039 main     5.0.16 r105871 started. Verbose level = 0
2019-05-08 10:07:14 (8104): Guest Log: Mounting BOINC shared/...
2019-05-08 10:07:14 (8104): Guest Log: -------------------
2019-05-08 10:07:14 (8104): Guest Log: Wed May  8 08:07:14 UTC 2019
2019-05-08 10:07:19 (8104): Guest Log: 00:00:05.036810 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-05-08 10:07:19 (8104): Guest Log: Wed May  8 08:07:19 UTC 2019
2019-05-08 10:07:19 (8104): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-05-08 10:07:19 (8104): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-05-08 10:07:19 (8104): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-05-08 10:07:19 (8104): Guest Log:        valid_lft forever preferred_lft forever
2019-05-08 10:07:19 (8104): Guest Log:     inet6 ::1/128 scope host 
2019-05-08 10:07:19 (8104): Guest Log:        valid_lft forever preferred_lft forever
2019-05-08 10:07:19 (8104): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-05-08 10:07:19 (8104): Guest Log:     link/ether de:7f:ff:15:8b:f0 brd ff:ff:ff:ff:ff:ff
2019-05-08 10:07:19 (8104): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-05-08 10:07:19 (8104): Guest Log:     link/ether 08:00:27:63:92:f7 brd ff:ff:ff:ff:ff:ff
2019-05-08 10:07:19 (8104): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-05-08 10:07:19 (8104): Guest Log:        valid_lft forever preferred_lft forever
2019-05-08 10:07:20 (8104): Guest Log:     inet6 fe80::a00:27ff:fe63:92f7/64 scope link 
2019-05-08 10:07:20 (8104): Guest Log:        valid_lft forever preferred_lft forever
2019-05-08 10:07:20 (8104): Guest Log: -------------------
2019-05-08 10:07:20 (8104): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-05-08 10:07:20 (8104): Guest Log: Waiting for Docker daemon to start...
2019-05-08 10:07:21 (8104): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-05-08 10:07:21 (8104): Guest Log: Running boinc_app...
2019-05-08 10:07:21 (8104): Guest Log: Importing Docker image from BOINC...
2019-05-08 10:07:24 (8104): Guest Log: 00:00:10.037614 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-05-08 10:08:48 (8104): Guest Log: Prerun diagnostics...
2019-05-08 10:08:48 (8104): Guest Log: REPOSITORY           TAG                 IMAGE ID            CREATED             SIZE
2019-05-08 10:08:48 (8104): Guest Log: carlosred/bedtools   latest              4ddcf547f34b        11 months ago       1.192 GB
2019-05-08 10:08:48 (8104): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-05-08 10:08:48 (8104): Guest Log: 1.2G	/var/lib/docker
2019-05-08 10:08:48 (8104): Guest Log:               total        used        free      shared  buff/cache   available
2019-05-08 10:08:48 (8104): Guest Log: Mem:           5096          61        3591        1376        1443        3599
2019-05-08 10:08:48 (8104): Guest Log: Swap:          1222           0        1222
2019-05-08 10:08:48 (8104): Guest Log: Prerun commands...
2019-05-08 10:08:48 (8104): Guest Log: Running... 
2019-05-08 10:08:49 (8104): Guest Log: --2019-05-08 08:08:49--  http://boinc.tacc.utexas.edu:5060/boincserver/v2/reef/carlos.red@utexas.edu/cpg.bed
2019-05-08 10:08:50 (8104): Guest Log: Resolving boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)... 129.114.60.78
2019-05-08 10:08:50 (8104): Guest Log: Connecting to boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)|129.114.60.78|:5060... connected.
2019-05-08 10:08:50 (8104): Guest Log: HTTP request sent, awaiting response... 200 OK
2019-05-08 10:08:50 (8104): Guest Log: Length: 921494 (900K) [text/html]
2019-05-08 10:08:50 (8104): Guest Log: Saving to: 'cpg.bed'
2019-05-08 10:08:50 (8104): Guest Log:      0K .......... .......... .......... .......... ..........  5%  199K 4s
2019-05-08 10:08:50 (8104): Guest Log:     50K .......... .......... .......... .......... .......... 11%  405K 3s
2019-05-08 10:08:50 (8104): Guest Log:    100K .......... .......... .......... .......... .......... 16% 6.28M 2s
2019-05-08 10:08:50 (8104): Guest Log:    150K .......... .......... .......... .......... .......... 22% 1.83M 1s
2019-05-08 10:08:50 (8104): Guest Log:    200K .......... .......... .......... .......... .......... 27%  496K 1s
2019-05-08 10:08:50 (8104): Guest Log:    250K .......... .......... .......... .......... .......... 33% 5.24M 1s
2019-05-08 10:08:51 (8104): Guest Log:    300K .......... .......... .......... .......... .......... 38%  452K 1s
2019-05-08 10:08:51 (8104): Guest Log:    350K .......... .......... .......... .......... .......... 44% 1.36M 1s
2019-05-08 10:08:51 (8104): Guest Log:    400K .......... .......... .......... .......... .......... 50% 2.10M 1s
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2019-05-08 10:08:51 (8104): Guest Log:    500K .......... .......... .......... .......... .......... 61%  141M 0s
2019-05-08 10:08:51 (8104): Guest Log:    550K .......... .......... .......... .......... .......... 66%  674K 0s
2019-05-08 10:08:51 (8104): Guest Log:    600K .......... .......... .......... .......... .......... 72%  153M 0s
2019-05-08 10:08:51 (8104): Guest Log:    650K .......... .......... .......... .......... .......... 77%  264M 0s
2019-05-08 10:08:51 (8104): Guest Log:    700K .......... .......... .......... .......... .......... 83%  927K 0s
2019-05-08 10:08:51 (8104): Guest Log:    750K .......... .......... .......... .......... .......... 88% 6.62M 0s
2019-05-08 10:08:51 (8104): Guest Log:    800K .......... .......... .......... .......... .......... 94%  589K 0s
2019-05-08 10:08:51 (8104): Guest Log:    850K .......... .......... .......... .......... ......... 100% 85.3M=0.9s
2019-05-08 10:08:51 (8104): Guest Log: 2019-05-08 08:08:51 (987 KB/s) - 'cpg.bed' saved [921494/921494]
2019-05-08 10:08:51 (8104): Guest Log: --2019-05-08 08:08:51--  http://boinc.tacc.utexas.edu:5060/boincserver/v2/reef/carlos.red@utexas.edu/exons.bed
2019-05-08 10:08:51 (8104): Guest Log: Resolving boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)... 129.114.60.78
2019-05-08 10:08:51 (8104): Guest Log: Connecting to boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)|129.114.60.78|:5060... connected.
2019-05-08 10:08:52 (8104): Guest Log: HTTP request sent, awaiting response... 200 OK
2019-05-08 10:08:52 (8104): Guest Log: Length: 30191881 (29M) [text/html]
2019-05-08 10:08:52 (8104): Guest Log: Saving to: 'exons.bed'
2019-05-08 10:08:52 (8104): Guest Log:      0K .......... .......... .......... .......... ..........  0%  194K 2m32s
2019-05-08 10:08:52 (8104): Guest Log:     50K .......... .......... .......... .......... ..........  0%  433K 1m50s
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2019-05-08 10:08:53 (8104): Guest Log:   1950K .......... .......... .......... .......... ..........  6% 29.9M 17s
2019-05-08 10:08:53 (8104): Guest Log:   2000K .......... .......... .......... .......... ..........  6% 20.5M 17s
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2019-05-08 10:09:05 (8104): Guest Log:  28250K .......... .......... .......... .......... .......... 95%  271M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28300K .......... .......... .......... .......... .......... 96%  280M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28350K .......... .......... .......... .......... .......... 96%  865K 0s
2019-05-08 10:09:05 (8104): Guest Log:  28400K .......... .......... .......... .......... .......... 96% 7.07M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28450K .......... .......... .......... .......... .......... 96%  645K 0s
2019-05-08 10:09:05 (8104): Guest Log:  28500K .......... .......... .......... .......... .......... 96% 3.97M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28550K .......... .......... .......... .......... .......... 97% 6.78M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28600K .......... .......... .......... .......... .......... 97%  214M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28650K .......... .......... .......... .......... .......... 97%  240M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28700K .......... .......... .......... .......... .......... 97% 3.18M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28750K .......... .......... .......... .......... .......... 97% 3.17M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28800K .......... .......... .......... .......... .......... 97% 1.58M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28850K .......... .......... .......... .......... .......... 98% 1.41M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28900K .......... .......... .......... .......... .......... 98% 1.27M 0s
2019-05-08 10:09:05 (8104): Guest Log:  28950K .......... .......... .......... .......... .......... 98% 11.0M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29000K .......... .......... .......... .......... .......... 98% 8.96M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29050K .......... .......... .......... .......... .......... 98%  601K 0s
2019-05-08 10:09:05 (8104): Guest Log:  29100K .......... .......... .......... .......... .......... 98% 1.08M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29150K .......... .......... .......... .......... .......... 99% 38.3M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29200K .......... .......... .......... .......... .......... 99% 58.3M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29250K .......... .......... .......... .......... .......... 99% 44.2M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29300K .......... .......... .......... .......... .......... 99% 66.9M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29350K .......... .......... .......... .......... .......... 99% 51.3M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29400K .......... .......... .......... .......... .......... 99% 3.22M 0s
2019-05-08 10:09:05 (8104): Guest Log:  29450K .......... .......... .......... ....                 100%  267M=12s
2019-05-08 10:09:05 (8104): Guest Log: 2019-05-08 08:09:03 (2.46 MB/s) - 'exons.bed' saved [30191881/30191881]
2019-05-08 10:09:06 (8104): Guest Log: Postrun commands...
2019-05-08 10:09:06 (8104): Guest Log: boinc_app exited (0)
2019-05-08 10:09:06 (8104): Guest Log: Saving results...
2019-05-08 10:09:07 (8104): Guest Log: bed_test.txt
2019-05-08 10:09:07 (8104): VM Completion File Detected.
2019-05-08 10:09:07 (8104): Powering off VM.
2019-05-08 10:09:08 (8104): Successfully stopped VM.
2019-05-08 10:09:08 (8104): Deregistering VM. (boinc_40bd11f6ae1d8ed1, slot#9)
2019-05-08 10:09:08 (8104): Removing network bandwidth throttle group from VM.
2019-05-08 10:09:09 (8104): Removing storage controller(s) from VM.
2019-05-08 10:09:09 (8104): Removing VM from VirtualBox.
2019-05-08 10:09:09 (8104): Removing virtual ISO 9660 disk from VirtualBox.
10:09:14 (8104): called boinc_finish(0)

</stderr_txt>
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