Task 126998

Name boinc2docker_13368_1555625346.681536_2
Workunit 53888
Created 25 Apr 2019, 22:13:57 UTC
Sent 25 Apr 2019, 22:14:25 UTC
Report deadline 2 May 2019, 22:14:25 UTC
Received 25 Apr 2019, 22:31:31 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 282
Run time 2 min 30 sec
CPU time 2 min 9 sec
Validate state Valid
Credit 5.24
Device peak FLOPS 13.41 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 143.27 MB
Peak swap size 6,517.27 MB
Peak disk usage 677.08 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-04-25 17:28:48 (24186): vboxwrapper (7.7.26197): starting
2019-04-25 17:28:48 (24186): Feature: Checkpoint interval offset (152 seconds)
2019-04-25 17:28:48 (24186): Detected: VirtualBox VboxManage Interface (Version: 6.0.4)
2019-04-25 17:28:49 (24186): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-04-25 17:28:49 (24186): Create VM. (boinc_b2e9d40acef781d9, slot#16)
2019-04-25 17:28:49 (24186): Updating drive controller type and model for desired configuration.
2019-04-25 17:28:49 (24186): Setting Memory Size for VM. (6392MB)
2019-04-25 17:28:49 (24186): Setting CPU Count for VM. (4)
2019-04-25 17:28:49 (24186): Setting Chipset Options for VM.
2019-04-25 17:28:49 (24186): Setting Boot Options for VM.
2019-04-25 17:28:50 (24186): Setting Network Configuration for NAT.
2019-04-25 17:28:50 (24186): Enabling VM Network Access.
2019-04-25 17:28:50 (24186): Disabling USB Support for VM.
2019-04-25 17:28:50 (24186): Disabling COM Port Support for VM.
2019-04-25 17:28:50 (24186): Disabling LPT Port Support for VM.
2019-04-25 17:28:50 (24186): Disabling Audio Support for VM.
2019-04-25 17:28:50 (24186): Disabling Clipboard Support for VM.
2019-04-25 17:28:50 (24186): Disabling Drag and Drop Support for VM.
2019-04-25 17:28:50 (24186): Adding storage controller(s) to VM.
2019-04-25 17:28:51 (24186): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-04-25 17:28:51 (24186): Adding VirtualBox Guest Additions to VM.
2019-04-25 17:28:51 (24186): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-04-25 17:28:51 (24186): Enabling shared directory for VM.
2019-04-25 17:28:51 (24186): Starting VM. (boinc_b2e9d40acef781d9, slot#16)
2019-04-25 17:28:53 (24186): Successfully started VM. (PID = '24995')
2019-04-25 17:28:53 (24186): Reporting VM Process ID to BOINC.
2019-04-25 17:28:53 (24186): Guest Log: BIOS: VirtualBox 6.0.4
2019-04-25 17:28:53 (24186): Guest Log: CPUID EDX: 0x178bfbff
2019-04-25 17:28:53 (24186): VM state change detected. (old = 'poweroff', new = 'running')
2019-04-25 17:28:53 (24186): Preference change detected
2019-04-25 17:28:53 (24186): Setting CPU throttle for VM. (100%)
2019-04-25 17:28:53 (24186): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 600 seconds))
2019-04-25 17:28:55 (24186): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-04-25 17:28:55 (24186): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-04-25 17:28:55 (24186): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-04-25 17:28:55 (24186): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-04-25 17:28:55 (24186): Guest Log: BIOS: Booting from CD-ROM...
2019-04-25 17:29:09 (24186): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-04-25 17:29:09 (24186): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-04-25 17:29:20 (24186): Guest Log: net.ipv4.ip_forward = 1
2019-04-25 17:29:20 (24186): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-04-25 17:29:20 (24186): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-04-25 17:29:20 (24186): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-04-25 17:29:20 (24186): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-04-25 17:29:20 (24186): Guest Log: Segmentation fault
2019-04-25 17:29:21 (24186): Guest Log: automount ...
2019-04-25 17:29:21 (24186): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-04-25 17:29:21 (24186): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-04-25 17:29:33 (24186): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-04-25 17:29:33 (24186): Guest Log: automount over.
2019-04-25 17:29:33 (24186): Guest Log: Setting hostname to boot2docker Done.
2019-04-25 17:29:33 (24186): Guest Log: Thu Apr 25 17:29:31 UTC 2019 dhcp -------------------------------
2019-04-25 17:29:34 (24186): Guest Log: Thu Apr 25 17:29:32 UTC 2019 dhcp -------------------------------
2019-04-25 17:29:35 (24186): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000104 main     Log opened 2019-04-25T17:29:32.243798000Z
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000211 main     OS Product: Linux
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000269 main     OS Release: 4.1.19-boot2docker
2019-04-25 17:29:35 (24186): Guest Log: V00:00:00.000345 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-04-25 17:29:35 (24186): Guest Log: Box00:00:00.000396 main     Executable: /sbin/VBoxService
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000398 main     Process ID: 866S
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000400 main     Package type: LINUX_64BITS_GENERIC
2019-04-25 17:29:35 (24186): Guest Log: ervice 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.002873 main     5.0.16 r105871 started. Verbose level = 0
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000104 main     Log opened 2019-04-25T17:29:32.243798000Z
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000211 main     OS Product: Linux
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.007154 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-04-25 17:29:35 (24186): Guest Log: 00:000:00:00.007222 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-04-25 17:29:35 (24186): Guest Log: :00.000269 main     OS Release: 4.1.19-boot2docker
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000345 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000396 main     Executable: /sbin/VBoxService
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000398 main     Process ID: 866
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.000400 main     Package type: LINUX_64BITS_GENERIC
2019-04-25 17:29:35 (24186): Guest Log: 00:00:00.002873 main     5.0.16 r105871 started. Verbose level = 0
2019-04-25 17:29:35 (24186): Guest Log: Mounting BOINC shared/...
2019-04-25 17:29:35 (24186): Guest Log: -------------------
2019-04-25 17:29:35 (24186): Guest Log: Thu Apr 25 22:29:34 UTC 2019
2019-04-25 17:29:40 (24186): Guest Log: 00:00:05.011482 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-04-25 17:29:40 (24186): Guest Log: Thu Apr 25 22:29:39 UTC 2019
2019-04-25 17:29:40 (24186): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-04-25 17:29:40 (24186): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-04-25 17:29:40 (24186): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-04-25 17:29:40 (24186): Guest Log:        valid_lft forever preferred_lft forever
2019-04-25 17:29:40 (24186): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-04-25 17:29:40 (24186): Guest Log:     link/ether 3a:86:58:86:ea:71 brd ff:ff:ff:ff:ff:ff
2019-04-25 17:29:40 (24186): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-04-25 17:29:40 (24186): Guest Log:     link/ether 08:00:27:db:bb:9a brd ff:ff:ff:ff:ff:ff
2019-04-25 17:29:40 (24186): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-04-25 17:29:40 (24186): Guest Log:        valid_lft forever preferred_lft forever
2019-04-25 17:29:40 (24186): Guest Log: -------------------
2019-04-25 17:29:40 (24186): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-04-25 17:29:40 (24186): Guest Log: Waiting for Docker daemon to start...
2019-04-25 17:29:40 (24186): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-04-25 17:29:41 (24186): Guest Log: Running boinc_app...
2019-04-25 17:29:41 (24186): Guest Log: Importing Docker image from BOINC...
2019-04-25 17:29:44 (24186): Guest Log: 00:00:10.012317 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-04-25 17:30:59 (24186): Guest Log: Prerun diagnostics...
2019-04-25 17:30:59 (24186): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE
2019-04-25 17:30:59 (24186): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        9 months ago        1.473 GB
2019-04-25 17:30:59 (24186): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-04-25 17:30:59 (24186): Guest Log: 1.4G	/var/lib/docker
2019-04-25 17:30:59 (24186): Guest Log:               total        used        free      shared  buff/cache   available
2019-04-25 17:30:59 (24186): Guest Log: Mem:           6204          62        4450        1634        1692        4452
2019-04-25 17:30:59 (24186): Guest Log: Swap:          1500           0        1500
2019-04-25 17:30:59 (24186): Guest Log: Prerun commands...
2019-04-25 17:30:59 (24186): Guest Log: Running... 
2019-04-25 17:31:00 (24186): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-04-25 17:31:00 (24186): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-04-25 17:31:06 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-04-25 17:31:06 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-04-25 17:31:06 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-04-25 17:31:06 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:03 --:--:--     0
2019-04-25 17:31:06 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:04 --:--:--     0
2019-04-25 17:31:06 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:05 --:--:--     0
2019-04-25 17:31:06 (24186): Guest Log: 100  762k  100  762k    0     0   119k      0  0:00:06  0:00:06 --:--:--  156k
2019-04-25 17:31:06 (24186): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
2019-04-25 17:31:06 (24186): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed
2019-04-25 17:31:09 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-04-25 17:31:09 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
2019-04-25 17:31:09 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
2019-04-25 17:31:09 (24186): Guest Log:   0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
2019-04-25 17:31:09 (24186): Guest Log: 100  1272  100  1272    0     0    451      0  0:00:02  0:00:02 --:--:--   451
2019-04-25 17:31:10 (24186): Guest Log: Postrun commands...
2019-04-25 17:31:10 (24186): Guest Log: boinc_app exited (0)
2019-04-25 17:31:10 (24186): Guest Log: Saving results...
2019-04-25 17:31:10 (24186): Guest Log: lammps_test.txt
2019-04-25 17:31:10 (24186): VM Completion File Detected.
2019-04-25 17:31:10 (24186): Powering off VM.
2019-04-25 17:31:11 (24186): Successfully stopped VM.
2019-04-25 17:31:11 (24186): Deregistering VM. (boinc_b2e9d40acef781d9, slot#16)
2019-04-25 17:31:11 (24186): Removing network bandwidth throttle group from VM.
2019-04-25 17:31:11 (24186): Removing storage controller(s) from VM.
2019-04-25 17:31:11 (24186): Removing VM from VirtualBox.
2019-04-25 17:31:11 (24186): Removing virtual ISO 9660 disk from VirtualBox.
17:31:16 (24186): called boinc_finish(0)

</stderr_txt>
]]>