Task 127006

Name boinc2docker_13648_1555625351.081981_2
Workunit 53892
Created 25 Apr 2019, 22:13:58 UTC
Sent 25 Apr 2019, 22:15:36 UTC
Report deadline 2 May 2019, 22:15:36 UTC
Received 25 Apr 2019, 23:13:19 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 8
Run time 1 min 50 sec
CPU time 56 sec
Validate state Valid
Credit 5.16
Device peak FLOPS 16.55 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 103.74 MB
Peak swap size 119.89 MB
Peak disk usage 677.34 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-04-25 19:11:21 (18456): vboxwrapper (7.9.26200): starting
2019-04-25 19:11:21 (18456): Feature: Checkpoint interval offset (504 seconds)
2019-04-25 19:11:21 (18456): Detected: VirtualBox COM Interface (Version: 5.2.8)
2019-04-25 19:11:21 (18456): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-04-25 19:11:21 (18456): Create VM. (boinc_faef8ed3d5f69271, slot#1)
2019-04-25 19:11:21 (18456): Updating drive controller type and model for desired configuration.
2019-04-25 19:11:21 (18456): Setting Memory Size for VM. (6392MB)
2019-04-25 19:11:21 (18456): Setting CPU Count for VM. (2)
2019-04-25 19:11:21 (18456): Setting Chipset Options for VM.
2019-04-25 19:11:21 (18456): Setting Boot Options for VM.
2019-04-25 19:11:21 (18456): Enabling VM Network Access.
2019-04-25 19:11:21 (18456): Setting Network Configuration for NAT.
2019-04-25 19:11:21 (18456): Disabling USB Support for VM.
2019-04-25 19:11:21 (18456): Disabling COM Port Support for VM.
2019-04-25 19:11:21 (18456): Disabling LPT Port Support for VM.
2019-04-25 19:11:21 (18456): Disabling Audio Support for VM.
2019-04-25 19:11:21 (18456): Disabling Clipboard Support for VM.
2019-04-25 19:11:21 (18456): Disabling Drag and Drop Support for VM.
2019-04-25 19:11:21 (18456): Adding storage controller(s) to VM.
2019-04-25 19:11:21 (18456): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-04-25 19:11:22 (18456): Adding VirtualBox Guest Additions to VM.
2019-04-25 19:11:22 (18456): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-04-25 19:11:22 (18456): Enabling shared directory for VM.
2019-04-25 19:11:22 (18456): Starting VM. (boinc_faef8ed3d5f69271, slot#1)
2019-04-25 19:11:31 (18456): Guest Log: BIOS: VirtualBox 5.2.8

2019-04-25 19:11:31 (18456): Guest Log: CPUID EDX: 0x178bfbff

2019-04-25 19:11:31 (18456): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-04-25 19:11:31 (18456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-04-25 19:11:31 (18456): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-04-25 19:11:31 (18456): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-04-25 19:11:31 (18456): Guest Log: BIOS: Booting from CD-ROM...

2019-04-25 19:11:31 (18456): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-04-25 19:11:31 (18456): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-04-25 19:11:31 (18456): Successfully started VM. (PID = '13884')
2019-04-25 19:11:31 (18456): Reporting VM Process ID to BOINC.
2019-04-25 19:11:36 (18456): VM state change detected. (old = 'poweroff', new = 'running')
2019-04-25 19:11:46 (18456): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-04-25 19:11:46 (18456): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-04-25 19:11:46 (18456): Guest Log: net.ipv4.ip_forward = 1

2019-04-25 19:11:46 (18456): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-04-25 19:11:46 (18456): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-04-25 19:11:46 (18456): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-04-25 19:11:46 (18456): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-04-25 19:11:46 (18456): Guest Log: Segmentation fault

2019-04-25 19:11:46 (18456): Guest Log: automount ...

2019-04-25 19:11:46 (18456): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-04-25 19:11:46 (18456): Guest Log: automount over.

2019-04-25 19:11:46 (18456): Guest Log: Setting hostname to boot2docker Done.

2019-04-25 19:11:46 (18456): Guest Log: Thu Apr 25 19:11:42 UTC 2019 dhcp -------------------------------

2019-04-25 19:11:46 (18456): Preference change detected
2019-04-25 19:11:46 (18456): Setting CPU throttle for VM. (100%)
2019-04-25 19:11:46 (18456): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-04-25 19:11:51 (18456): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-04-25 19:11:51 (18456): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1350)

2019-04-25 19:11:51 (18456): Guest Log: Thu Apr 25 19:11:48 UTC 2019 dhcp -------------------------------

2019-04-25 19:11:51 (18456): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.000103 main     Log opened 2019-04-25T19:11:48.096577000Z

2019-04-25 19:11:51 (18456): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007045 main     OS Product: Linux

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007130 main     OS Release: 4.1.19-boot2docker

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007198 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007263 main     Executable: /sbin/VBoxService

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007264 main     Process ID: 963

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007265 main     Package type: LINUX_64BITS_GENERIC

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.000103 main     Log opened00:00:00.008709 main     5.0.16 r105871 started. Verbose level = 0

2019-04-25 19:11:51 (18456): Guest Log:  2019-04-25T19:11:48.096577000Z00:00:00.011873 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.011996 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007045 main     OS Product: Linux

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007130 main     OS Release: 4.1.19-boot2docker

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007198 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007263 main     Executable: /sbin/VBoxService

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007264 main     Process ID: 963

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.007265 main     Package type: LINUX_64BITS_GENERIC

2019-04-25 19:11:51 (18456): Guest Log: 00:00:00.008709 main     5.0.16 r105871 started. Verbose level = 0

2019-04-25 19:11:51 (18456): Guest Log: Mounting BOINC shared/...

2019-04-25 19:11:51 (18456): Guest Log: -------------------

2019-04-25 19:11:51 (18456): Guest Log: Thu Apr 25 23:11:50 UTC 2019

2019-04-25 19:11:56 (18456): Guest Log: 00:00:05.015790 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-04-25 19:11:56 (18456): Guest Log: Thu Apr 25 23:11:53 UTC 2019

2019-04-25 19:11:56 (18456): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-04-25 19:11:56 (18456): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-04-25 19:11:56 (18456): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-04-25 19:11:56 (18456): Guest Log:        valid_lft forever preferred_lft forever

2019-04-25 19:11:56 (18456): Guest Log:     inet6 ::1/128 scope host 

2019-04-25 19:11:56 (18456): Guest Log:        valid_lft forever preferred_lft forever

2019-04-25 19:11:56 (18456): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-04-25 19:11:56 (18456): Guest Log:     link/ether 42:79:4a:f4:6e:b2 brd ff:ff:ff:ff:ff:ff

2019-04-25 19:11:56 (18456): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-04-25 19:11:56 (18456): Guest Log:     link/ether 08:00:27:4c:a3:07 brd ff:ff:ff:ff:ff:ff

2019-04-25 19:11:56 (18456): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-04-25 19:11:56 (18456): Guest Log:        valid_lft forever preferred_lft forever

2019-04-25 19:11:56 (18456): Guest Log:     inet6 fe80::a00:27ff:fe4c:a307/64 scope link tentative 

2019-04-25 19:11:56 (18456): Guest Log:        valid_lft forever preferred_lft forever

2019-04-25 19:11:56 (18456): Guest Log: -------------------

2019-04-25 19:11:56 (18456): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-04-25 19:11:56 (18456): Guest Log: Waiting for Docker daemon to start...

2019-04-25 19:11:56 (18456): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-04-25 19:11:56 (18456): Guest Log: Running boinc_app...

2019-04-25 19:11:56 (18456): Guest Log: Importing Docker image from BOINC...

2019-04-25 19:12:01 (18456): Guest Log: 00:00:10.016422 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-04-25 19:12:51 (18456): Guest Log: Prerun diagnostics...

2019-04-25 19:12:51 (18456): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE

2019-04-25 19:12:51 (18456): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        9 months ago        1.473 GB

2019-04-25 19:12:51 (18456): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-04-25 19:12:51 (18456): Guest Log: 1.4G	/var/lib/docker

2019-04-25 19:12:51 (18456): Guest Log:               total        used        free      shared  buff/cache   available

2019-04-25 19:12:51 (18456): Guest Log: Mem:           6204          56        4456        1634        1692        4458

2019-04-25 19:12:51 (18456): Guest Log: Swap:          1499           0        1499

2019-04-25 19:12:51 (18456): Guest Log: Prerun commands...

2019-04-25 19:12:51 (18456): Guest Log: Running... 

2019-04-25 19:12:51 (18456): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-04-25 19:12:51 (18456): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-04-25 19:12:56 (18456): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-04-25 19:12:56 (18456): Guest Log:  43  762k   43  334k    0     0   475k      0  0:00:01 --:--:--  0:00:01  475k

2019-04-25 19:12:56 (18456): Guest Log: 100  762k  100  762k    0     0   713k      0  0:00:01  0:00:01 --:--:--  714k

2019-04-25 19:12:56 (18456): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-04-25 19:12:56 (18456): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-04-25 19:12:56 (18456): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-04-25 19:12:56 (18456): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0

2019-04-25 19:12:56 (18456): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0

2019-04-25 19:12:56 (18456): Guest Log: 100  1272  100  1272    0     0    771      0  0:00:01  0:00:01 --:--:--   770

2019-04-25 19:12:56 (18456): Guest Log: Postrun commands...

2019-04-25 19:12:56 (18456): Guest Log: boinc_app exited (0)

2019-04-25 19:12:56 (18456): Guest Log: Saving results...

2019-04-25 19:12:56 (18456): Guest Log: lammps_test.txt

2019-04-25 19:12:56 (18456): VM Completion File Detected.
2019-04-25 19:12:56 (18456): Powering off VM.
2019-04-25 19:12:58 (18456): Successfully stopped VM.
2019-04-25 19:13:03 (18456): Deregistering VM. (boinc_faef8ed3d5f69271, slot#1)
2019-04-25 19:13:03 (18456): Removing virtual disk drive(s) from VM.
2019-04-25 19:13:03 (18456): Removing network bandwidth throttle group from VM.
2019-04-25 19:13:03 (18456): Removing storage controller(s) from VM.
2019-04-25 19:13:03 (18456): Removing VM from VirtualBox.
19:13:08 (18456): called boinc_finish(0)

</stderr_txt>
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