Task 221915

Name boinc2docker_7084_1556846963.749092_2
Workunit 98409
Created 4 May 2019, 4:56:37 UTC
Sent 4 May 2019, 4:56:52 UTC
Report deadline 11 May 2019, 4:56:52 UTC
Received 4 May 2019, 12:29:50 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 9
Run time 1 min 17 sec
CPU time
Validate state Valid
Credit 6.02
Device peak FLOPS 16.43 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 78.65 MB
Peak swap size 107.77 MB
Peak disk usage 340.70 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-04 08:28:53 (23084): vboxwrapper (7.9.26200): starting
2019-05-04 08:28:53 (23084): Feature: Checkpoint interval offset (181 seconds)
2019-05-04 08:28:53 (23084): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-05-04 08:28:53 (23084): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-04 08:28:53 (23084): Create VM. (boinc_65167ef8dc45b6b2, slot#21)
2019-05-04 08:28:53 (23084): Updating drive controller type and model for desired configuration.
2019-05-04 08:28:53 (23084): Setting Memory Size for VM. (3534MB)
2019-05-04 08:28:53 (23084): Setting CPU Count for VM. (4)
2019-05-04 08:28:53 (23084): Setting Chipset Options for VM.
2019-05-04 08:28:53 (23084): Setting Boot Options for VM.
2019-05-04 08:28:53 (23084): Enabling VM Network Access.
2019-05-04 08:28:53 (23084): Setting Network Configuration for NAT.
2019-05-04 08:28:53 (23084): Disabling USB Support for VM.
2019-05-04 08:28:53 (23084): Disabling COM Port Support for VM.
2019-05-04 08:28:53 (23084): Disabling LPT Port Support for VM.
2019-05-04 08:28:53 (23084): Disabling Audio Support for VM.
2019-05-04 08:28:53 (23084): Disabling Clipboard Support for VM.
2019-05-04 08:28:53 (23084): Disabling Drag and Drop Support for VM.
2019-05-04 08:28:53 (23084): Adding storage controller(s) to VM.
2019-05-04 08:28:53 (23084): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-04 08:28:53 (23084): Adding VirtualBox Guest Additions to VM.
2019-05-04 08:28:53 (23084): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-04 08:28:53 (23084): Enabling shared directory for VM.
2019-05-04 08:28:53 (23084): Starting VM. (boinc_65167ef8dc45b6b2, slot#21)
2019-05-04 08:29:01 (23084): Guest Log: BIOS: VirtualBox 5.2.8

2019-05-04 08:29:01 (23084): Guest Log: CPUID EDX: 0x178bfbff

2019-05-04 08:29:01 (23084): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-05-04 08:29:01 (23084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-05-04 08:29:01 (23084): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-05-04 08:29:01 (23084): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-05-04 08:29:01 (23084): Guest Log: BIOS: Booting from CD-ROM...

2019-05-04 08:29:01 (23084): Successfully started VM. (PID = '21124')
2019-05-04 08:29:01 (23084): Reporting VM Process ID to BOINC.
2019-05-04 08:29:06 (23084): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-05-04 08:29:06 (23084): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-05-04 08:29:06 (23084): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-04 08:29:11 (23084): Guest Log: net.ipv4.ip_forward = 1

2019-05-04 08:29:11 (23084): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-05-04 08:29:11 (23084): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-04 08:29:11 (23084): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-05-04 08:29:11 (23084): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-04 08:29:11 (23084): Guest Log: Segmentation fault

2019-05-04 08:29:11 (23084): Guest Log: automount ...

2019-05-04 08:29:11 (23084): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-05-04 08:29:11 (23084): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-05-04 08:29:11 (23084): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-05-04 08:29:16 (23084): Guest Log: automount over.

2019-05-04 08:29:16 (23084): Guest Log: Setting hostname to boot2docker Done.

2019-05-04 08:29:16 (23084): Guest Log: Sat May  4 08:29:13 UTC 2019 dhcp -------------------------------

2019-05-04 08:29:16 (23084): Preference change detected
2019-05-04 08:29:16 (23084): Setting CPU throttle for VM. (100%)
2019-05-04 08:29:17 (23084): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-04 08:29:22 (23084): Guest Log: Sat May  4 08:29:17 UTC 2019 dhcp -------------------------------

2019-05-04 08:29:22 (23084): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.000055 main     Log opened 2019-05-04T08:29:17.430313000Z

2019-05-04 08:29:22 (23084): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.000055 main     Log opened 2019-05-04T08:29:17.430313000Z

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.002645 main     OS Product: Linux

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.002645 main     OS Product: Linux

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.003501 main     OS Release: 4.1.19-boot2docker

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.003501 main     OS Release: 4.1.19-boot2docker

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.004445 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.004445 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.005590 main     Executable: /sbin/VBoxService

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.005591 main     Process ID: 960

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.005592 main     Package type: LINUX_64BITS_GENERIC

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.005590 main     Executable: /sbin/VBoxService

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.005591 main     Process ID: 960

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.005592 main     Package type: LINUX_64BITS_GENERIC

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.009159 main     5.0.16 r105871 started. Verbose level = 0

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.009159 main     5.0.16 r105871 started. Verbose level = 0

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.011584 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-05-04 08:29:22 (23084): Guest Log: 00:00:00.011622 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-05-04 08:29:22 (23084): Guest Log: Mounting BOINC shared/...

2019-05-04 08:29:22 (23084): Guest Log: -------------------

2019-05-04 08:29:22 (23084): Guest Log: Sat May  4 12:29:20 UTC 2019

2019-05-04 08:29:27 (23084): Guest Log: 00:00:05.013493 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-05-04 08:29:27 (23084): Guest Log: Sat May  4 12:28:55 UTC 2019

2019-05-04 08:29:27 (23084): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-05-04 08:29:27 (23084): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-05-04 08:29:27 (23084): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-05-04 08:29:27 (23084): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 08:29:27 (23084): Guest Log:     inet6 ::1/128 scope host 

2019-05-04 08:29:27 (23084): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 08:29:27 (23084): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-05-04 08:29:27 (23084): Guest Log:     link/ether 4a:76:1e:1c:ee:f6 brd ff:ff:ff:ff:ff:ff

2019-05-04 08:29:27 (23084): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-05-04 08:29:27 (23084): Guest Log:     link/ether 08:00:27:42:ac:a0 brd ff:ff:ff:ff:ff:ff

2019-05-04 08:29:27 (23084): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-05-04 08:29:27 (23084): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 08:29:27 (23084): Guest Log:     inet6 fe80::a00:27ff:fe42:aca0/64 scope link 

2019-05-04 08:29:27 (23084): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 08:29:27 (23084): Guest Log: -------------------

2019-05-04 08:29:27 (23084): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-05-04 08:29:27 (23084): Guest Log: Waiting for Docker daemon to start...

2019-05-04 08:29:27 (23084): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-04 08:29:27 (23084): Guest Log: Running boinc_app...

2019-05-04 08:29:27 (23084): Guest Log: Importing Docker image from BOINC...

2019-05-04 08:29:32 (23084): Guest Log: 00:00:10.014203 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-05-04 08:29:47 (23084): Guest Log: Prerun diagnostics...

2019-05-04 08:29:47 (23084): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-04 08:29:47 (23084): Guest Log: carlosred/bowtie    built               4beacb78841d        10 months ago       758.7 MB

2019-05-04 08:29:47 (23084): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-05-04 08:29:47 (23084): Guest Log: 753.8M	/var/lib/docker

2019-05-04 08:29:47 (23084): Guest Log:               total        used        free      shared  buff/cache   available

2019-05-04 08:29:47 (23084): Guest Log: Mem:           3461          50        2450         917         960        2450

2019-05-04 08:29:47 (23084): Guest Log: Swap:           813           0         813

2019-05-04 08:29:47 (23084): Guest Log: Prerun commands...

2019-05-04 08:29:47 (23084): Guest Log: Running... 

2019-05-04 08:29:47 (23084): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-04 08:29:47 (23084): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-04 08:29:57 (23084): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-04 08:29:57 (23084): Guest Log:   4 14.4M    4  661k    0     0   681k      0  0:00:21 --:--:--  0:00:21  681k

2019-05-04 08:29:57 (23084): Guest Log:  16 14.4M   16 2429k    0     0  1232k      0  0:00:11  0:00:01  0:00:10 1232k

2019-05-04 08:29:57 (23084): Guest Log:  32 14.4M   32 4876k    0     0  1641k      0  0:00:09  0:00:02  0:00:07 1641k

2019-05-04 08:29:57 (23084): Guest Log:  47 14.4M   47 6983k    0     0  1758k      0  0:00:08  0:00:03  0:00:05 1758k

2019-05-04 08:29:57 (23084): Guest Log:  63 14.4M   63 9445k    0     0  1900k      0  0:00:07  0:00:04  0:00:03 1900k

2019-05-04 08:29:57 (23084): Guest Log:  79 14.4M   79 11.4M    0     0  1961k      0  0:00:07  0:00:05  0:00:02 2210k

2019-05-04 08:29:57 (23084): Guest Log:  94 14.4M   94 13.6M    0     0  2003k      0  0:00:07  0:00:06  0:00:01 2307k

2019-05-04 08:29:57 (23084): Guest Log: 100 14.4M  100 14.4M    0     0  1985k      0  0:00:07  0:00:07 --:--:-- 2214k

2019-05-04 08:29:57 (23084): Guest Log: Archive:  s_cerevisiae.ebwt.zip

2019-05-04 08:29:57 (23084): Guest Log:   inflating: s_cerevisiae.1.ebwt     

2019-05-04 08:29:57 (23084): Guest Log:   inflating: s_cerevisiae.2.ebwt     

2019-05-04 08:29:57 (23084): Guest Log:   inflating: s_cerevisiae.3.ebwt     

2019-05-04 08:29:57 (23084): Guest Log:   inflating: s_cerevisiae.4.ebwt     

2019-05-04 08:29:57 (23084): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  

2019-05-04 08:29:57 (23084): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  

2019-05-04 08:29:57 (23084): Guest Log:   inflating: make_s_cerevisiae.sh    

2019-05-04 08:29:57 (23084): Guest Log: # reads processed: 1

2019-05-04 08:29:57 (23084): Guest Log: # reads with at least one reported alignment: 1 (100.00%)

2019-05-04 08:29:57 (23084): Guest Log: # reads that failed to align: 0 (0.00%)

2019-05-04 08:29:57 (23084): Guest Log: Reported 1 alignments

2019-05-04 08:29:57 (23084): Guest Log: Postrun commands...

2019-05-04 08:29:57 (23084): Guest Log: boinc_app exited (0)

2019-05-04 08:29:57 (23084): Guest Log: Saving results...

2019-05-04 08:29:57 (23084): Guest Log: make_s_cerevisiae.sh

2019-05-04 08:29:57 (23084): Guest Log: res_bowtie.txt

2019-05-04 08:29:57 (23084): VM Completion File Detected.
2019-05-04 08:29:57 (23084): Powering off VM.
2019-05-04 08:29:58 (23084): Successfully stopped VM.
2019-05-04 08:30:03 (23084): Deregistering VM. (boinc_65167ef8dc45b6b2, slot#21)
2019-05-04 08:30:03 (23084): Removing virtual disk drive(s) from VM.
2019-05-04 08:30:03 (23084): Removing network bandwidth throttle group from VM.
2019-05-04 08:30:03 (23084): Removing storage controller(s) from VM.
2019-05-04 08:30:03 (23084): Removing VM from VirtualBox.
08:30:08 (23084): called boinc_finish(0)

</stderr_txt>
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