Task 221913

Name boinc2docker_6800_1556846961.206780_2
Workunit 98401
Created 4 May 2019, 4:56:37 UTC
Sent 4 May 2019, 4:56:52 UTC
Report deadline 11 May 2019, 4:56:52 UTC
Received 4 May 2019, 12:31:04 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 9
Run time 1 min 13 sec
CPU time
Validate state Valid
Credit 5.87
Device peak FLOPS 16.43 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 78.06 MB
Peak swap size 106.43 MB
Peak disk usage 341.16 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-04 08:30:11 (21716): vboxwrapper (7.9.26200): starting
2019-05-04 08:30:11 (21716): Feature: Checkpoint interval offset (99 seconds)
2019-05-04 08:30:11 (21716): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-05-04 08:30:11 (21716): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-04 08:30:11 (21716): Create VM. (boinc_ab4b95ff1f7bae77, slot#21)
2019-05-04 08:30:11 (21716): Updating drive controller type and model for desired configuration.
2019-05-04 08:30:12 (21716): Setting Memory Size for VM. (3534MB)
2019-05-04 08:30:12 (21716): Setting CPU Count for VM. (4)
2019-05-04 08:30:12 (21716): Setting Chipset Options for VM.
2019-05-04 08:30:12 (21716): Setting Boot Options for VM.
2019-05-04 08:30:12 (21716): Enabling VM Network Access.
2019-05-04 08:30:12 (21716): Setting Network Configuration for NAT.
2019-05-04 08:30:12 (21716): Disabling USB Support for VM.
2019-05-04 08:30:12 (21716): Disabling COM Port Support for VM.
2019-05-04 08:30:12 (21716): Disabling LPT Port Support for VM.
2019-05-04 08:30:12 (21716): Disabling Audio Support for VM.
2019-05-04 08:30:12 (21716): Disabling Clipboard Support for VM.
2019-05-04 08:30:12 (21716): Disabling Drag and Drop Support for VM.
2019-05-04 08:30:12 (21716): Adding storage controller(s) to VM.
2019-05-04 08:30:12 (21716): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-04 08:30:12 (21716): Adding VirtualBox Guest Additions to VM.
2019-05-04 08:30:12 (21716): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-04 08:30:12 (21716): Enabling shared directory for VM.
2019-05-04 08:30:12 (21716): Starting VM. (boinc_ab4b95ff1f7bae77, slot#21)
2019-05-04 08:30:21 (21716): Guest Log: BIOS: VirtualBox 5.2.8

2019-05-04 08:30:21 (21716): Guest Log: CPUID EDX: 0x178bfbff

2019-05-04 08:30:21 (21716): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-05-04 08:30:21 (21716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-05-04 08:30:21 (21716): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-05-04 08:30:21 (21716): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-05-04 08:30:21 (21716): Guest Log: BIOS: Booting from CD-ROM...

2019-05-04 08:30:21 (21716): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-05-04 08:30:21 (21716): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-05-04 08:30:21 (21716): Successfully started VM. (PID = '24260')
2019-05-04 08:30:21 (21716): Reporting VM Process ID to BOINC.
2019-05-04 08:30:26 (21716): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-04 08:30:31 (21716): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-05-04 08:30:31 (21716): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-05-04 08:30:31 (21716): Guest Log: net.ipv4.ip_forward = 1

2019-05-04 08:30:31 (21716): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-05-04 08:30:31 (21716): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-04 08:30:31 (21716): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-05-04 08:30:31 (21716): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-04 08:30:31 (21716): Guest Log: Segmentation fault

2019-05-04 08:30:31 (21716): Guest Log: automount ...

2019-05-04 08:30:31 (21716): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-05-04 08:30:31 (21716): Guest Log: automount over.

2019-05-04 08:30:31 (21716): Guest Log: Setting hostname to boot2docker Done.

2019-05-04 08:30:31 (21716): Guest Log: Sat May  4 08:30:28 UTC 2019 dhcp -------------------------------

2019-05-04 08:30:36 (21716): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-05-04 08:30:36 (21716): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1389)

2019-05-04 08:30:36 (21716): Guest Log: Sat May  4 08:30:34 UTC 2019 dhcp -------------------------------

2019-05-04 08:30:36 (21716): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000056 main     Log opened 2019-05-04T08:30:34.465200000Z

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000142 main     OS Product: Linux

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000168 main     OS Release: 4.1.19-boot2docker

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000201 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-04 08:30:36 (21716): Guest Log: VB00:00:00.000223 main     Executable: /sbin/VBoxService

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000224 main     Process ID: 941o

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000225 main     Package type: LINUX_64BITS_GENERIC

2019-05-04 08:30:36 (21716): Guest Log: xService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000056 main     Log opened 2019-05-04T08:30:34.465200000Z

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000142 main    00:00:00.003203 main     5.0.16 r105871 started. Verbose level = 0

2019-05-04 08:30:36 (21716): Guest Log: OS Product: Linux

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000168 main     OS Release: 4.1.19-boot2docker

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000201 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000223 main     Executable: /sbin/VBoxService

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000224 main     Process ID: 941

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.000225 main     Package type: LINUX_64BITS_GENERIC

2019-05-04 08:30:36 (21716): Guest Log: 00:00:00.003203 main     00:00:00.009475 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-05-04 08:30:36 (21716): Guest Log: .0.100:00:00.009514 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed6

2019-05-04 08:30:36 (21716): Guest Log:  r105871 started. Verbose level = 0

2019-05-04 08:30:36 (21716): Guest Log: Mounting BOINC shared/...

2019-05-04 08:30:36 (21716): Preference change detected
2019-05-04 08:30:36 (21716): Setting CPU throttle for VM. (100%)
2019-05-04 08:30:36 (21716): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-04 08:30:41 (21716): Guest Log: -------------------

2019-05-04 08:30:41 (21716): Guest Log: Sat May  4 12:30:36 UTC 2019

2019-05-04 08:30:41 (21716): Guest Log: 00:00:05.015809 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-05-04 08:30:47 (21716): Guest Log: Sat May  4 12:30:12 UTC 2019

2019-05-04 08:30:47 (21716): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-05-04 08:30:47 (21716): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-05-04 08:30:47 (21716): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-05-04 08:30:47 (21716): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 08:30:47 (21716): Guest Log:     inet6 ::1/128 scope host 

2019-05-04 08:30:47 (21716): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 08:30:47 (21716): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-05-04 08:30:47 (21716): Guest Log:     link/ether 5a:cd:26:30:7a:96 brd ff:ff:ff:ff:ff:ff

2019-05-04 08:30:47 (21716): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-05-04 08:30:47 (21716): Guest Log:     link/ether 08:00:27:9a:e5:f0 brd ff:ff:ff:ff:ff:ff

2019-05-04 08:30:47 (21716): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-05-04 08:30:47 (21716): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 08:30:47 (21716): Guest Log:     inet6 fe80::a00:27ff:fe9a:e5f0/64 scope link 

2019-05-04 08:30:47 (21716): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 08:30:47 (21716): Guest Log: -------------------

2019-05-04 08:30:47 (21716): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-05-04 08:30:47 (21716): Guest Log: Waiting for Docker daemon to start...

2019-05-04 08:30:47 (21716): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-04 08:30:47 (21716): Guest Log: Running boinc_app...

2019-05-04 08:30:47 (21716): Guest Log: Importing Docker image from BOINC...

2019-05-04 08:30:47 (21716): Guest Log: 00:00:10.016702 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-05-04 08:31:07 (21716): Guest Log: Prerun diagnostics...

2019-05-04 08:31:07 (21716): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-04 08:31:07 (21716): Guest Log: carlosred/bowtie    built               4beacb78841d        10 months ago       758.7 MB

2019-05-04 08:31:07 (21716): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-05-04 08:31:07 (21716): Guest Log: 753.8M	/var/lib/docker

2019-05-04 08:31:07 (21716): Guest Log:               total        used        free      shared  buff/cache   available

2019-05-04 08:31:07 (21716): Guest Log: Mem:           3461          58        2443         917         959        2443

2019-05-04 08:31:07 (21716): Guest Log: Swap:           813           0         813

2019-05-04 08:31:07 (21716): Guest Log: Prerun commands...

2019-05-04 08:31:07 (21716): Guest Log: Running... 

2019-05-04 08:31:07 (21716): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-04 08:31:07 (21716): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-04 08:31:12 (21716): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-04 08:31:12 (21716): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-04 08:31:12 (21716): Guest Log:  10 14.4M   10 1486k    0     0  1365k      0  0:00:10  0:00:01  0:00:09 1365k

2019-05-04 08:31:12 (21716): Guest Log:  25 14.4M   25 3722k    0     0  1782k      0  0:00:08  0:00:02  0:00:06 1781k

2019-05-04 08:31:12 (21716): Guest Log:  40 14.4M   40 6020k    0     0  1934k      0  0:00:07  0:00:03  0:00:04 1934k

2019-05-04 08:31:12 (21716): Guest Log:  56 14.4M   56 8409k    0     0  2056k      0  0:00:07  0:00:04  0:00:03 2056k

2019-05-04 08:31:12 (21716): Guest Log:  72 14.4M   72 10.4M    0     0  2106k      0  0:00:07  0:00:05  0:00:02 2160k

2019-05-04 08:31:12 (21716): Guest Log:  87 14.4M   87 12.5M    0     0  2116k      0  0:00:06  0:00:06 --:--:-- 2279k

2019-05-04 08:31:12 (21716): Guest Log: 100 14.4M  100 14.4M    0     0  2141k      0  0:00:06  0:00:06 --:--:-- 2297k

2019-05-04 08:31:12 (21716): Guest Log: Archive:  s_cerevisiae.ebwt.zip

2019-05-04 08:31:12 (21716): Guest Log:   inflating: s_cerevisiae.1.ebwt     

2019-05-04 08:31:12 (21716): Guest Log:   inflating: s_cerevisiae.2.ebwt     

2019-05-04 08:31:12 (21716): Guest Log:   inflating: s_cerevisiae.3.ebwt     

2019-05-04 08:31:12 (21716): Guest Log:   inflating: s_cerevisiae.4.ebwt     

2019-05-04 08:31:12 (21716): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  

2019-05-04 08:31:12 (21716): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  

2019-05-04 08:31:12 (21716): Guest Log:   inflating: make_s_cerevisiae.sh    

2019-05-04 08:31:12 (21716): Guest Log: # reads processed: 1

2019-05-04 08:31:12 (21716): Guest Log: # reads with at least one reported alignment: 1 (100.00%)

2019-05-04 08:31:12 (21716): Guest Log: # reads that failed to align: 0 (0.00%)

2019-05-04 08:31:12 (21716): Guest Log: Reported 1 alignments

2019-05-04 08:31:12 (21716): Guest Log: Postrun commands...

2019-05-04 08:31:12 (21716): Guest Log: boinc_app exited (0)

2019-05-04 08:31:12 (21716): Guest Log: Saving results...

2019-05-04 08:31:12 (21716): Guest Log: make_s_cerevisiae.sh

2019-05-04 08:31:12 (21716): Guest Log: res_bowtie.txt

2019-05-04 08:31:12 (21716): VM Completion File Detected.
2019-05-04 08:31:12 (21716): Powering off VM.
2019-05-04 08:31:13 (21716): Successfully stopped VM.
2019-05-04 08:31:18 (21716): Deregistering VM. (boinc_ab4b95ff1f7bae77, slot#21)
2019-05-04 08:31:18 (21716): Removing virtual disk drive(s) from VM.
2019-05-04 08:31:18 (21716): Removing network bandwidth throttle group from VM.
2019-05-04 08:31:18 (21716): Removing storage controller(s) from VM.
2019-05-04 08:31:18 (21716): Removing VM from VirtualBox.
08:31:23 (21716): called boinc_finish(0)

</stderr_txt>
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