Task 124784

Name boinc2docker_30006_1555625147.726600_0
Workunit 53664
Created 18 Apr 2019, 22:05:48 UTC
Sent 18 Apr 2019, 22:12:13 UTC
Report deadline 25 Apr 2019, 22:12:13 UTC
Received 19 Apr 2019, 4:25:06 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 846
Run time 2 min 26 sec
CPU time 2 min 24 sec
Validate state Valid
Credit 13.18
Device peak FLOPS 16.00 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 87.97 MB
Peak swap size 115.03 MB
Peak disk usage 677.05 MB

Stderr output

<core_client_version>7.6.33</core_client_version>
<![CDATA[
<stderr_txt>
2019-04-19 06:22:25 (36524): vboxwrapper (7.9.26200): starting
2019-04-19 06:22:25 (36524): Feature: Checkpoint interval offset (384 seconds)
2019-04-19 06:22:25 (36524): Detected: VirtualBox COM Interface (Version: 5.1.18)
2019-04-19 06:22:25 (36524): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-04-19 06:22:25 (36524): Create VM. (boinc_6d33076f50389926, slot#1)
2019-04-19 06:22:25 (36524): Updating drive controller type and model for desired configuration.
2019-04-19 06:22:25 (36524): Setting Memory Size for VM. (6392MB)
2019-04-19 06:22:25 (36524): Setting CPU Count for VM. (4)
2019-04-19 06:22:25 (36524): Setting Chipset Options for VM.
2019-04-19 06:22:25 (36524): Setting Boot Options for VM.
2019-04-19 06:22:25 (36524): Enabling VM Network Access.
2019-04-19 06:22:25 (36524): Setting Network Configuration for NAT.
2019-04-19 06:22:25 (36524): Disabling USB Support for VM.
2019-04-19 06:22:25 (36524): Disabling COM Port Support for VM.
2019-04-19 06:22:25 (36524): Disabling LPT Port Support for VM.
2019-04-19 06:22:25 (36524): Disabling Audio Support for VM.
2019-04-19 06:22:25 (36524): Disabling Clipboard Support for VM.
2019-04-19 06:22:25 (36524): Disabling Drag and Drop Support for VM.
2019-04-19 06:22:25 (36524): Adding storage controller(s) to VM.
2019-04-19 06:22:25 (36524): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-04-19 06:22:25 (36524): Adding VirtualBox Guest Additions to VM.
2019-04-19 06:22:25 (36524): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-04-19 06:22:25 (36524): Enabling shared directory for VM.
2019-04-19 06:22:25 (36524): Starting VM. (boinc_6d33076f50389926, slot#1)
2019-04-19 06:22:33 (36524): Guest Log: BIOS: VirtualBox 5.1.18

2019-04-19 06:22:33 (36524): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-04-19 06:22:33 (36524): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-04-19 06:22:33 (36524): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-04-19 06:22:33 (36524): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-04-19 06:22:33 (36524): Guest Log: BIOS: Booting from CD-ROM...

2019-04-19 06:22:33 (36524): Successfully started VM. (PID = '35864')
2019-04-19 06:22:33 (36524): Reporting VM Process ID to BOINC.
2019-04-19 06:22:38 (36524): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-04-19 06:22:38 (36524): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-04-19 06:22:38 (36524): VM state change detected. (old = 'poweroff', new = 'running')
2019-04-19 06:22:48 (36524): Preference change detected
2019-04-19 06:22:48 (36524): Setting CPU throttle for VM. (100%)
2019-04-19 06:22:48 (36524): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-04-19 06:22:53 (36524): Guest Log: net.ipv4.ip_forward = 1

2019-04-19 06:22:53 (36524): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-04-19 06:22:53 (36524): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-04-19 06:22:53 (36524): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-04-19 06:22:53 (36524): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-04-19 06:22:53 (36524): Guest Log: Segmentation fault

2019-04-19 06:22:53 (36524): Guest Log: automount ...

2019-04-19 06:22:53 (36524): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-04-19 06:22:53 (36524): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-04-19 06:22:53 (36524): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-04-19 06:22:53 (36524): Guest Log: automount over.

2019-04-19 06:22:53 (36524): Guest Log: Setting hostname to boot2docker Done.

2019-04-19 06:22:53 (36524): Guest Log: Fri Apr 19 06:22:49 UTC 2019 dhcp -------------------------------

2019-04-19 06:22:58 (36524): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-04-19 06:22:58 (36524): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1373)

2019-04-19 06:22:58 (36524): Guest Log: Fri Apr 19 06:22:55 UTC 2019 dhcp -------------------------------

2019-04-19 06:22:58 (36524): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.000066 main     Log opened 2019-04-19T06:22:55.863778000Z

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.000460 main     OS Product: Linux

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.000653 main     OS Release: 4.1.19-boot2docker

2019-04-19 06:22:58 (36524): Guest Log: VB00:00:00.001001 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-04-19 06:22:58 (36524): Guest Log: o00:00:00.001197 main     Executable: /sbin/VBoxService

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.001207 main     Process ID: 1161

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.001207 main     Package type: LINUX_64BITS_GENERIC

2019-04-19 06:22:58 (36524): Guest Log: xSer00:00:00.004423 main     5.0.16 r105871 started. Verbose level = 0

2019-04-19 06:22:58 (36524): Guest Log: vice 5.0.16 r105871 (verbosity: 0) linux.amd64 00:00:00.016297 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-04-19 06:22:58 (36524): Guest Log: (00:00:00.016530 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-04-19 06:22:58 (36524): Guest Log: Mar  4 2016 17:38:55) release log

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.000066 main     Log opened 2019-04-19T06:22:55.863778000Z

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.000460 main     OS Product: Linux

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.000653 main     OS Release: 4.1.19-boot2docker

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.001001 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.001197 main     Executable: /sbin/VBoxService

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.001207 main     Process ID: 1161

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.001207 main     Package type: LINUX_64BITS_GENERIC

2019-04-19 06:22:58 (36524): Guest Log: 00:00:00.004423 main     5.0.16 r105871 started. Verbose level = 0

2019-04-19 06:22:58 (36524): Guest Log: Mounting BOINC shared/...

2019-04-19 06:22:58 (36524): Guest Log: -------------------

2019-04-19 06:22:58 (36524): Guest Log: Fri Apr 19 04:22:57 UTC 2019

2019-04-19 06:23:03 (36524): Guest Log: 00:00:05.021758 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-04-19 06:23:03 (36524): Guest Log: Fri Apr 19 04:23:02 UTC 2019

2019-04-19 06:23:03 (36524): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-04-19 06:23:03 (36524): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-04-19 06:23:03 (36524): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-04-19 06:23:03 (36524): Guest Log:        valid_lft forever preferred_lft forever

2019-04-19 06:23:03 (36524): Guest Log:     inet6 ::1/128 scope host 

2019-04-19 06:23:03 (36524): Guest Log:        valid_lft forever preferred_lft forever

2019-04-19 06:23:03 (36524): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-04-19 06:23:03 (36524): Guest Log:     link/ether ae:ba:3a:29:13:17 brd ff:ff:ff:ff:ff:ff

2019-04-19 06:23:03 (36524): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-04-19 06:23:03 (36524): Guest Log:     link/ether 08:00:27:21:ce:83 brd ff:ff:ff:ff:ff:ff

2019-04-19 06:23:08 (36524): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-04-19 06:23:08 (36524): Guest Log:        valid_lft forever preferred_lft forever

2019-04-19 06:23:08 (36524): Guest Log:     inet6 fe80::a00:27ff:fe21:ce83/64 scope link 

2019-04-19 06:23:08 (36524): Guest Log:        valid_lft forever preferred_lft forever

2019-04-19 06:23:08 (36524): Guest Log: -------------------

2019-04-19 06:23:08 (36524): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-04-19 06:23:08 (36524): Guest Log: Waiting for Docker daemon to start...

2019-04-19 06:23:08 (36524): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-04-19 06:23:08 (36524): Guest Log: Running boinc_app...

2019-04-19 06:23:08 (36524): Guest Log: Importing Docker image from BOINC...

2019-04-19 06:23:08 (36524): Guest Log: 00:00:10.023363 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-04-19 06:24:28 (36524): Guest Log: Prerun diagnostics...

2019-04-19 06:24:28 (36524): Guest Log: REPOSITORY             TAG                 IMAGE ID            CREATED             SIZE

2019-04-19 06:24:28 (36524): Guest Log: carlosred/mpi-lammps   latest              010869c6d9b8        9 months ago        1.473 GB

2019-04-19 06:24:28 (36524): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-04-19 06:24:28 (36524): Guest Log: 1.4G	/var/lib/docker

2019-04-19 06:24:28 (36524): Guest Log:               total        used        free      shared  buff/cache   available

2019-04-19 06:24:28 (36524): Guest Log: Mem:           6204          65        4446        1634        1693        4448

2019-04-19 06:24:28 (36524): Guest Log: Swap:          1493           0        1493

2019-04-19 06:24:28 (36524): Guest Log: Prerun commands...

2019-04-19 06:24:28 (36524): Guest Log: Running... 

2019-04-19 06:24:28 (36524): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-04-19 06:24:28 (36524): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-04-19 06:24:38 (36524): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-04-19 06:24:38 (36524): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-04-19 06:24:38 (36524): Guest Log:   0  762k    0  1311    0     0    844      0  0:15:24  0:00:01  0:15:23   844

2019-04-19 06:24:38 (36524): Guest Log:   1  762k    1 14379    0     0   6877      0  0:01:53  0:00:02  0:01:51  6876

2019-04-19 06:24:38 (36524): Guest Log:  12  762k   12 98595    0     0  29815      0  0:00:26  0:00:03  0:00:23 29814

2019-04-19 06:24:38 (36524): Guest Log:  20  762k   20  153k    0     0  38472      0  0:00:20  0:00:04  0:00:16 38466

2019-04-19 06:24:38 (36524): Guest Log:  35  762k   35  269k    0     0  54550      0  0:00:14  0:00:05  0:00:09 55236

2019-04-19 06:24:38 (36524): Guest Log:  55  762k   55  420k    0     0  71225      0  0:00:10  0:00:06  0:00:04 95488

2019-04-19 06:24:38 (36524): Guest Log:  68  762k   68  518k    0     0  75230      0  0:00:10  0:00:07  0:00:03  101k

2019-04-19 06:24:38 (36524): Guest Log:  88  762k   88  673k    0     0  85604      0  0:00:09  0:00:08  0:00:01  121k

2019-04-19 06:24:38 (36524): Guest Log: 100  762k  100  762k    0     0  92043      0  0:00:08  0:00:08 --:--:--  138k

2019-04-19 06:24:38 (36524): Guest Log:   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current

2019-04-19 06:24:38 (36524): Guest Log:                                  Dload  Upload   Total   Spent    Left  Speed

2019-04-19 06:24:38 (36524): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-04-19 06:24:38 (36524): Guest Log:   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

2019-04-19 06:24:38 (36524): Guest Log: 100  1272  100  1272    0     0   1399      0 --:--:-- --:--:-- --:--:--  1399

2019-04-19 06:24:38 (36524): Guest Log: Postrun commands...

2019-04-19 06:24:38 (36524): Guest Log: boinc_app exited (0)

2019-04-19 06:24:38 (36524): Guest Log: Saving results...

2019-04-19 06:24:38 (36524): Guest Log: lammps_test.txt

2019-04-19 06:24:38 (36524): VM Completion File Detected.
2019-04-19 06:24:38 (36524): Powering off VM.
2019-04-19 06:24:39 (36524): Successfully stopped VM.
2019-04-19 06:24:44 (36524): Deregistering VM. (boinc_6d33076f50389926, slot#1)
2019-04-19 06:24:44 (36524): Removing virtual disk drive(s) from VM.
2019-04-19 06:24:44 (36524): Removing network bandwidth throttle group from VM.
2019-04-19 06:24:44 (36524): Removing storage controller(s) from VM.
2019-04-19 06:24:44 (36524): Removing VM from VirtualBox.
06:24:49 (36524): called boinc_finish(0)

</stderr_txt>
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