Task 222025

Name boinc2docker_3442_1556842127.976861_3
Workunit 87418
Created 4 May 2019, 15:04:47 UTC
Sent 4 May 2019, 15:05:03 UTC
Report deadline 11 May 2019, 15:05:03 UTC
Received 4 May 2019, 17:56:39 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 284
Run time 1 min 5 sec
CPU time 38 sec
Validate state Valid
Credit 5.10
Device peak FLOPS 14.99 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 100.18 MB
Peak swap size 3,595.14 MB
Peak disk usage 259.06 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-04 12:55:27 (14307): vboxwrapper (7.7.26197): starting
2019-05-04 12:55:27 (14307): Feature: Checkpoint interval offset (490 seconds)
2019-05-04 12:55:27 (14307): Detected: VirtualBox VboxManage Interface (Version: 6.0.6)
2019-05-04 12:55:27 (14307): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-04 12:55:27 (14307): Create VM. (boinc_6469de5e814cf0e7, slot#35)
2019-05-04 12:55:27 (14307): Updating drive controller type and model for desired configuration.
2019-05-04 12:55:27 (14307): Setting Memory Size for VM. (2697MB)
2019-05-04 12:55:27 (14307): Setting CPU Count for VM. (4)
2019-05-04 12:55:27 (14307): Setting Chipset Options for VM.
2019-05-04 12:55:27 (14307): Setting Boot Options for VM.
2019-05-04 12:55:27 (14307): Setting Network Configuration for NAT.
2019-05-04 12:55:27 (14307): Enabling VM Network Access.
2019-05-04 12:55:27 (14307): Disabling USB Support for VM.
2019-05-04 12:55:28 (14307): Disabling COM Port Support for VM.
2019-05-04 12:55:28 (14307): Disabling LPT Port Support for VM.
2019-05-04 12:55:28 (14307): Disabling Audio Support for VM.
2019-05-04 12:55:28 (14307): Disabling Clipboard Support for VM.
2019-05-04 12:55:28 (14307): Disabling Drag and Drop Support for VM.
2019-05-04 12:55:28 (14307): Adding storage controller(s) to VM.
2019-05-04 12:55:28 (14307): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-04 12:55:28 (14307): Adding VirtualBox Guest Additions to VM.
2019-05-04 12:55:28 (14307): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-04 12:55:28 (14307): Enabling shared directory for VM.
2019-05-04 12:55:28 (14307): Starting VM. (boinc_6469de5e814cf0e7, slot#35)
2019-05-04 12:55:30 (14307): Successfully started VM. (PID = '15605')
2019-05-04 12:55:30 (14307): Reporting VM Process ID to BOINC.
2019-05-04 12:55:30 (14307): Guest Log: BIOS: VirtualBox 6.0.6
2019-05-04 12:55:30 (14307): Guest Log: CPUID EDX: 0x178bfbff
2019-05-04 12:55:30 (14307): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-04 12:55:30 (14307): Preference change detected
2019-05-04 12:55:30 (14307): Setting CPU throttle for VM. (100%)
2019-05-04 12:55:30 (14307): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-04 12:55:32 (14307): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-05-04 12:55:32 (14307): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-05-04 12:55:32 (14307): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-05-04 12:55:32 (14307): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-05-04 12:55:32 (14307): Guest Log: BIOS: Booting from CD-ROM...
2019-05-04 12:55:32 (14307): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-05-04 12:55:32 (14307): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-05-04 12:55:41 (14307): Guest Log: net.ipv4.ip_forward = 1
2019-05-04 12:55:41 (14307): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-05-04 12:55:41 (14307): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-05-04 12:55:41 (14307): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-05-04 12:55:41 (14307): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-05-04 12:55:41 (14307): Guest Log: Segmentation fault
2019-05-04 12:55:41 (14307): Guest Log: automount ...
2019-05-04 12:55:41 (14307): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-05-04 12:55:41 (14307): Guest Log: automount over.
2019-05-04 12:55:41 (14307): Guest Log: Setting hostname to boot2docker Done.
2019-05-04 12:55:41 (14307): Guest Log: Sat May  4 12:55:39 UTC 2019 dhcp -------------------------------
2019-05-04 12:55:41 (14307): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-05-04 12:55:41 (14307): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-05-04 12:55:46 (14307): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1104)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00 (1337)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1338)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1339)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1340)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1341)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1342)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1343)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1344)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1345)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1346)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1347)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1348)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1349)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1350)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1351)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1352)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1353)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1354)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1355)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1356)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1357)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1358)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1359)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1360)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1361)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1362)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1363)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1364)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1365)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1366)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1367)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1368)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1369)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1370)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1371)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1372)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1373)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1375)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1376)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1377)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1378)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1379)
2019-05-04 12:55:46 (14307): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1380)
2019-05-04 12:55:47 (14307): Guest Log: Sat May  4 12:55:45 UTC 2019 dhcp -------------------------------
2019-05-04 12:55:47 (14307): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000127 main     Log opened 2019-05-04T12:55:45.457552000Z
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000303 main     OS Product: Linux
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000359 main     OS Release: 4.1.19-boot2docker
2019-05-04 12:55:47 (14307): Guest Log: V00:00:00.000422 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-04 12:55:47 (14307): Guest Log: oxS00:00:00.000467 main     Executable: /sbin/VBoxService
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000469 main     Process ID: 849
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000470 main     Package type: LINUX_64BITS_GENERIC
2019-05-04 12:55:47 (14307): Guest Log: vice 5.0.16 r105871 (verbosity: 0) linux.amd00:00:00.001679 main     5.0.166r105871 started. Verbose level = 0
2019-05-04 12:55:47 (14307): Guest Log:  (Mar  4 2016 17:38:55) release log
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000127 main     Log opened 2019-05-04T12:55:45.457552000Z
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.004739 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.004872 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000303 main     OS Product: Linux
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000359 main     OS Release: 4.1.19-boot2docker
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000422 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000467 main     Executable: /sbin/VBoxService
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000469 main     Process ID: 849
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.000470 main     Package type: LINUX_64BITS_GENERIC
2019-05-04 12:55:47 (14307): Guest Log: 00:00:00.001679 main     5.0.16 r105871 started. Verbose level = 0
2019-05-04 12:55:48 (14307): Guest Log: Mounting BOINC shared/...
2019-05-04 12:55:48 (14307): Guest Log: -------------------
2019-05-04 12:55:48 (14307): Guest Log: Sat May  4 17:55:47 UTC 2019
2019-05-04 12:55:53 (14307): Guest Log: 00:00:05.008048 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-05-04 12:55:53 (14307): Guest Log: Sat May  4 17:55:52 UTC 2019
2019-05-04 12:55:53 (14307): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-05-04 12:55:53 (14307): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-05-04 12:55:53 (14307): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-05-04 12:55:53 (14307): Guest Log:        valid_lft forever preferred_lft forever
2019-05-04 12:55:53 (14307): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-05-04 12:55:53 (14307): Guest Log:     link/ether 0e:98:bd:d7:42:57 brd ff:ff:ff:ff:ff:ff
2019-05-04 12:55:53 (14307): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-05-04 12:55:53 (14307): Guest Log:     link/ether 08:00:27:ad:1e:74 brd ff:ff:ff:ff:ff:ff
2019-05-04 12:55:53 (14307): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-05-04 12:55:53 (14307): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-05-04 12:55:53 (14307): Guest Log: Waiting for Docker daemon to start...
2019-05-04 12:55:54 (14307): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-05-04 12:55:54 (14307): Guest Log: Running boinc_app...
2019-05-04 12:55:54 (14307): Guest Log: Importing Docker image from BOINC...
2019-05-04 12:55:58 (14307): Guest Log: 00:00:10.012224 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-05-04 12:56:13 (14307): Guest Log: Prerun diagnostics...
2019-05-04 12:56:13 (14307): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-05-04 12:56:13 (14307): Guest Log: carlosred/htseq     latest              d0e2c46e8338        10 months ago       549.3 MB
2019-05-04 12:56:13 (14307): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-05-04 12:56:13 (14307): Guest Log: 557.0M	/var/lib/docker
2019-05-04 12:56:13 (14307): Guest Log:               total        used        free      shared  buff/cache   available
2019-05-04 12:56:13 (14307): Guest Log: Mem:           2636          49        1823         721         763        1825
2019-05-04 12:56:13 (14307): Guest Log: Swap:           608           0         608
2019-05-04 12:56:13 (14307): Guest Log: Prerun commands...
2019-05-04 12:56:13 (14307): Guest Log: Running... 
2019-05-04 12:56:14 (14307): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-04 12:56:14 (14307): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-04 12:56:18 (14307): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-04 12:56:18 (14307): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:04 --:--:--     0
2019-05-04 12:56:18 (14307): Guest Log: 100   364  100   364    0     0     78      0  0:00:04  0:00:04 --:--:--    78
2019-05-04 12:56:18 (14307): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-05-04 12:56:18 (14307): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-05-04 12:56:22 (14307): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-05-04 12:56:22 (14307): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-05-04 12:56:22 (14307): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-05-04 12:56:22 (14307): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0
2019-05-04 12:56:22 (14307): Guest Log: 100 17993  100 17993    0     0   4781      0  0:00:03  0:00:03 --:--:--  4782
2019-05-04 12:56:22 (14307): Guest Log: 77 GFF lines processed.
2019-05-04 12:56:22 (14307): Guest Log: 2 SAM alignments  processed.
2019-05-04 12:56:23 (14307): Guest Log: Postrun commands...
2019-05-04 12:56:23 (14307): Guest Log: boinc_app exited (0)
2019-05-04 12:56:23 (14307): Guest Log: Saving results...
2019-05-04 12:56:23 (14307): Guest Log: test_htseq.txt
2019-05-04 12:56:23 (14307): VM Completion File Detected.
2019-05-04 12:56:23 (14307): Powering off VM.
2019-05-04 12:56:24 (14307): Successfully stopped VM.
2019-05-04 12:56:24 (14307): Deregistering VM. (boinc_6469de5e814cf0e7, slot#35)
2019-05-04 12:56:24 (14307): Removing network bandwidth throttle group from VM.
2019-05-04 12:56:24 (14307): Removing storage controller(s) from VM.
2019-05-04 12:56:24 (14307): Removing VM from VirtualBox.
2019-05-04 12:56:24 (14307): Removing virtual ISO 9660 disk from VirtualBox.
12:56:29 (14307): called boinc_finish(0)

</stderr_txt>
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