Task 214143

Name boinc2docker_24426_1556846793.222371_0
Workunit 97992
Created 3 May 2019, 1:26:34 UTC
Sent 3 May 2019, 22:39:32 UTC
Report deadline 10 May 2019, 22:39:32 UTC
Received 4 May 2019, 7:22:17 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 374
Run time 2 min 27 sec
CPU time 1 min 34 sec
Validate state Valid
Credit 5.10
Device peak FLOPS 12.57 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 91.12 MB
Peak swap size 106.18 MB
Peak disk usage 340.76 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-05-04 09:19:35 (114936): vboxwrapper (7.9.26200): starting
2019-05-04 09:19:36 (114936): Status Report: Detected vboxsvc.exe. (PID = '96712')
2019-05-04 09:19:36 (114936): Feature: Checkpoint interval offset (273 seconds)
2019-05-04 09:19:36 (114936): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-05-04 09:19:36 (114936): Detected: Sandbox Configuration Enabled
2019-05-04 09:19:36 (114936): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-05-04 09:19:36 (114936): Create VM. (boinc_0d78849f0dcc037f, slot#3)
2019-05-04 09:19:36 (114936): Updating drive controller type and model for desired configuration.
2019-05-04 09:19:36 (114936): Setting Memory Size for VM. (3534MB)
2019-05-04 09:19:36 (114936): Setting CPU Count for VM. (4)
2019-05-04 09:19:36 (114936): Setting Chipset Options for VM.
2019-05-04 09:19:36 (114936): Setting Boot Options for VM.
2019-05-04 09:19:36 (114936): Enabling VM Network Access.
2019-05-04 09:19:36 (114936): Setting Network Configuration for NAT.
2019-05-04 09:19:36 (114936): Disabling USB Support for VM.
2019-05-04 09:19:36 (114936): Disabling COM Port Support for VM.
2019-05-04 09:19:36 (114936): Disabling LPT Port Support for VM.
2019-05-04 09:19:36 (114936): Disabling Audio Support for VM.
2019-05-04 09:19:36 (114936): Disabling Clipboard Support for VM.
2019-05-04 09:19:36 (114936): Disabling Drag and Drop Support for VM.
2019-05-04 09:19:36 (114936): Adding storage controller(s) to VM.
2019-05-04 09:19:36 (114936): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-05-04 09:19:36 (114936): Adding VirtualBox Guest Additions to VM.
2019-05-04 09:19:36 (114936): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-05-04 09:19:36 (114936): Enabling shared directory for VM.
2019-05-04 09:19:36 (114936): Starting VM. (boinc_0d78849f0dcc037f, slot#3)
2019-05-04 09:19:48 (114936): Guest Log: BIOS: VirtualBox 5.2.8

2019-05-04 09:19:48 (114936): Guest Log: CPUID EDX: 0x178bfbff

2019-05-04 09:19:48 (114936): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-05-04 09:19:48 (114936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-05-04 09:19:48 (114936): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-05-04 09:19:48 (114936): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-05-04 09:19:48 (114936): Guest Log: BIOS: Booting from CD-ROM...

2019-05-04 09:19:48 (114936): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-05-04 09:19:48 (114936): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-05-04 09:19:48 (114936): Successfully started VM. (PID = '108440')
2019-05-04 09:19:48 (114936): Reporting VM Process ID to BOINC.
2019-05-04 09:19:53 (114936): VM state change detected. (old = 'poweroff', new = 'running')
2019-05-04 09:20:03 (114936): Preference change detected
2019-05-04 09:20:03 (114936): Setting CPU throttle for VM. (100%)
2019-05-04 09:20:03 (114936): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-05-04 09:20:13 (114936): Guest Log: net.ipv4.ip_forward = 1

2019-05-04 09:20:13 (114936): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-05-04 09:20:13 (114936): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-04 09:20:13 (114936): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-05-04 09:20:13 (114936): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-05-04 09:20:13 (114936): Guest Log: Segmentation fault

2019-05-04 09:20:13 (114936): Guest Log: automount ...

2019-05-04 09:20:13 (114936): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-05-04 09:20:13 (114936): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-05-04 09:20:18 (114936): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-05-04 09:20:18 (114936): Guest Log: automount over.

2019-05-04 09:20:18 (114936): Guest Log: Setting hostname to boot2docker Done.

2019-05-04 09:20:18 (114936): Guest Log: Sat May  4 09:20:16 UTC 2019 dhcp -------------------------------

2019-05-04 09:20:23 (114936): Guest Log: Sat May  4 09:20:20 UTC 2019 dhcp -------------------------------

2019-05-04 09:20:23 (114936): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000145 main     Log opened 2019-05-04T09:20:20.976932000Z

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000273 main     OS Product: Linux

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000319 main     OS Release: 4.1.19-boot2docker

2019-05-04 09:20:23 (114936): Guest Log: VB00:00:00.000388 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-04 09:20:23 (114936): Guest Log: ice 5.0.16 r105871 (verbosity: 0) linux.amd600:00:00.002292 main     5.0.16 r105871 started. Verbose level = 0

2019-05-04 09:20:23 (114936): Guest Log:  (Mar  4 2016 17:38:55) release log

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000145 main     Log opened 2019-05-04T09:20:20.976932000Z

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.009539 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.009622 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000273 main     OS Product: Linux

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000319 main     OS Release: 4.1.19-boot2docker

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000388 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000452 main     Executable: /sbin/VBoxService

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000454 main     Process ID: 901

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.000455 main     Package type: LINUX_64BITS_GENERIC

2019-05-04 09:20:23 (114936): Guest Log: 00:00:00.002292 main     5.0.16 r105871 started. Verbose level = 0

2019-05-04 09:20:23 (114936): Guest Log: Mounting BOINC shared/...

2019-05-04 09:20:23 (114936): Guest Log: -------------------

2019-05-04 09:20:23 (114936): Guest Log: Sat May  4 07:20:23 UTC 2019

2019-05-04 09:20:29 (114936): Guest Log: 00:00:05.012843 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-05-04 09:20:29 (114936): Guest Log: Sat May  4 07:20:30 UTC 2019

2019-05-04 09:20:29 (114936): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-05-04 09:20:29 (114936): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-05-04 09:20:29 (114936): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-05-04 09:20:29 (114936): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 09:20:29 (114936): Guest Log:     inet6 ::1/128 scope host 

2019-05-04 09:20:29 (114936): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 09:20:29 (114936): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-05-04 09:20:29 (114936): Guest Log:     link/ether 86:5a:3a:a7:c7:44 brd ff:ff:ff:ff:ff:ff

2019-05-04 09:20:29 (114936): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-05-04 09:20:29 (114936): Guest Log:     link/ether 08:00:27:90:bc:4b brd ff:ff:ff:ff:ff:ff

2019-05-04 09:20:29 (114936): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-05-04 09:20:29 (114936): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 09:20:29 (114936): Guest Log:     inet6 fe80::a00:27ff:fe90:bc4b/64 scope link 

2019-05-04 09:20:29 (114936): Guest Log:        valid_lft forever preferred_lft forever

2019-05-04 09:20:29 (114936): Guest Log: -------------------

2019-05-04 09:20:29 (114936): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-05-04 09:20:29 (114936): Guest Log: Waiting for Docker daemon to start...

2019-05-04 09:20:34 (114936): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-04 09:20:34 (114936): Guest Log: Running boinc_app...

2019-05-04 09:20:34 (114936): Guest Log: Importing Docker image from BOINC...

2019-05-04 09:20:34 (114936): Guest Log: 00:00:10.014211 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-05-04 09:21:19 (114936): Guest Log: Prerun diagnostics...

2019-05-04 09:21:19 (114936): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-05-04 09:21:19 (114936): Guest Log: carlosred/bowtie    built               4beacb78841d        10 months ago       758.7 MB

2019-05-04 09:21:19 (114936): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-05-04 09:21:19 (114936): Guest Log: 753.8M	/var/lib/docker

2019-05-04 09:21:19 (114936): Guest Log:               total        used        free      shared  buff/cache   available

2019-05-04 09:21:19 (114936): Guest Log: Mem:           3461          54        2447         917         958        2447

2019-05-04 09:21:19 (114936): Guest Log: Swap:           814           0         814

2019-05-04 09:21:19 (114936): Guest Log: Prerun commands...

2019-05-04 09:21:19 (114936): Guest Log: Running... 

2019-05-04 09:21:19 (114936): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-05-04 09:21:19 (114936): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-05-04 09:21:49 (114936): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-05-04 09:21:49 (114936): Guest Log:   0 14.4M    0 16873    0     0  18945      0  0:13:18 --:--:--  0:13:18 18937

2019-05-04 09:21:49 (114936): Guest Log:   2 14.4M    2  323k    0     0   180k      0  0:01:21  0:00:01  0:01:20  180k

2019-05-04 09:21:49 (114936): Guest Log:   6 14.4M    6  992k    0     0   352k      0  0:00:41  0:00:02  0:00:39  352k

2019-05-04 09:21:49 (114936): Guest Log:   9 14.4M    9 1394k    0     0   371k      0  0:00:39  0:00:03  0:00:36  371k

2019-05-04 09:21:49 (114936): Guest Log:  12 14.4M   12 1812k    0     0   380k      0  0:00:38  0:00:04  0:00:34  380k

2019-05-04 09:21:49 (114936): Guest Log:  15 14.4M   15 2248k    0     0   391k      0  0:00:37  0:00:05  0:00:32  459k

2019-05-04 09:21:49 (114936): Guest Log:  18 14.4M   18 2694k    0     0   399k      0  0:00:36  0:00:06  0:00:30  479k

2019-05-04 09:21:49 (114936): Guest Log:  21 14.4M   21 3176k    0     0   407k      0  0:00:36  0:00:07  0:00:29  438k

2019-05-04 09:21:49 (114936): Guest Log:  24 14.4M   24 3655k    0     0   417k      0  0:00:35  0:00:08  0:00:27  450k

2019-05-04 09:21:49 (114936): Guest Log:  28 14.4M   28 4194k    0     0   430k      0  0:00:34  0:00:09  0:00:25  479k

2019-05-04 09:21:49 (114936): Guest Log:  32 14.4M   32 4783k    0     0   436k      0  0:00:33  0:00:10  0:00:23  487k

2019-05-04 09:21:49 (114936): Guest Log:  36 14.4M   36 5468k    0     0   465k      0  0:00:31  0:00:11  0:00:20  554k

2019-05-04 09:21:49 (114936): Guest Log:  41 14.4M   41 6149k    0     0   482k      0  0:00:30  0:00:12  0:00:18  600k

2019-05-04 09:21:49 (114936): Guest Log:  46 14.4M   46 6887k    0     0   500k      0  0:00:29  0:00:13  0:00:16  648k

2019-05-04 09:21:49 (114936): Guest Log:  51 14.4M   51 7562k    0     0   512k      0  0:00:28  0:00:14  0:00:14  673k

2019-05-04 09:21:49 (114936): Guest Log:  55 14.4M   55 8225k    0     0   522k      0  0:00:28  0:00:15  0:00:13  718k

2019-05-04 09:21:49 (114936): Guest Log:  59 14.4M   59 8739k    0     0   522k      0  0:00:28  0:00:16  0:00:12  654k

2019-05-04 09:21:49 (114936): Guest Log:  62 14.4M   62 9168k    0     0   512k      0  0:00:28  0:00:17  0:00:11  586k

2019-05-04 09:21:49 (114936): Guest Log:  66 14.4M   66 9806k    0     0   523k      0  0:00:28  0:00:18  0:00:10  584k

2019-05-04 09:21:49 (114936): Guest Log:  70 14.4M   70 10.1M    0     0   525k      0  0:00:28  0:00:19  0:00:09  561k

2019-05-04 09:21:49 (114936): Guest Log:  74 14.4M   74 10.6M    0     0   527k      0  0:00:28  0:00:20  0:00:08  542k

2019-05-04 09:21:49 (114936): Guest Log:  77 14.4M   77 11.2M    0     0   520k      0  0:00:28  0:00:22  0:00:06  515k

2019-05-04 09:21:49 (114936): Guest Log:  80 14.4M   80 11.6M    0     0   524k      0  0:00:28  0:00:22  0:00:06  568k

2019-05-04 09:21:49 (114936): Guest Log:  83 14.4M   83 12.0M    0     0   519k      0  0:00:28  0:00:23  0:00:05  503k

2019-05-04 09:21:49 (114936): Guest Log:  86 14.4M   86 12.4M    0     0   514k      0  0:00:28  0:00:24  0:00:04  471k

2019-05-04 09:21:49 (114936): Guest Log:  89 14.4M   89 12.8M    0     0   511k      0  0:00:28  0:00:25  0:00:03  444k

2019-05-04 09:21:49 (114936): Guest Log:  91 14.4M   91 13.2M    0     0   505k      0  0:00:29  0:00:26  0:00:03  436k

2019-05-04 09:21:49 (114936): Guest Log:  94 14.4M   94 13.5M    0     0   500k      0  0:00:29  0:00:27  0:00:02  394k

2019-05-04 09:21:49 (114936): Guest Log:  96 14.4M   96 13.9M    0     0   498k      0  0:00:29  0:00:28  0:00:01  401k

2019-05-04 09:21:49 (114936): Guest Log:  99 14.4M   99 14.3M    0     0   493k      0  0:00:29  0:00:29 --:--:--  389k

2019-05-04 09:21:49 (114936): Guest Log: 100 14.4M  100 14.4M    0     0   492k      0  0:00:29  0:00:29 --:--:--  380k

2019-05-04 09:21:49 (114936): Guest Log: Archive:  s_cerevisiae.ebwt.zip

2019-05-04 09:21:49 (114936): Guest Log:   inflating: s_cerevisiae.1.ebwt     

2019-05-04 09:21:49 (114936): Guest Log:   inflating: s_cerevisiae.2.ebwt     

2019-05-04 09:21:49 (114936): Guest Log:   inflating: s_cerevisiae.3.ebwt     

2019-05-04 09:21:49 (114936): Guest Log:   inflating: s_cerevisiae.4.ebwt     

2019-05-04 09:21:49 (114936): Guest Log:   inflating: s_cerevisiae.rev.1.ebwt  

2019-05-04 09:21:49 (114936): Guest Log:   inflating: s_cerevisiae.rev.2.ebwt  

2019-05-04 09:21:49 (114936): Guest Log:   inflating: make_s_cerevisiae.sh    

2019-05-04 09:21:49 (114936): Guest Log: # reads processed: 1

2019-05-04 09:21:49 (114936): Guest Log: # reads with at least one reported alignment: 1 (100.00%)

2019-05-04 09:21:49 (114936): Guest Log: # reads that failed to align: 0 (0.00%)

2019-05-04 09:21:49 (114936): Guest Log: Reported 1 alignments

2019-05-04 09:21:49 (114936): Guest Log: Postrun commands...

2019-05-04 09:21:49 (114936): Guest Log: boinc_app exited (0)

2019-05-04 09:21:49 (114936): Guest Log: Saving results...

2019-05-04 09:21:49 (114936): Guest Log: make_s_cerevisiae.sh

2019-05-04 09:21:49 (114936): Guest Log: res_bowtie.txt

2019-05-04 09:21:49 (114936): VM Completion File Detected.
2019-05-04 09:21:49 (114936): Powering off VM.
2019-05-04 09:21:50 (114936): Successfully stopped VM.
2019-05-04 09:21:55 (114936): Deregistering VM. (boinc_0d78849f0dcc037f, slot#3)
2019-05-04 09:21:55 (114936): Removing virtual disk drive(s) from VM.
2019-05-04 09:21:55 (114936): Removing network bandwidth throttle group from VM.
2019-05-04 09:21:55 (114936): Removing storage controller(s) from VM.
2019-05-04 09:21:55 (114936): Removing VM from VirtualBox.
09:22:00 (114936): called boinc_finish(0)

</stderr_txt>
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