Task 120343

Name boinc2docker_11413_1554006767.428211_3
Workunit 46240
Created 11 Apr 2019, 22:58:17 UTC
Sent 11 Apr 2019, 22:59:58 UTC
Report deadline 18 Apr 2019, 22:59:58 UTC
Received 12 Apr 2019, 4:00:24 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 846
Run time 3 min 15 sec
CPU time 3 min 41 sec
Validate state Valid
Credit 26.62
Device peak FLOPS 16.00 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 99.52 MB
Peak swap size 127.21 MB
Peak disk usage 798.13 MB

Stderr output

<core_client_version>7.6.33</core_client_version>
<![CDATA[
<stderr_txt>
2019-04-12 05:56:55 (29992): vboxwrapper (7.9.26200): starting
2019-04-12 05:56:55 (29992): Feature: Checkpoint interval offset (594 seconds)
2019-04-12 05:56:55 (29992): Detected: VirtualBox COM Interface (Version: 5.1.18)
2019-04-12 05:56:55 (29992): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-04-12 05:56:55 (29992): Create VM. (boinc_793cd5721f34ec1b, slot#0)
2019-04-12 05:56:55 (29992): Updating drive controller type and model for desired configuration.
2019-04-12 05:56:55 (29992): Setting Memory Size for VM. (8388MB)
2019-04-12 05:56:55 (29992): Setting CPU Count for VM. (4)
2019-04-12 05:56:55 (29992): Setting Chipset Options for VM.
2019-04-12 05:56:55 (29992): Setting Boot Options for VM.
2019-04-12 05:56:55 (29992): Enabling VM Network Access.
2019-04-12 05:56:55 (29992): Setting Network Configuration for NAT.
2019-04-12 05:56:55 (29992): Disabling USB Support for VM.
2019-04-12 05:56:55 (29992): Disabling COM Port Support for VM.
2019-04-12 05:56:55 (29992): Disabling LPT Port Support for VM.
2019-04-12 05:56:55 (29992): Disabling Audio Support for VM.
2019-04-12 05:56:55 (29992): Disabling Clipboard Support for VM.
2019-04-12 05:56:55 (29992): Disabling Drag and Drop Support for VM.
2019-04-12 05:56:55 (29992): Adding storage controller(s) to VM.
2019-04-12 05:56:55 (29992): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-04-12 05:56:55 (29992): Adding VirtualBox Guest Additions to VM.
2019-04-12 05:56:55 (29992): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-04-12 05:56:55 (29992): Enabling shared directory for VM.
2019-04-12 05:56:55 (29992): Starting VM. (boinc_793cd5721f34ec1b, slot#0)
2019-04-12 05:57:02 (29992): Guest Log: BIOS: VirtualBox 5.1.18

2019-04-12 05:57:02 (29992): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-04-12 05:57:02 (29992): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-04-12 05:57:02 (29992): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-04-12 05:57:02 (29992): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-04-12 05:57:02 (29992): Guest Log: BIOS: Booting from CD-ROM...

2019-04-12 05:57:02 (29992): Successfully started VM. (PID = '29824')
2019-04-12 05:57:02 (29992): Reporting VM Process ID to BOINC.
2019-04-12 05:57:07 (29992): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-04-12 05:57:07 (29992): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-04-12 05:57:07 (29992): VM state change detected. (old = 'poweroff', new = 'running')
2019-04-12 05:57:17 (29992): Preference change detected
2019-04-12 05:57:17 (29992): Setting CPU throttle for VM. (100%)
2019-04-12 05:57:17 (29992): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-04-12 05:57:22 (29992): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-04-12 05:57:22 (29992): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-04-12 05:57:22 (29992): Guest Log: net.ipv4.ip_forward = 1

2019-04-12 05:57:22 (29992): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-04-12 05:57:22 (29992): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-04-12 05:57:22 (29992): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-04-12 05:57:22 (29992): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-04-12 05:57:22 (29992): Guest Log: Segmentation fault

2019-04-12 05:57:22 (29992): Guest Log: automount ...

2019-04-12 05:57:22 (29992): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-04-12 05:57:22 (29992): Guest Log: automount over.

2019-04-12 05:57:22 (29992): Guest Log: Setting hostname to boot2docker Done.

2019-04-12 05:57:22 (29992): Guest Log: Fri Apr 12 05:57:17 UTC 2019 dhcp -------------------------------

2019-04-12 05:57:27 (29992): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-04-12 05:57:27 (29992): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1384)

2019-04-12 05:57:27 (29992): Guest Log: Fri Apr 12 05:57:23 UTC 2019 dhcp -------------------------------

2019-04-12 05:57:27 (29992): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.000062 main     Log opened 2019-04-12T05:57:23.591419000Z

2019-04-12 05:57:27 (29992): Guest Log: VBoxServic00:00:00.002137 main     OS Product: Linux

2019-04-12 05:57:27 (29992): Guest Log: e 00:00:00.002495 main     OS Release: 4.1.19-boot2docker

2019-04-12 05:57:27 (29992): Guest Log: 500:00:00.002690 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-04-12 05:57:27 (29992): Guest Log: .00:00:00.002883 main     Executable: /sbin/VBoxService

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.002884 main     Process ID: 1174

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.002884 main     Package type: LINUX_64BITS_GENERIC

2019-04-12 05:57:27 (29992): Guest Log: 0.16 r105871 (ver00:00:00.005760 main     5.0.16 r105871 started. Verbose level = 0

2019-04-12 05:57:27 (29992): Guest Log: bosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.017804 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.018022 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.000062 main     Log opened 2019-04-12T05:57:23.591419000Z

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.002137 main     OS Product: Linux

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.002495 main     OS Release: 4.1.19-boot2docker

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.002690 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.002883 main     Executable: /sbin/VBoxService

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.002884 main     Process ID: 1174

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.002884 main     Package type: LINUX_64BITS_GENERIC

2019-04-12 05:57:27 (29992): Guest Log: 00:00:00.005760 main     5.0.16 r105871 started. Verbose level = 0

2019-04-12 05:57:27 (29992): Guest Log: Mounting BOINC shared/...

2019-04-12 05:57:27 (29992): Guest Log: -------------------

2019-04-12 05:57:27 (29992): Guest Log: Fri Apr 12 03:57:26 UTC 2019

2019-04-12 05:57:32 (29992): Guest Log: 00:00:05.026962 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-04-12 05:57:33 (29992): Guest Log: Fri Apr 12 03:57:31 UTC 2019

2019-04-12 05:57:33 (29992): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-04-12 05:57:33 (29992): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-04-12 05:57:33 (29992): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-04-12 05:57:33 (29992): Guest Log:        valid_lft forever preferred_lft forever

2019-04-12 05:57:33 (29992): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-04-12 05:57:33 (29992): Guest Log:     link/ether ca:14:aa:39:73:c7 brd ff:ff:ff:ff:ff:ff

2019-04-12 05:57:33 (29992): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-04-12 05:57:33 (29992): Guest Log:     link/ether 08:00:27:8a:4a:0a brd ff:ff:ff:ff:ff:ff

2019-04-12 05:57:33 (29992): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-04-12 05:57:33 (29992): Guest Log:        valid_lft forever preferred_lft forever

2019-04-12 05:57:33 (29992): Guest Log: -------------------

2019-04-12 05:57:33 (29992): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-04-12 05:57:33 (29992): Guest Log: Waiting for Docker daemon to start...

2019-04-12 05:57:38 (29992): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-04-12 05:57:38 (29992): Guest Log: Running boinc_app...

2019-04-12 05:57:38 (29992): Guest Log: Importing Docker image from BOINC...

2019-04-12 05:57:38 (29992): Guest Log: 00:00:10.028613 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-04-12 05:59:23 (29992): Guest Log: Prerun diagnostics...

2019-04-12 05:59:23 (29992): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-04-12 05:59:23 (29992): Guest Log: carlosred/blast     latest              e77b3f740615        10 months ago       1.972 GB

2019-04-12 05:59:23 (29992): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-04-12 05:59:23 (29992): Guest Log: 1.9G	/var/lib/docker

2019-04-12 05:59:23 (29992): Guest Log:               total        used        free      shared  buff/cache   available

2019-04-12 05:59:23 (29992): Guest Log: Mem:           8156          74        5850        2147        2231        5860

2019-04-12 05:59:23 (29992): Guest Log: Swap:          1984           0        1984

2019-04-12 05:59:23 (29992): Guest Log: Prerun commands...

2019-04-12 05:59:23 (29992): Guest Log: Running... 

2019-04-12 05:59:23 (29992): Guest Log: --2019-04-12 03:59:21--  http://boinc.tacc.utexas.edu:5060/boincserver/v2/reef/carlos.red@utexas.edu/P04156.fasta

2019-04-12 05:59:23 (29992): Guest Log: Resolving boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)... 129.114.60.78

2019-04-12 05:59:23 (29992): Guest Log: Connecting to boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)|129.114.60.78|:5060... connected.

2019-04-12 05:59:23 (29992): Guest Log: HTTP request sent, awaiting response... 200 OK

2019-04-12 05:59:23 (29992): Guest Log: Length: 342 [text/html]

2019-04-12 05:59:23 (29992): Guest Log: Saving to: 'P04156.fasta'

2019-04-12 05:59:23 (29992): Guest Log:      0K                                                       100% 39.8M=0s

2019-04-12 05:59:23 (29992): Guest Log: 2019-04-12 03:59:22 (39.8 MB/s) - 'P04156.fasta' saved [342/342]

2019-04-12 05:59:23 (29992): Guest Log: --2019-04-12 03:59:22--  http://boinc.tacc.utexas.edu:5060/boincserver/v2/reef/carlos.red@utexas.edu/zebrafish.1.protein.faa.gz

2019-04-12 05:59:23 (29992): Guest Log: Resolving boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)... 129.114.60.78

2019-04-12 05:59:23 (29992): Guest Log: Connecting to boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)|129.114.60.78|:5060... connected.

2019-04-12 05:59:28 (29992): Guest Log: HTTP request sent, awaiting response... 200 OK

2019-04-12 05:59:28 (29992): Guest Log: Length: 14026575 (13M) [text/html]

2019-04-12 05:59:28 (29992): Guest Log: Saving to: 'zebrafish.1.protein.faa.gz'

2019-04-12 05:59:28 (29992): Guest Log:      0K .......... .......... .......... .......... ..........  0%  153K 89s

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2019-04-12 05:59:48 (29992): Guest Log:  12950K .......... .......... .......... .......... .......... 94%  559K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13000K .......... .......... .......... .......... .......... 95%  566K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13050K .......... .......... .......... .......... .......... 95%  571K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13100K .......... .......... .......... .......... .......... 96%  591K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13150K .......... .......... .......... .......... .......... 96%  556K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13200K .......... .......... .......... .......... .......... 96%  573K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13250K .......... .......... .......... .......... .......... 97%  560K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13300K .......... .......... .......... .......... .......... 97%  560K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13350K .......... .......... .......... .......... .......... 97%  553K 1s

2019-04-12 05:59:48 (29992): Guest Log:  13400K .......... .......... .......... .......... .......... 98%  550K 0s

2019-04-12 05:59:48 (29992): Guest Log:  13450K .......... .......... .......... .......... .......... 98%  566K 0s

2019-04-12 05:59:48 (29992): Guest Log:  13500K .......... .......... .......... .......... .......... 98%  539K 0s

2019-04-12 05:59:48 (29992): Guest Log:  13550K .......... .......... .......... .......... .......... 99%  616K 0s

2019-04-12 05:59:48 (29992): Guest Log:  13600K .......... .......... .......... .......... .......... 99%  559K 0s

2019-04-12 05:59:53 (29992): Guest Log:  13650K .......... .......... .......... .......... .......   100% 61.4K=25s

2019-04-12 05:59:53 (29992): Guest Log: 2019-04-12 03:59:48 (542 KB/s) - 'zebrafish.1.protein.faa.gz' saved [14026575/14026575]

2019-04-12 05:59:53 (29992): Guest Log: Building a new DB, current time: 04/12/2019 03:59:49

2019-04-12 05:59:53 (29992): Guest Log: New DB name:   /data/zebrafish.1.protein.faa

2019-04-12 05:59:53 (29992): Guest Log: New DB title:  zebrafish.1.protein.faa

2019-04-12 05:59:53 (29992): Guest Log: Sequence type: Protein

2019-04-12 05:59:53 (29992): Guest Log: Keep Linkouts: T

2019-04-12 05:59:53 (29992): Guest Log: Keep MBits: T

2019-04-12 05:59:53 (29992): Guest Log: Maximum file size: 1000000000B

2019-04-12 05:59:53 (29992): Guest Log: Adding sequences from FASTA; added 52967 sequences in 2.86831 seconds.

2019-04-12 05:59:58 (29992): Guest Log: Postrun commands...

2019-04-12 05:59:58 (29992): Guest Log: boinc_app exited (0)

2019-04-12 05:59:58 (29992): Guest Log: Saving results...

2019-04-12 05:59:58 (29992): Guest Log: results.txt

2019-04-12 05:59:58 (29992): VM Completion File Detected.
2019-04-12 05:59:58 (29992): Powering off VM.
2019-04-12 05:59:59 (29992): Successfully stopped VM.
2019-04-12 06:00:04 (29992): Deregistering VM. (boinc_793cd5721f34ec1b, slot#0)
2019-04-12 06:00:04 (29992): Removing virtual disk drive(s) from VM.
2019-04-12 06:00:04 (29992): Removing network bandwidth throttle group from VM.
2019-04-12 06:00:04 (29992): Removing storage controller(s) from VM.
2019-04-12 06:00:04 (29992): Removing VM from VirtualBox.
06:00:09 (29992): called boinc_finish(0)

</stderr_txt>
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