Task 214144

Name boinc2docker_24426_1556846793.222371_1
Workunit 97992
Created 3 May 2019, 1:26:34 UTC
Sent 3 May 2019, 22:39:32 UTC
Report deadline 10 May 2019, 22:39:32 UTC
Received 4 May 2019, 7:25:51 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 374
Run time 2 min 41 sec
CPU time 1 min 42 sec
Validate state Valid
Credit 5.10
Device peak FLOPS 12.57 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 91.25 MB
Peak swap size 106.36 MB
Peak disk usage 340.70 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-04 09:22:50 (106024): vboxwrapper (7.9.26200): starting
2019-05-04 09:22:50 (106024): Status Report: Detected vboxsvc.exe. (PID = '96712')
2019-05-04 09:22:50 (106024): Feature: Checkpoint interval offset (340 seconds)
2019-05-04 09:22:50 (106024): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-05-04 09:22:50 (106024): Detected: Sandbox Configuration Enabled
2019-05-04 09:22:50 (106024): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-04 09:22:50 (106024): Create VM. (boinc_187f4e2edabb603f, slot#2)
2019-05-04 09:22:50 (106024): Updating drive controller type and model for desired configuration.
2019-05-04 09:22:50 (106024): Setting Memory Size for VM. (3534MB)
2019-05-04 09:22:50 (106024): Setting CPU Count for VM. (4)
2019-05-04 09:22:50 (106024): Setting Chipset Options for VM.
2019-05-04 09:22:50 (106024): Setting Boot Options for VM.
2019-05-04 09:22:50 (106024): Enabling VM Network Access.
2019-05-04 09:22:50 (106024): Setting Network Configuration for NAT.
2019-05-04 09:22:50 (106024): Disabling USB Support for VM.
2019-05-04 09:22:50 (106024): Disabling COM Port Support for VM.
2019-05-04 09:22:50 (106024): Disabling LPT Port Support for VM.
2019-05-04 09:22:50 (106024): Disabling Audio Support for VM.
2019-05-04 09:22:50 (106024): Disabling Clipboard Support for VM.
2019-05-04 09:22:50 (106024): Disabling Drag and Drop Support for VM.
2019-05-04 09:22:50 (106024): Adding storage controller(s) to VM.
2019-05-04 09:22:50 (106024): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-04 09:22:50 (106024): Adding VirtualBox Guest Additions to VM.
2019-05-04 09:22:50 (106024): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-04 09:22:50 (106024): Enabling shared directory for VM.
2019-05-04 09:22:50 (106024): Starting VM. (boinc_187f4e2edabb603f, slot#2)
2019-05-04 09:22:59 (106024): Guest Log: BIOS: VirtualBox 5.2.8

2019-05-04 09:22:59 (106024): Guest Log: CPUID EDX: 0x178bfbff

2019-05-04 09:22:59 (106024): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-05-04 09:22:59 (106024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-05-04 09:22:59 (106024): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-05-04 09:22:59 (106024): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-05-04 09:22:59 (106024): Guest Log: BIOS: Booting from CD-ROM...

2019-05-04 09:22:59 (106024): Successfully started VM. (PID = '115284')
2019-05-04 09:22:59 (106024): Reporting VM Process ID to BOINC.
2019-05-04 09:23:04 (106024): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-05-04 09:23:04 (106024): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-05-04 09:23:04 (106024): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-04 09:23:15 (106024): Preference change detected
2019-05-04 09:23:15 (106024): Setting CPU throttle for VM. (100%)
2019-05-04 09:23:17 (106024): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-04 09:23:32 (106024): Guest Log: net.ipv4.ip_forward = 1

2019-05-04 09:23:32 (106024): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-05-04 09:23:32 (106024): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-04 09:23:32 (106024): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-05-04 09:23:32 (106024): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-04 09:23:32 (106024): Guest Log: Segmentation fault

2019-05-04 09:23:32 (106024): Guest Log: automount ...

2019-05-04 09:23:32 (106024): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-05-04 09:23:32 (106024): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-05-04 09:23:32 (106024): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-05-04 09:23:32 (106024): Guest Log: automount over.

2019-05-04 09:23:32 (106024): Guest Log: Setting hostname to boot2docker Done.

2019-05-04 09:23:32 (106024): Guest Log: Sat May  4 09:23:26 UTC 2019 dhcp -------------------------------

2019-05-04 09:23:37 (106024): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-05-04 09:23:37 (106024): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1369)

2019-05-04 09:23:37 (106024): Guest Log: Sat May  4 09:23:32 UTC 2019 dhcp -------------------------------

2019-05-04 09:23:37 (106024): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000126 main     Log opened 2019-05-04T09:23:32.987163000Z

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000261 main     OS Product: Linux

2019-05-04 09:23:37 (106024): Guest Log: V00:00:00.000356 main     OS Release: 4.1.19-boot2docker

2019-05-04 09:23:37 (106024): Guest Log: ox00:00:00.000416 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-04 09:23:37 (106024): Guest Log: erv00:00:00.000477 main     Executable: /sbin/VBoxService

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000479 main     Process ID: 924

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000481 main     Package type: LINUX_64BITS_GENERIC

2019-05-04 09:23:37 (106024): Guest Log:  5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.002675 main     5.0.16 r105871 started. Verbose level = 0

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000126 main     Log opened 2019-05-04T09:23:32.987163000Z

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.006653 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.006732 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000261 main     OS Product: Linux

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000356 main     OS Release: 4.1.19-boot2docker

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000416 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000477 main     Executable: /sbin/VBoxService

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000479 main     Process ID: 924

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.000481 main     Package type: LINUX_64BITS_GENERIC

2019-05-04 09:23:37 (106024): Guest Log: 00:00:00.002675 main     5.0.16 r105871 started. Verbose level = 0

2019-05-04 09:23:37 (106024): Guest Log: Mounting BOINC shared/...

2019-05-04 09:23:37 (106024): Guest Log: -------------------

2019-05-04 09:23:37 (106024): Guest Log: Sat May  4 07:23:36 UTC 2019

2019-05-04 09:23:42 (106024): Guest Log: 00:00:05.010542 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-05-04 09:23:42 (106024): Guest Log: Sat May  4 07:23:43 UTC 2019

2019-05-04 09:23:42 (106024): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-05-04 09:23:42 (106024): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-05-04 09:23:42 (106024): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-05-04 09:23:42 (106024): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 09:23:42 (106024): Guest Log:     inet6 ::1/128 scope host 

2019-05-04 09:23:42 (106024): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 09:23:42 (106024): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-05-04 09:23:42 (106024): Guest Log:     link/ether 26:cf:78:4c:26:9d brd ff:ff:ff:ff:ff:ff

2019-05-04 09:23:42 (106024): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-05-04 09:23:42 (106024): Guest Log:     link/ether 08:00:27:5f:ec:39 brd ff:ff:ff:ff:ff:ff

2019-05-04 09:23:42 (106024): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-05-04 09:23:42 (106024): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 09:23:42 (106024): Guest Log:     inet6 fe80::a00:27ff:fe5f:ec39/64 scope link 

2019-05-04 09:23:42 (106024): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 09:23:42 (106024): Guest Log: -------------------

2019-05-04 09:23:42 (106024): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-05-04 09:23:42 (106024): Guest Log: Waiting for Docker daemon to start...

2019-05-04 09:23:42 (106024): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-04 09:23:42 (106024): Guest Log: Running boinc_app...

2019-05-04 09:23:42 (106024): Guest Log: Importing Docker image from BOINC...

2019-05-04 09:23:47 (106024): Guest Log: 00:00:10.011405 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-05-04 09:24:32 (106024): Guest Log: Prerun diagnostics...

2019-05-04 09:24:32 (106024): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-04 09:24:32 (106024): Guest Log: carlosred/bowtie    built               4beacb78841d        10 months ago       758.7 MB

2019-05-04 09:24:32 (106024): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-05-04 09:24:32 (106024): Guest Log: 753.8M	/var/lib/docker

2019-05-04 09:24:32 (106024): Guest Log:               total        used        free      shared  buff/cache   available

2019-05-04 09:24:32 (106024): Guest Log: Mem:           3461          56        2444         917         959        2445

2019-05-04 09:24:32 (106024): Guest Log: Swap:           812           0         812

2019-05-04 09:24:32 (106024): Guest Log: Prerun commands...

2019-05-04 09:24:32 (106024): Guest Log: Running... 

2019-05-04 09:24:32 (106024): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-04 09:24:32 (106024): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-04 09:25:18 (106024): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-04 09:25:18 (106024): Guest Log:   0 14.4M    0 16873    0     0  18210      0  0:13:51 --:--:--  0:13:51 18201

2019-05-04 09:25:18 (106024): Guest Log:   1 14.4M    1  175k    0     0  80999      0  0:03:06  0:00:02  0:03:04 81018

2019-05-04 09:25:18 (106024): Guest Log:   4 14.4M    4  599k    0     0   204k      0  0:01:12  0:00:02  0:01:10  204k

2019-05-04 09:25:18 (106024): Guest Log:   7 14.4M    7 1129k    0     0   287k      0  0:00:51  0:00:03  0:00:48  287k

2019-05-04 09:25:18 (106024): Guest Log:  11 14.4M   11 1658k    0     0   328k      0  0:00:44  0:00:05  0:00:39  328k

2019-05-04 09:25:18 (106024): Guest Log:  14 14.4M   14 2071k    0     0   349k      0  0:00:42  0:00:05  0:00:37  410k

2019-05-04 09:25:18 (106024): Guest Log:  17 14.4M   17 2524k    0     0   364k      0  0:00:40  0:00:06  0:00:34  498k

2019-05-04 09:25:18 (106024): Guest Log:  19 14.4M   19 2826k    0     0   356k      0  0:00:41  0:00:07  0:00:34  444k

2019-05-04 09:25:18 (106024): Guest Log:  21 14.4M   21 3129k    0     0   348k      0  0:00:42  0:00:08  0:00:34  395k

2019-05-04 09:25:18 (106024): Guest Log:  23 14.4M   23 3436k    0     0   346k      0  0:00:42  0:00:09  0:00:33  364k

2019-05-04 09:25:18 (106024): Guest Log:  25 14.4M   25 3755k    0     0   343k      0  0:00:43  0:00:10  0:00:33  336k

2019-05-04 09:25:18 (106024): Guest Log:  27 14.4M   27 4022k    0     0   337k      0  0:00:43  0:00:11  0:00:32  299k

2019-05-04 09:25:18 (106024): Guest Log:  29 14.4M   29 4361k    0     0   335k      0  0:00:44  0:00:13  0:00:31  301k

2019-05-04 09:25:18 (106024): Guest Log:  31 14.4M   31 4702k    0     0   337k      0  0:00:43  0:00:13  0:00:30  317k

2019-05-04 09:25:18 (106024): Guest Log:  33 14.4M   33 5001k    0     0   331k      0  0:00:44  0:00:15  0:00:29  303k

2019-05-04 09:25:18 (106024): Guest Log:  35 14.4M   35 5266k    0     0   330k      0  0:00:44  0:00:15  0:00:29  302k

2019-05-04 09:25:18 (106024): Guest Log:  38 14.4M   38 5662k    0     0   334k      0  0:00:44  0:00:16  0:00:28  328k

2019-05-04 09:25:18 (106024): Guest Log:  40 14.4M   40 5984k    0     0   333k      0  0:00:44  0:00:17  0:00:27  330k

2019-05-04 09:25:18 (106024): Guest Log:  43 14.4M   43 6391k    0     0   337k      0  0:00:43  0:00:18  0:00:25  338k

2019-05-04 09:25:18 (106024): Guest Log:  46 14.4M   46 6799k    0     0   341k      0  0:00:43  0:00:19  0:00:24  371k

2019-05-04 09:25:18 (106024): Guest Log:  48 14.4M   48 7190k    0     0   343k      0  0:00:43  0:00:20  0:00:23  382k

2019-05-04 09:25:18 (106024): Guest Log:  51 14.4M   51 7560k    0     0   344k      0  0:00:42  0:00:21  0:00:21  377k

2019-05-04 09:25:18 (106024): Guest Log:  53 14.4M   53 7974k    0     0   347k      0  0:00:42  0:00:22  0:00:20  396k

2019-05-04 09:25:18 (106024): Guest Log:  56 14.4M   56 8325k    0     0   347k      0  0:00:42  0:00:23  0:00:19  386k

2019-05-04 09:25:18 (106024): Guest Log:  58 14.4M   58 8704k    0     0   349k      0  0:00:42  0:00:24  0:00:18  380k

2019-05-04 09:25:18 (106024): Guest Log:  61 14.4M   61 9095k    0     0   350k      0  0:00:42  0:00:25  0:00:17  381k

2019-05-04 09:25:18 (106024): Guest Log:  64 14.4M   64 9540k    0     0   354k      0  0:00:41  0:00:26  0:00:15  397k

2019-05-04 09:25:18 (106024): Guest Log:  67 14.4M   67 9946k    0     0   356k      0  0:00:41  0:00:27  0:00:14  395k

2019-05-04 09:25:18 (106024): Guest Log:  68 14.4M   68  9.9M    0     0   347k      0  0:00:42  0:00:29  0:00:13  348k

2019-05-04 09:25:18 (106024): Guest Log:  68 14.4M   68  9.9M    0     0   336k      0  0:00:43  0:00:30  0:00:13  275k

2019-05-04 09:25:18 (106024): Guest Log:  70 14.4M   70 10.1M    0     0   336k      0  0:00:43  0:00:31  0:00:12  263k

2019-05-04 09:25:18 (106024): Guest Log:  72 14.4M   72 10.4M    0     0   335k      0  0:00:44  0:00:32  0:00:12  233k

2019-05-04 09:25:18 (106024): Guest Log:  74 14.4M   74 10.7M    0     0   334k      0  0:00:44  0:00:32  0:00:12  217k

2019-05-04 09:25:18 (106024): Guest Log:  76 14.4M   76 11.0M    0     0   334k      0  0:00:44  0:00:33  0:00:11  252k

2019-05-04 09:25:18 (106024): Guest Log:  78 14.4M   78 11.4M    0     0   334k      0  0:00:44  0:00:34  0:00:10  320k

2019-05-04 09:25:18 (106024): Guest Log:  81 14.4M   81 11.7M    0     0   334k      0  0:00:44  0:00:35  0:00:09  320k

2019-05-04 09:25:18 (106024): Guest Log:  83 14.4M   83 12.0M    0     0   334k      0  0:00:44  0:00:36  0:00:08  332k

2019-05-04 09:25:18 (106024): Guest Log:  86 14.4M   86 12.4M    0     0   336k      0  0:00:43  0:00:37  0:00:06  348k

2019-05-04 09:25:18 (106024): Guest Log:  89 14.4M   89 12.9M    0     0   339k      0  0:00:43  0:00:39  0:00:04  370k

2019-05-04 09:25:18 (106024): Guest Log:  93 14.4M   93 13.4M    0     0   344k      0  0:00:42  0:00:39  0:00:03  418k

2019-05-04 09:25:18 (106024): Guest Log:  95 14.4M   95 13.8M    0     0   345k      0  0:00:42  0:00:40  0:00:02  428k

2019-05-04 09:25:18 (106024): Guest Log:  98 14.4M   98 14.2M    0     0   348k      0  0:00:42  0:00:41  0:00:01  446k

2019-05-04 09:25:18 (106024): Guest Log: 100 14.4M  100 14.4M    0     0   349k      0  0:00:42  0:00:42 --:--:--  459k

2019-05-04 09:25:18 (106024): Guest Log: Archive:  s_cerevisiae.ebwt.zip

2019-05-04 09:25:18 (106024): Guest Log:   inflating: s_cerevisiae.1.ebwt     

2019-05-04 09:25:18 (106024): Guest Log:   inflating: s_cerevisiae.2.ebwt     

2019-05-04 09:25:18 (106024): Guest Log:   inflating: s_cerevisiae.3.ebwt     

2019-05-04 09:25:18 (106024): Guest Log:   inflating: s_cerevisiae.4.ebwt     

2019-05-04 09:25:18 (106024): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  

2019-05-04 09:25:18 (106024): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  

2019-05-04 09:25:18 (106024): Guest Log:   inflating: make_s_cerevisiae.sh    

2019-05-04 09:25:18 (106024): Guest Log: # reads processed: 1

2019-05-04 09:25:18 (106024): Guest Log: # reads with at least one reported alignment: 1 (100.00%)

2019-05-04 09:25:18 (106024): Guest Log: # reads that failed to align: 0 (0.00%)

2019-05-04 09:25:18 (106024): Guest Log: Reported 1 alignments

2019-05-04 09:25:18 (106024): Guest Log: Postrun commands...

2019-05-04 09:25:18 (106024): Guest Log: boinc_app exited (0)

2019-05-04 09:25:18 (106024): Guest Log: Saving results...

2019-05-04 09:25:18 (106024): Guest Log: make_s_cerevisiae.sh

2019-05-04 09:25:18 (106024): Guest Log: res_bowtie.txt

2019-05-04 09:25:18 (106024): VM Completion File Detected.
2019-05-04 09:25:18 (106024): Powering off VM.
2019-05-04 09:25:19 (106024): Successfully stopped VM.
2019-05-04 09:25:24 (106024): Deregistering VM. (boinc_187f4e2edabb603f, slot#2)
2019-05-04 09:25:24 (106024): Removing virtual disk drive(s) from VM.
2019-05-04 09:25:24 (106024): Removing network bandwidth throttle group from VM.
2019-05-04 09:25:24 (106024): Removing storage controller(s) from VM.
2019-05-04 09:25:24 (106024): Removing VM from VirtualBox.
09:25:29 (106024): called boinc_finish(0)

</stderr_txt>
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